Clone LD35843 Report

Search the DGRC for LD35843

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:358
Well:43
Vector:pOT2
Associated Gene/TranscriptCG8187-RA
Protein status:LD35843.pep: gold
Preliminary Size:1753
Sequenced Size:1681

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8187 2001-01-01 Release 2 assignment
CG8187 2001-10-10 Blastp of sequenced clone
CG8187 2003-01-01 Sim4 clustering to Release 3
CG8187 2008-04-29 Release 5.5 accounting
CG8187 2008-08-15 Release 5.9 accounting
CG8187 2008-12-18 5.12 accounting

Clone Sequence Records

LD35843.complete Sequence

1681 bp (1681 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061426

> LD35843.complete
TTTGCATTTAAAAGTAAACAAATCTAATAAATTCCATTTCTTTATTGGAT
TTATAATGCTTCTGCAACGCGTGTGGTTGACACATTTAAACAACCATCTA
CGCCAATACGCGAACAAGTCGCGAGCCCACATCAAACCAGCCATGGCCGT
GAGCATGCGGATGGTCCATCAGGAGATCCTGCATTATGTAAACCCCTTTG
CCAGGATCAACGTGAAGTCCGATGTTTTCCTGCGCATCCAGCCCGCGGAT
GTGCATCAGTATACCAGCGGGGATGTGTTTATCGCCCAACTGGTTGGCGG
CCATGTCAAGAACTCGAATGTCTCTCTCGATGTGAAGGTAACCGATGAGG
ACAAGGTGGTCAATGTGGTGGTTAAACAACTGGCGGAGCAGCCCTCAAAG
CTTGAATGCCATCTGCAAATACCTGTGCGTTCCGATGTCTCTGTGGACGC
AAAAGGTAGTGTGCGAGTGGAAGGCATACAGAGTGAACTGCTGCAAGTCA
AAGCAAAGGAAGGCATCCTTACCAAAAATATCAAGGCCACCCATATAAAC
TTGTACAGTGAAAATGGCAACATCAATTGCCAGGGCACATTGCTGGGCAA
GATTACCCAAATAGAGTCACAAAATGGGAACATTGCGATGGATAAGTTGC
AAGGAGACAGCTTGAATTGTTCCACCAAAGCTGGCAGTATTGTAACCGAT
TGTTGTTATGTGGAAAAGTCAAAGTTTCAGACACAAACTGGGCGTCTGGA
GCTCAAGAATGTCCACAAAAGCAGCGAAGTGCACGTCCATCAGTCGTCGG
ATCTCAATATGACTGGAGTACATGGCAATATTCAAATAACTACCAAAGGA
GGAAATTTAAATGTCCAACTCTCTGAGCTAGTGGGGAGCAACAAAATCGA
CGCCGAGAACTTATTAGAAGAGGCTATCATACACATTTCCCAAGCCATAG
AGCAGAATCTTCACATCGAGGTAACAGCCCCCGAAGTGAAATTGGAAAAC
GAACTGGAGCATGTAGCCCATGCTCTCAACGAGAGCAAGAACAAATTCGT
GCTAAGCAATCCAAATACAAATCGACTGGAAGTAAGCAGCACAGGCGACA
AGGGCGTGCGCCTGGGAAAACAGTCATGGAGCGATATGATGCGTAATAAG
TTGAAGGCTACCGGCACCTTGGACGATTTACCTTAGGTAAAGACAGAGAC
TAACTAAGTTAAGAATATATTGTGCTGCAAGCTACAATCTCAGTCATTTT
TGCTTTATCCATCATGGAGGCATGTTGTTTAGGCTTGGCCCGACTCCTTA
GCCACTTTATCCTTTAAGCATTCAAGTGCCCTTGAGAAAATGGCTTCTTC
CTTTCCGGCTTTGAGTGCAGACACAAACAGTTGCACCTTTTCATCGCCAA
TCTCTTGGAGATCCGAGTTTTCCGCTTTTATCACCATACATGCCAACAGG
CGCAGCAACTTCAAGGCGTTCTCCACATACTGCTCCTTTGGAGCGTCATC
CTCCTCCTCTTCGTCCTCTTCGAACTCATTGGCGTCGGGATCACTTCCCC
CCGTGTAGTTGTCAATGTGCTGTTTAAGTCTATACCACAATTCCAAAAGA
TTTAAGAAGGCCTCCTTGTGATAGAAGTACTTCAGGCGCTGCAAAAATAA
ATATTTAAATAGAAAAAAAAAAAAAAAAAAA

LD35843.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-RA 1713 CG8187-RA 50..1713 1..1664 8320 100 Plus
CG30467-RA 1789 CG30467-RA 1351..1789 1638..1200 2195 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11426704..11427553 1662..813 4250 100 Minus
chr2R 21145070 chr2R 11427850..11428477 628..1 3125 99.8 Minus
chr2R 21145070 chr2R 11427607..11427791 812..628 910 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15539552..15540403 1664..813 4260 100 Minus
2R 25286936 2R 15540700..15541327 628..1 3140 100 Minus
2R 25286936 2R 15540457..15540641 812..628 925 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15540751..15541602 1664..813 4260 100 Minus
2R 25260384 2R 15541899..15542526 628..1 3140 100 Minus
2R 25260384 2R 15541656..15541840 812..628 925 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:29:11 has no hits.

