Clone LD36006 Report

Search the DGRC for LD36006

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:360
Well:6
Vector:pOT2
Associated Gene/TranscriptCG2519-RA
Protein status:LD36006.pep: gold
Preliminary Size:4935
Sequenced Size:5659

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2519 2001-01-01 Release 2 assignment
CG2519 2001-07-04 Blastp of sequenced clone
CG2519 2003-01-01 Sim4 clustering to Release 3
CG2519 2008-04-29 Release 5.5 accounting
CG2519 2008-08-15 Release 5.9 accounting
CG2519 2008-12-18 5.12 accounting

Clone Sequence Records

LD36006.complete Sequence

5659 bp (5659 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051864

> LD36006.complete
CAAAAGAGCGTATGTGTATATTTTGTCTGCTCGTTCAATAAAGACGAGAA
ACGGAAAAGCGGAAAAACGCAGCTCTGCGATCTCGCGAATCGCCTCTACG
ATGCCTGCAGCGAGCGCTCCAGAAATTTGATATCAGTAGCGAGATTTACA
TTAAAATTAGAAATGGACACAATACTAGAGTGAAAGGCGGCGCCCAACTA
CCATGCCGTCGGTTCCAGCGCCGGCTGCTGTGCCAGCCACTTTGTCGGTC
AGCGCTTCCGGCACTCAGATGCTGCGCCCTCAGACTCTGGCCGGCCCCGA
GCGGGAGCCTATCGAGTTCAACATCAACCTGGTGGGAGCTCCTCCCGAGG
TGGAGCAGCTGGTGGAGCAGATCAAGAGCGTGGCCGAGCAATTCCTCTAC
CACTGGAAGAGCTTTCCCATTGTTTTGCCTCAGGCGCTGGCTAACAGTGG
TCTGAATTTGACGGCGAGAAACGCGACCAATAGCGTGAGCAGCCGTAAAA
CACGTCCCATTAATCTGCGCGACCTCTTTATAGCGCCTCCCTTTGACGAG
CTGGACGCCGTGGCATCTGACGGGAGCGGAGAGCCCCGCCGGCTGACGAG
CGCCCAGCTGAAGACTCTGCGGGAAACTGGCTTGCAAAAGGATAAATATG
GAAAGCCGAAGAAATTAACTTTGGAACAATTGGAAACAATACGTAAAAAT
GGCGAGTTCGATGTGCCCAGTCTTTATTTTCCTGGCCAGGTGCACAAGTG
GCGTCTGTCCCAAGTACTCCAAAAGGGCAAGCTGCGGGCGCAGGACTCCT
TTCTGAGCGATCTGGCCTTGGCTGCCCGGTTCGTGGTGGTCACTGCCCGA
GCTCGCATCTTCTCCCACTTCTTTTCGGTCGTGCAGGCGATGCACGGCTT
GCTGGAAGCGTTCACCAGACTTGCTGATATGGTCATCGGTGTGCCGGCTC
TTTTGGCCCACAACCTGGACTATAAGATTAAGGAGGAGCGCTGCCGATTT
CTCATAGCCGAGTTGGTTTGTCGGCCCGAATACGAGGATTGTTTACACGG
CCTGTGTTCCTATGTCCGGAAGATGCTGCGTCGCGCTACGATGGAAAAAT
TCGACTTCAACAGCTGCGAGGTCAGCCAGCCCGTACCCTATCTATTCCTC
ACGCCCAAAGGACAGGAGATCGACTTGCGGCTCTTCTGCCGCGACATCAT
GCGCAAAGCACTTCCAATTCTAATTGGCATTCTGGAGCGGGAGACGCGAG
GCTGGTTTCTGCATTTCCGCGAGCGTTTGATTGCCGAGCTGCGTGCCAAA
AAGCTGAACGACAAGGAGATCGAGGAGGAGGTGAACGAAGCTGTCATGAA
