Clone LD35885 Report

Search the DGRC for LD35885

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:358
Well:85
Vector:pOT2
Associated Gene/TranscriptJheh3-RA
Protein status:LD35885.pep: gold
Preliminary Size:1737
Sequenced Size:1574

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15106 2001-01-01 Release 2 assignment
CG15106 2001-10-10 Blastp of sequenced clone
CG15106 2003-01-01 Sim4 clustering to Release 3
Jheh3 2008-04-29 Release 5.5 accounting
Jheh3 2008-08-15 Release 5.9 accounting
Jheh3 2008-12-18 5.12 accounting

Clone Sequence Records

LD35885.complete Sequence

1574 bp (1574 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061427

> LD35885.complete
TTGCACGGTCGTGTTTATTCCGAATTCGGGTTAGGAATCACAAACCATTA
TCTCTTCTGGGAGGTGTACGAGGTGGCTAATTTAAATTCATAACGAGGGG
GAGCTAATTGCGCCTGTGGCCAGAATGAAGTGCCTGATAGTGTTTGGTCT
GATTGTGGCCCTGTTTGGTGCCTTCGTGGGCTATGGCTACGTGGTATTCA
CGGAACTGACCAAGCCCCTGCCCAAGCCGGAGTTCAAGGATGATACGTAC
TGGGGTCCCGGCGATGCCAAGGACTTTGTGCCCGACGAAAAGATCTACGA
GTTTAAGCTGCAGGTGCCGCAATCGGAGATCGATGATCTGCGAAAGGAAC
TCAACCGCACGCTGAGACTAACCGAACCGCTGGACGGAATCGCCTTTGAA
TACGGATTCAACACCTATGCACTGGAGCAGTTTGTGGACTACTGGCGGGA
CAATTACCTGACCAAGTGGGATGAGCGCCAGGAGCTGTTCAACTCGTTCA
AGCAGTACAAGACCGAAATTCAGGGCTTGAATATTCACTATATCCACGAA
AAGGTATCCGAGGAGGCTAAGGAAAAGAAACACGTATATCCTCTGCTCCT
GCTCCACGGCTGGCCAGGATCGGTGCGCGAGTTCTTCGACTTTATACCCA
TGCTAACCAAGCACTCAAACATCACGGATTACGCTTTTGAGGTCGTGGCA
CCATCCCTGGTGGGCTACGGATGGTCCGATGCTGCCACGCGTCCCGGATT
TAATGCCGCTGAAATGGCCACTGTGATGCGTAACCTGATGCTGCGTCTGG
GCCACAAGAAGTTCTTCATCCAAGGCGGAGATTGGGGCAGCATCATTGGC
AGCAACTTGGCCACCTTGTATCCAGAGAACGTAATCGGTTACCACTCGAA
CATGTGCGTTCTGCACACGCCACTGGCCATTCTGAAGGGAATCTACGGCA
GCTTCTTCCCGGAGAAGTACTTGCCGTCCAGATTCTTTGTGGATCATCAC
TTCCCCGTGTGGGAAAAATGGCTGGAGCTGCTGGAGGAAAGCGGTTACTT
TCACATCCAGGCCACCAAGCCGGATACGATTGGAGCGGCTCTGACCTCCA
GTCCCGTCGGCTTGGCCTCCTATATCCTCGAGAAATTCCAGACCTGCACA
AATCCCGGCCTGAAGCAGGACTTTGGCGCCATAGTCACTGTCTTCGGCCT
GGAGGCTGTGCTGGACAACCTGATGGTCTACTATCTGACGAACTCGGCCA
CGACAGCGGCTCGTTTCTACCTGGAGAACGTGTCCAAGACGTACAGGGAT
CTCCAGCTGGATCGTGTGCAGTCCCCGGTTCCCATGGGCTGTGCCCGCTT
CCGGTTCGATCTGGCCTCGGTGACTGACTGGCAGCTGAGGGACAAGTTCC
CCAACCTGACCCACTCGATGTACTTCCAGCAGGGCAGCCACTTTGCCGCC
CTGGAGATGCCGGCCATGTTGTTCAATGATTTTACCGCCTTTGTGGGAAA
AATTGGCCTACACGGCGAGAAGAGAAAATAAATTGTTTTAAGTATAATAA
AAAAAAAAAAAAAAAAAAAAAAAA

