Clone LD35981 Report

Search the DGRC for LD35981

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:359
Well:81
Vector:pOT2
Associated Gene/TranscriptCG6961-RA
Protein status:LD35981.pep: gold
Preliminary Size:2048
Sequenced Size:1852

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6961 2001-01-01 Release 2 assignment
CG6961 2001-10-10 Blastp of sequenced clone
CG6961 2003-01-01 Sim4 clustering to Release 3
CG6961 2008-04-29 Release 5.5 accounting
CG6961 2008-08-15 Release 5.9 accounting
CG6961 2008-12-18 5.12 accounting

Clone Sequence Records

LD35981.complete Sequence

1852 bp (1852 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061430

> LD35981.complete
AGCTCGAATAGTCAGGATAATTTGAATCTGGTTGTTTTTACTTCAAACAT
AGCTTAGGAAAGGGTGTGAAAAGCGTATACTGCGAGCCATGGACATCGAT
TTGAGTCTGGACGAGATTATAGAGCGGAAGCGCGGGCAACGCGGCTATCG
TCCCCTCGACAGAAAGTTCAATGCGAACTTCTCCAAGCCGCGCCAGCTGC
TGAACAAGCCTTTTTTCAAGCCATCGGGTGCACGAGGATCTCACTCTGAT
ATGCCGGCAAAGCGCACCTTCGATGCCAGAAACACGATTGCCGCGAAGAC
ACGGGCCAAGATAGCCGATGCTCGGGATCTGATCAACAAGAGCGTGCGCG
ACTCGGGCATCGATGCCCGCCAACTGTTGCTGGAGCGAAAGAAGGCCCGT
TCGGCGGGCCCAATACTTATTGATGACGAAGAAGAGTCGTTTGAGCCATC
ACATCGCGCACGCGGAAAGGGAGTGCACATCGGTCAGTTTGGTCACCGCC
TTAGCATGTCAAACCATGCGGACGGCACCATTCAGGCGAAATGGGACTCG
GACGACGGGGTCGTTGAACTGGGTAACCACATGTTGTCCGGCTTGCGTCG
AACCTTTGACCCCAGATCCCATAAGCCGGGCAAACCCTTTGCTCCACGAC
GCTATATTGATCTTGATAATATGCAGGACCTCGAGGATGAGGAAATATCT
CGCACACTGCACTTAGGGCAAATGAAGCAAGCGTCGCCACGCTACTCAAT
TGGTGGGCTCGACCTGAACCGCGGCGACGACGTGGAGATGTCCATGGCCC
CACTAAATAACAAAATAGATAACAATGCATTCTCCATTTACGAGGCGGCC
CGCAATCGCATTGAGCGTCCTTCGCTGACCAACCGACTCGTAGTTGGACG
CTCAAATAGCACCAAGGAGCCTCTCGAGCGCCGCCACCGCGACACAGTAA
GCACAAGTAAACTCCCAGAATCGCTGCGGTCTCGTCTGTTTGTCGGTAAG
AGAGATCCTCACATTTCTCATGGCATCTACGCCAACGAGAACCGGAGAAA
GGCTGTTGGTGGCGGTGGTGGTAGTGATAGCGATAGCGGTACTGATAGTG
ATGGTGATGCAGCTGCTCCATCGAAGAACAAGCGCCGTTCGCCATCCCCA
TTGTCGCTGCGTACGTCGAACACAAAGGATGGATACCGCCTGCTGGTGAG
CAATCTGCATACTAACGTGACTACTGCGGATATTCGCGAGCTTTTTAGCG
ACATCGGCCCAGTGTACGACGCTCGTGTGGTGCGTCCCGGCACCGCCGAA
GTTATTTACAAGTCACTGGAACATGCCGAGAAGGCCGTAGATACCTATCA
CCATCGTCAGTTCGATGACCAGCCCATGCACTGTGTGCTGGTCAATCCGC
ACTCCTCCCGTCGCTCGGTGCACAAGGCCAGCTCTCGCACCGTGACCACA
AACTCGTCTGGCGTGGAGGTGGACATCGATGCACTTCACTCGGTACTCTT
CAGGGCCCGCTAGGAAGTGCGAGGCAGAGCCCGGGAACTACAGCAACTAG
ATAATTTTTTCTATTTAGTTCAACAACGTAATCCATTTTCATTTCGCGCT
TATAAAATTCGAGTCGATCCATCCAGCGTATGTTTAGCAAACTAGACTAG
TTTAAGTGAATTCTGCCATGTCTGTCCACTTTAGAATTTTGTGTTTAGTG
AGTAAAATTTTTGTCTTATTATCATAGAAATTCAGCAGTCCCACTATAGA
CACAACAAAATGTATGGTATAGAAACTGATTTTACAATTGCTTGTATAAT
ATTTCATAAAATGTACAGTTTTTAAATTTCATAAAAAAAAAAAAAAAAAA
AA