GGAGTATCTGCAACGCGTCTACAGCTCAATCATCTCCAATGCAAAGCTGG
GGGAGCTTGGCGCCGGAGTGCCGGAACTCCTGGTGCAGCAGGCCCAGTCG
GTGGTAATTATGTACAAGGCTGTTGACAAGGTGGAGCAGAATATCAAGCG
GACTCGCGAGGACCATCAGAAGTGTCTGGCCAATGACCATTCCGTGTTGT
CGCGGGTTGCCCCCTGGCTGCGCTCCAAGCTGCGCCACGCCGAAGAGAAT
CGGCTCCACAAGAGCGCCTGGTCGGCCCACGAGGAAGCGCTAAAAATGTG
CACCCAACATAACCTGCATCAAACAGCATACTTCCTGTCTCGTGACCTGA
CCTTCATGAAGGAGCGCGAGCCAGTGCTCCTTAAGGAGCTGAAGAACGCC
AAGACTCCCACGCGCAGCTTTCAATGGGCGTGTCGCATCTGGTCGCCACA
GTCGTGGATCATCCGTCGCAACTTCCAGGGTCAGTCTGACGTAATTCCCA
CTGTGATTAGCCAACATGCCACTAGCATAGTCACTCCACGGTCGGATCCC
AGCCAGCCGGTTTTTCTGGTGGAAAAGGAGATACTGCGCACAACAAGCAC
GCGCTGGCCTTTCTGGCGCCTGCTAAACATGATCCAGCGAATCTGGTGCT
GGTCCTGGAACATGATGTTCCTGCTTGGCATACTAGTTCCGTGGTGCAGT
CCCCTCGGACTGCGCGCCCTCTGCTGTGTGAAGCCTTTTATGCCCGACCT
TGAGCTATCGCAAATCAATGGCACACTGTTCCCAAGGAAGACGAGCATAA
CTCAGACTCTGGCGTCACGTCTAATCGAGTTGTGGCGACATATATCGAAG
TCACGTACGCACTTTGAGACAGAACCAGATACGGGCTTTATTGGAAAGGG
ACTGACACGCAATCTGAATCGAACTTGGAACTATTTTGTGAAAGGATTCC
TAGGTACGATCGTCATTTTATTCGCCTTCCCCCTTATCTGTTTGGCCGCT
AGCTTGCTAAGCATTTGTCTGGCTGTGACTGCGCCCCTATGGATTCCCGT
GTTCGTGCTACTACTCCACATCTACATGATCCTCATATATGATTTGGATG
CACCTGATAATACGAAGAATCGATACTGCATCCTATTGGAAGCCATAGTT
TGGAATCTTCTCATACAGGGATTGCTCCAGCCGGTGGCGGCGATTCTAAT
GGCCACGCTGGTCTGTCCATTGGCAGCAGGAGTCGTGTTTATAGTTGGGG
TCATCCGGTATTCCCTACGGCTGGTGTGGGACTCTCTTACCTACCATTTG
TTTATCAAGAAGTGTGGACGTGTACCGGCTTCGGATAGCATTGCTGTAAA
ACGAATTGCTGGACCTGGACTGGCATTAGACTATTATTTCATAATCAGAC
CGGAGCAGGCATTGGCTGCACTGGAGGCTAAAATGGAACTGGACGAGTTG
CAGGCCTACCAGCATGCCACGGAGCGAGTGGTGTTGCAGCCACAGCAGGA
TTTCCTCCAGTTTGTCGAGGCTTGCTTTGGGCCGTTTTCAGCCCAAATCA
GTAAAACTGGACCGTACTTATCGCTGGACCGGGAGGCGCAGGATCTGATG
AGTACGCTACACGAGAAGTTAGAGAAGCGACGAAGGGAGTTGCAGACGGC
GCTGACCACCCAAGTCAAATCTCGCATAAAGTTAAATACCAAAGAATTAA
AGATTGCTATACAACTGGCCGCCCATATTTTAGAGAAATATTATCCGTCT
CATGTCATCGGCAGACTGTCCATTAGCGAAGAAGAATTTTGGGATAATAA
AGGTCTCACGGTAAACGACTGGCCGGGACTGGCTGGTCTTATATACACCG
ACATATTTAGTCTAGATTTTCTAACGCCATTGACTGAACACGATACACAT
TTTAAACTAGAACCACATGCCTCGCTCGACCTTATGCGTTATACGGAGAT
GGTGAAGAATGCAAACGATGTGATTGGCTCCAAGGGCCTGGATCTGCTCG
GCAATGTGTACGCCCCGCGTGGCAACGTTCAAGTGCATCTGCCCTTCCTC