LD35885.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh3-RA 1732 Jheh3-RA 151..1698 1..1548 7740 100 Plus
Jheh1-RA 1646 Jheh1-RA 805..938 774..907 340 83.5 Plus
Jheh1-RA 1646 Jheh1-RA 1060..1124 1032..1096 160 83 Plus
Jheh1-RA 1646 Jheh1-RA 624..672 599..647 140 85.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14747509..14748326 1548..731 4045 99.6 Minus
chr2R 21145070 chr2R 14748661..14749187 525..1 2495 98.7 Minus
chr2R 21145070 chr2R 14748394..14748600 731..525 1005 99 Minus
chr2R 21145070 chr2R 14741216..14741349 907..774 340 83.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18860375..18861192 1548..731 4090 100 Minus
2R 25286936 2R 18861526..18862050 525..1 2625 100 Minus
2R 25286936 2R 18861260..18861466 731..525 1035 100 Minus
2R 25286936 2R 18854088..18854221 907..774 340 83.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18861574..18862391 1548..731 4090 100 Minus
2R 25260384 2R 18862725..18863249 525..1 2625 100 Minus
2R 25260384 2R 18862459..18862665 731..525 1035 100 Minus
2R 25260384 2R 18855287..18855420 907..774 340 83.5 Minus
2R 25260384 2R 18855101..18855165 1096..1032 160 83 Minus
2R 25260384 2R 18855611..18855659 647..599 140 85.7 Minus
Blast to na_te.dros performed on 2019-03-15 13:44:09 has no hits.

LD35885.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:45:19 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14747509..14748326 731..1548 99 <- Minus
chr2R 14748395..14748599 526..730 99 <- Minus
chr2R 14748661..14749187 1..525 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:05 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 1..1407 125..1531 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:54:04 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 1..1407 125..1531 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:11:02 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 1..1407 125..1531 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:23:06 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 1..1407 125..1531 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:39:40 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 1..1407 125..1531 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:26 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 22..1569 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:54:04 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 22..1569 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:11:02 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 29..1576 1..1548 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:23:06 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 22..1569 1..1548 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:39:40 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 29..1576 1..1548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:19 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18860375..18861192 731..1548 100 <- Minus
2R 18861261..18861465 526..730 100 <- Minus
2R 18861526..18862050 1..525 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:19 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18860375..18861192 731..1548 100 <- Minus
2R 18861261..18861465 526..730 100 <- Minus
2R 18861526..18862050 1..525 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:19 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18860375..18861192 731..1548 100 <- Minus
2R 18861261..18861465 526..730 100 <- Minus
2R 18861526..18862050 1..525 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:11:02 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14747880..14748697 731..1548 100 <- Minus
arm_2R 14748766..14748970 526..730 100 <- Minus
arm_2R 14749031..14749555 1..525 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:13 Download gff for LD35885.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18861574..18862391 731..1548 100 <- Minus
2R 18862460..18862664 526..730 100 <- Minus
2R 18862725..18863249 1..525 100   Minus

LD35885.hyp Sequence

Translation from 124 to 1530

> LD35885.hyp
MKCLIVFGLIVALFGAFVGYGYVVFTELTKPLPKPEFKDDTYWGPGDAKD
FVPDEKIYEFKLQVPQSEIDDLRKELNRTLRLTEPLDGIAFEYGFNTYAL
EQFVDYWRDNYLTKWDERQELFNSFKQYKTEIQGLNIHYIHEKVSEEAKE
KKHVYPLLLLHGWPGSVREFFDFIPMLTKHSNITDYAFEVVAPSLVGYGW
SDAATRPGFNAAEMATVMRNLMLRLGHKKFFIQGGDWGSIIGSNLATLYP
ENVIGYHSNMCVLHTPLAILKGIYGSFFPEKYLPSRFFVDHHFPVWEKWL
ELLEESGYFHIQATKPDTIGAALTSSPVGLASYILEKFQTCTNPGLKQDF
GAIVTVFGLEAVLDNLMVYYLTNSATTAARFYLENVSKTYRDLQLDRVQS
PVPMGCARFRFDLASVTDWQLRDKFPNLTHSMYFQQGSHFAALEMPAMLF
NDFTAFVGKIGLHGEKRK*

LD35885.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh3-PA 468 CG15106-PA 1..468 1..468 2508 100 Plus
Jheh1-PA 474 CG15101-PA 10..462 9..457 1221 53 Plus
Jheh2-PD 463 CG15102-PD 8..459 9..459 1121 47.2 Plus
Jheh2-PA 463 CG15102-PA 8..459 9..459 1121 47.2 Plus