LD35981.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 2052 CG6961-RA 221..2052 1..1832 9160 100 Plus
CG18259-RA 2122 CG18259-RA 56..1611 4..1559 7495 98.7 Plus
nc_24642.a 680 nc_24642.a 1..332 1228..1559 1600 98.7 Plus
CG18259-RA 2122 CG18259-RA 1637..1730 1562..1655 380 93.6 Plus
nc_24642.a 680 nc_24642.a 358..451 1562..1655 380 93.6 Plus
CG18259-RA 2122 CG18259-RA 1775..1899 1659..1783 295 82.4 Plus
nc_24642.a 680 nc_24642.a 496..620 1659..1783 295 82.4 Plus
CG18259-RA 2122 CG18259-RA 2000..2054 1782..1836 275 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18675698..18676440 1431..689 3715 100 Minus
chrX 22417052 chrX 18671010..18671752 1431..689 3640 99.3 Minus
chrX 22417052 chrX 18676497..18677017 689..169 2605 100 Minus
chrX 22417052 chrX 18671809..18672329 689..169 2545 99.2 Minus
chrX 22417052 chrX 18675241..18675643 1832..1430 2015 100 Minus
chrX 22417052 chrX 18677080..18677247 168..1 840 100 Minus
chrX 22417052 chrX 18672392..18672556 168..4 780 98.2 Minus
chrX 22417052 chrX 18670826..18670955 1559..1430 590 96.9 Minus
chrX 22417052 chrX 18670707..18670800 1655..1562 395 94.7 Minus
chrX 22417052 chrX 18670538..18670662 1783..1659 280 81.6 Minus
chrX 22417052 chrX 18670387..18670437 1832..1782 255 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18786599..18787341 1431..689 3715 100 Minus
X 23542271 X 18781914..18782656 1431..689 3610 99.1 Minus
X 23542271 X 18787398..18787918 689..169 2605 100 Minus
X 23542271 X 18782713..18783233 689..169 2530 99 Minus
X 23542271 X 18786138..18786544 1836..1430 2035 100 Minus
X 23542271 X 18787981..18788148 168..1 840 100 Minus
X 23542271 X 18783296..18783460 168..4 780 98.2 Minus
X 23542271 X 18781730..18781859 1559..1430 590 96.9 Minus
X 23542271 X 18781611..18781704 1655..1562 380 93.6 Minus
X 23542271 X 18781442..18781566 1783..1659 295 82.4 Minus
X 23542271 X 18781287..18781341 1836..1782 275 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18794697..18795439 1431..689 3715 100 Minus
X 23527363 X 18790012..18790754 1431..689 3610 99 Minus
X 23527363 X 18795496..18796016 689..169 2605 100 Minus
X 23527363 X 18790811..18791331 689..169 2530 99 Minus
X 23527363 X 18794236..18794642 1836..1430 2035 100 Minus
X 23527363 X 18796079..18796246 168..1 840 100 Minus
X 23527363 X 18791394..18791558 168..4 780 98.1 Minus
X 23527363 X 18789828..18789957 1559..1430 590 96.9 Minus
X 23527363 X 18789709..18789802 1655..1562 380 93.6 Minus
X 23527363 X 18789540..18789664 1783..1659 295 82.4 Minus
X 23527363 X 18789385..18789439 1836..1782 275 100 Minus
Blast to na_te.dros performed 2019-03-16 11:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 4001..4068 1827..1760 124 64.7 Minus