LD35843.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:29:54 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11426704..11427553 813..1662 100 <- Minus
chr2R 11427607..11427790 629..812 99 <- Minus
chr2R 11427850..11428477 1..628 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:03 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 1..1131 56..1186 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:02 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 1..1131 56..1186 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:06:23 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 1..1131 56..1186 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:05 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 1..1131 56..1186 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:24 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 1..1131 56..1186 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:24 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 9..1670 1..1662 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:02 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 9..1670 1..1662 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:06:23 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 37..1698 1..1662 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:05 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 9..1670 1..1662 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:24 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
CG8187-RA 37..1698 1..1662 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:54 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15539554..15540403 813..1662 100 <- Minus
2R 15540457..15540640 629..812 100 <- Minus
2R 15540700..15541327 1..628 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:54 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15539554..15540403 813..1662 100 <- Minus
2R 15540457..15540640 629..812 100 <- Minus
2R 15540700..15541327 1..628 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:29:54 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15539554..15540403 813..1662 100 <- Minus
2R 15540457..15540640 629..812 100 <- Minus
2R 15540700..15541327 1..628 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:06:23 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11427059..11427908 813..1662 100 <- Minus
arm_2R 11427962..11428145 629..812 100 <- Minus
arm_2R 11428205..11428832 1..628 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:11 Download gff for LD35843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15540753..15541602 813..1662 100 <- Minus
2R 15541656..15541839 629..812 100 <- Minus
2R 15541899..15542526 1..628 100   Minus

LD35843.hyp Sequence

Translation from 0 to 1185

> LD35843.hyp
LHLKVNKSNKFHFFIGFIMLLQRVWLTHLNNHLRQYANKSRAHIKPAMAV
SMRMVHQEILHYVNPFARINVKSDVFLRIQPADVHQYTSGDVFIAQLVGG
HVKNSNVSLDVKVTDEDKVVNVVVKQLAEQPSKLECHLQIPVRSDVSVDA
KGSVRVEGIQSELLQVKAKEGILTKNIKATHINLYSENGNINCQGTLLGK
ITQIESQNGNIAMDKLQGDSLNCSTKAGSIVTDCCYVEKSKFQTQTGRLE
LKNVHKSSEVHVHQSSDLNMTGVHGNIQITTKGGNLNVQLSELVGSNKID
AENLLEEAIIHISQAIEQNLHIEVTAPEVKLENELEHVAHALNESKNKFV
LSNPNTNRLEVSSTGDKGVRLGKQSWSDMMRNKLKATGTLDDLP*

LD35843.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-PA 376 CG8187-PA 1..376 19..394 1915 100 Plus

LD35843.pep Sequence

Translation from 55 to 1185

> LD35843.pep
MLLQRVWLTHLNNHLRQYANKSRAHIKPAMAVSMRMVHQEILHYVNPFAR
INVKSDVFLRIQPADVHQYTSGDVFIAQLVGGHVKNSNVSLDVKVTDEDK
VVNVVVKQLAEQPSKLECHLQIPVRSDVSVDAKGSVRVEGIQSELLQVKA
KEGILTKNIKATHINLYSENGNINCQGTLLGKITQIESQNGNIAMDKLQG
DSLNCSTKAGSIVTDCCYVEKSKFQTQTGRLELKNVHKSSEVHVHQSSDL
NMTGVHGNIQITTKGGNLNVQLSELVGSNKIDAENLLEEAIIHISQAIEQ
NLHIEVTAPEVKLENELEHVAHALNESKNKFVLSNPNTNRLEVSSTGDKG
VRLGKQSWSDMMRNKLKATGTLDDLP*

LD35843.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13727-PA 374 GF13727-PA 1..371 1..371 1486 73.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22348-PA 375 GG22348-PA 1..374 1..376 1786 90.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21917-PA 342 GH21917-PA 1..336 30..366 1013 61.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8187-PA 376 CG8187-PA 1..376 1..376 1915 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19267-PA 340 GI19267-PA 1..338 30..368 1135 62.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20036-PA 378 GL20036-PA 2..374 1..371 1306 65.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20879-PA 378 GA20879-PA 2..374 1..371 1310 64.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20136-PA 372 GM20136-PA 1..372 1..376 1869 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25613-PA 182 GD25613-PA 1..182 195..376 937 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22143-PA 312 GJ22143-PA 1..307 30..367 941 55.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23203-PA 347 GK23203-PA 7..339 36..368 1159 66.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14149-PA 374 GE14149-PA 1..374 1..376 1746 90.4 Plus