LD35885.pep Sequence

Translation from 124 to 1530

> LD35885.pep
MKCLIVFGLIVALFGAFVGYGYVVFTELTKPLPKPEFKDDTYWGPGDAKD
FVPDEKIYEFKLQVPQSEIDDLRKELNRTLRLTEPLDGIAFEYGFNTYAL
EQFVDYWRDNYLTKWDERQELFNSFKQYKTEIQGLNIHYIHEKVSEEAKE
KKHVYPLLLLHGWPGSVREFFDFIPMLTKHSNITDYAFEVVAPSLVGYGW
SDAATRPGFNAAEMATVMRNLMLRLGHKKFFIQGGDWGSIIGSNLATLYP
ENVIGYHSNMCVLHTPLAILKGIYGSFFPEKYLPSRFFVDHHFPVWEKWL
ELLEESGYFHIQATKPDTIGAALTSSPVGLASYILEKFQTCTNPGLKQDF
GAIVTVFGLEAVLDNLMVYYLTNSATTAARFYLENVSKTYRDLQLDRVQS
PVPMGCARFRFDLASVTDWQLRDKFPNLTHSMYFQQGSHFAALEMPAMLF
NDFTAFVGKIGLHGEKRK*

LD35885.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13741-PA 468 GF13741-PA 1..466 1..466 2272 88.6 Plus
Dana\GF13744-PA 474 GF13744-PA 3..465 5..460 1203 50 Plus
Dana\GF13743-PA 462 GF13743-PA 9..462 10..462 1119 46.6 Plus
Dana\GF13742-PA 462 GF13742-PA 8..459 4..459 1099 48.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20933-PA 468 GG20933-PA 1..468 1..468 2445 96.2 Plus
Dere\GG20936-PA 474 GG20936-PA 7..465 6..460 1204 51.3 Plus
Dere\GG20934-PA 463 GG20934-PA 8..459 9..459 1145 48.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19728-PA 463 GH19728-PA 1..460 1..460 2009 76.7 Plus
Dgri\GH19730-PA 474 GH19730-PA 7..465 9..460 1171 51.1 Plus
Dgri\GH19729-PA 462 GH19729-PA 11..459 9..459 1165 48.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh3-PA 468 CG15106-PA 1..468 1..468 2508 100 Plus
Jheh1-PA 474 CG15101-PA 10..462 9..457 1221 53 Plus
Jheh2-PD 463 CG15102-PD 8..459 9..459 1121 47.2 Plus
Jheh2-PA 463 CG15102-PA 8..459 9..459 1121 47.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20152-PA 465 GI20152-PA 1..465 1..465 2068 79.1 Plus
Dmoj\GI20154-PA 474 GI20154-PA 7..465 9..460 1181 50.4 Plus
Dmoj\GI20153-PA 464 GI20153-PA 11..459 9..459 1176 49.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10579-PA 468 GL10579-PA 1..468 1..468 2157 84.6 Plus
Dper\GL10582-PA 474 GL10582-PA 4..465 3..460 1189 50.5 Plus
Dper\GL10580-PA 325 GL10580-PA 9..320 10..320 789 47.5 Plus
Dper\GL10581-PA 117 GL10581-PA 6..117 351..462 260 44.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13496-PA 468 GA13496-PA 1..468 1..468 2158 84.6 Plus
Dpse\GA13492-PA 474 GA13492-PA 4..465 3..460 1191 50.5 Plus
Dpse\GA13493-PA 463 GA13493-PA 9..463 10..462 1166 49 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Jheh3-PA 468 GM19861-PA 1..468 1..468 2470 97.2 Plus
Dsec\Jheh1-PA 474 GM19863-PA 7..465 6..460 1220 52.1 Plus
Dsec\GM19862-PA 463 GM19862-PA 8..459 9..459 1124 46.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Jheh3-PA 468 GD25348-PA 1..468 1..468 2471 97.6 Plus
Dsim\Jheh1-PA 474 GD25350-PA 7..465 6..460 1219 52.1 Plus
Dsim\GD25349-PA 463 GD25349-PA 8..459 9..459 1133 46.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22429-PA 466 GJ22429-PA 1..466 1..466 2070 78.8 Plus
Dvir\GJ22430-PA 462 GJ22430-PA 11..459 9..459 1186 48.2 Plus
Dvir\GJ22431-PA 474 GJ22431-PA 7..465 9..460 1177 50.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20691-PA 467 GK20691-PA 1..465 1..465 2111 81.3 Plus
Dwil\GK20693-PA 474 GK20693-PA 7..465 6..460 1224 51.9 Plus
Dwil\GK20692-PA 463 GK20692-PA 23..462 21..462 1167 48.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13871-PA 468 GE13871-PA 1..468 1..468 2438 95.9 Plus
Dyak\GE13873-PA 474 GE13873-PA 7..465 6..460 1216 51.9 Plus
Dyak\GE13872-PA 463 GE13872-PA 8..459 9..459 1125 47 Plus