LD35981.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:15:23 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18675698..18676019 1110..1431 100 == Minus
chrX 18675255..18675641 1432..1818 100 <- Minus
chrX 18676073..18676439 690..1056 100 <- Minus
chrX 18676497..18677017 169..689 100 <- Minus
chrX 18677080..18677247 1..168 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:15 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 1..1425 89..1513 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:54 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 1..1425 89..1513 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:37:36 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 1..1425 89..1513 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:55 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 1..1425 89..1513 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:02 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 1..1425 89..1513 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:14 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 58..1889 1..1832 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:54 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 58..1889 1..1832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:36 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 63..1894 1..1832 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:55 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 58..1889 1..1832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:02 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 63..1894 1..1832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:23 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
X 18786142..18786542 1432..1832 100 <- Minus
X 18786599..18787340 690..1431 100 <- Minus
X 18787398..18787918 169..689 100 <- Minus
X 18787981..18788148 1..168 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:23 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
X 18786142..18786542 1432..1832 100 <- Minus
X 18786599..18787340 690..1431 100 <- Minus
X 18787398..18787918 169..689 100 <- Minus
X 18787981..18788148 1..168 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:23 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
X 18786142..18786542 1432..1832 100 <- Minus
X 18786599..18787340 690..1431 100 <- Minus
X 18787398..18787918 169..689 100 <- Minus
X 18787981..18788148 1..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:36 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18680175..18680575 1432..1832 100 <- Minus
arm_X 18680632..18681373 690..1431 100 <- Minus
arm_X 18681431..18681951 169..689 100 <- Minus
arm_X 18682014..18682181 1..168 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:03 Download gff for LD35981.complete
Subject Subject Range Query Range Percent Splice Strand
X 18794240..18794640 1432..1832 100 <- Minus
X 18794697..18795438 690..1431 100 <- Minus
X 18795496..18796016 169..689 100 <- Minus
X 18796079..18796246 1..168 100   Minus

LD35981.pep Sequence

Translation from 88 to 1512

> LD35981.pep
MDIDLSLDEIIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARG
SHSDMPAKRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLER
KKARSAGPILIDDEEESFEPSHRARGKGVHIGQFGHRLSMSNHADGTIQA
KWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLED
EEISRTLHLGQMKQASPRYSIGGLDLNRGDDVEMSMAPLNNKIDNNAFSI
YEAARNRIERPSLTNRLVVGRSNSTKEPLERRHRDTVSTSKLPESLRSRL
FVGKRDPHISHGIYANENRRKAVGGGGGSDSDSGTDSDGDAAAPSKNKRR
SPSPLSLRTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPVYDARVVRP
GTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSR
TVTTNSSGVEVDIDALHSVLFRAR*

LD35981.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19217-PA 497 GF19217-PA 1..497 1..474 1285 58.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18092-PA 474 GG18092-PA 1..474 1..474 1687 70.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12198-PA 470 GH12198-PA 1..470 1..474 1104 51.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-PA 474 CG6961-PA 1..474 1..474 2449 100 Plus
CG18259-PA 474 CG18259-PA 1..474 1..474 2421 98.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10924-PA 466 GI10924-PA 1..466 1..474 991 48.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27008-PA 504 GL27008-PA 4..504 3..474 1095 51.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19986-PA 481 GA19986-PA 4..481 3..474 1126 53.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22784-PA 474 GM22784-PA 1..474 1..474 2123 90.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15615-PA 475 GD15615-PA 1..475 1..474 2090 89.5 Plus
Dsim\GD15616-PA 435 GD15616-PA 1..435 1..474 1724 77.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18567-PA 460 GJ18567-PA 1..460 1..474 1083 53 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24943-PA 449 GK24943-PA 1..449 1..474 888 46.2 Plus
Dwil\GK24883-PA 652 GK24883-PA 361..652 184..474 590 46.3 Plus
Dwil\GK24941-PA 256 GK24941-PA 148..253 366..471 295 53.8 Plus
Dwil\GK24883-PA 652 GK24883-PA 1..81 1..102 225 51 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15488-PA 472 GE15488-PA 1..472 1..474 1693 71.5 Plus

LD35981.hyp Sequence

Translation from 88 to 1512

> LD35981.hyp
MDIDLSLDEIIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARG
SHSDMPAKRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLER
KKARSAGPILIDDEEESFEPSHRARGKGVHIGQFGHRLSMSNHADGTIQA
KWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLED
EEISRTLHLGQMKQASPRYSIGGLDLNRGDDVEMSMAPLNNKIDNNAFSI
YEAARNRIERPSLTNRLVVGRSNSTKEPLERRHRDTVSTSKLPESLRSRL
FVGKRDPHISHGIYANENRRKAVGGGGGSDSDSGTDSDGDAAAPSKNKRR
SPSPLSLRTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPVYDARVVRP
GTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSR
TVTTNSSGVEVDIDALHSVLFRAR*

LD35981.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-PA 474 CG6961-PA 1..474 1..474 2449 100 Plus
CG18259-PA 474 CG18259-PA 1..474 1..474 2421 98.7 Plus