GAAGTGACTGCATTCAATCCACGCTCCCGCATAACGCTCACCTTCCGCAA
GCCCGAGAAAAGGGATATGTCTGTGGGATTGACCACACCGAGGGTGCGTG
CCCACCGTGCCCAGCATGTGCCGAAGACTTTACAAGAAGGCCAGAAGTCC
TGGCGACCGTGGAAGCAGCAAAGCGGAGAGAAGAGCGTTACGGAAAAGCT
GCTCATCCCATTGCCAGTGCCCCATCCCGTTCACATTGCTATTGCCATTT
ACAATCGCGACACCGAACAGCCCATCCCCTTGGACTCGGAGCTGGTCTGG
GAAATTCTTAAATCGATAGAGGACTGCCAAGGCGGCGATGCCATGGCTGT
CCAGGCTGTGGCGCGTTATCGGGGAGCGGTCATTGAATCGAGCAATGACT
CGCTGGCCAGCAGCAGCAGCATTGGCAGTACTCGTGACTCGGGATCAGGT
TCTGTGTCGGGCTCGGCACTGGGCAACGGTACAGAAACCCTTCCATGCGG
CAATCGAGAGGTCTGCACCCAGGTTAAGGTGGACACCGAGCCGGCTGCCA
GCTCCTCTGGTTTCCATTGGACTCTAAGCAACTGGGGCGCAGCGCAAACG
GCACGACGTCGAACCAACTCTAATGTGCGCGTGGACTTGGCCAGTCCCGA
AGATATATCCTTGGATACGGATAGTTCGCGTGCCGTTTTCAACAACGCGT
ACGGCACAACTGTCTAAAATGCTTTATTGGTTTGGGCACACAAGAATATA
TTAACCTATCAACTCATATAGATTTCTCGTGGCTGCTCGCTGTTGAAAAA
AATCCGTTCTATCGAATGAAATCTCGAATATTGTGTTATTAAAGCGATGT
TTTAAAAAGGAATCCGATTGTTCACACAAGAGTCCGAATCTCAATTAGAA
AAACAAAATTACAGACCAGGGAACAATCGTAAATACTTCAAATTTTCTTC
CCTTCTCAATATGAAATCCAAGGCAGCTAGCTAAAGTGTAATAAGAGCAA
ATTTATCTAACTATATTTACAGTATATGATATACATATATGATTCGGTAA
TCTACACCGCATAGGCGAAAAATCGAAAAGTAAAAACTTCAATCTAGTCG
CAAGCAAATTTTATGCAGCAATCTAATTCGTTTTCGTATGCAATCTATAG
GCATATTCTAATCAAAGCTTCATGACAGTTTTACATCCGAGTTTAGTTTA
TTGCGATATCCGTTCTAAAAGCCAATAAAGAAACATAATTATTGATTAGG
TATACAACATAAGCCATGAGATTTTTCTTTGTACCTAACCAACAACAAAC
ATTTAAGTTTAACACATTTAAGGATAAACTTTATATTATAAAAATTCCAC
GAAGTGTACCATGAGCAGTTAAACAAATATTGTTGATTAATAACTAATTT
ATTCATATACACGCAAACTGTCAGGCTAATAATGTTTTCTCGACTTCTTC
CGAAATACGAATCTCAAAATATTAATAAAAGTGAGTAGAACAATGCAATA
GTATTGCATCGAAAGCATAGATAACAACATTAAAAAATGTCAGCGTAAAG
AACTTATAAAAACATATAATAGGCCAAGAATAAAACATTTTTACATTTAT
ATATGCATATTTAGATCACATAATCGTAAAACACAACTGTTGATGCCTTT
GTATCGAACATTTTCCAACCGGGCTTACATGCTAAATTCCAATTTGACTC
CATCCCCAGAGCAACAAGCCCTCCAAGTATTTCCCATACGGAGAGAATTA
TGAAAACAAATATGTTAAACTGCCACAAATCAAAGTATTACTTTTCCTTC
AATCCACTCCACGCACTGCTCACGATCAATTCAACATATTATATCCCTTC
GGCCGCTTCCAGTGTTATGTTTAAGCCGTTCAACTGATTTTGTAAACTTT
TTATTATTTAAATGTCGAAATGCAAACACCAGCAATGGAATGAATCTTTA
CATACAAATATACAAACATTTACATAACTATGTAGTTATACAAATTAAAC
GATGGAAACCCCGCAAACGGTAAATCTCATGAAAATGCATTCAACAATTT
TATGTAAAATGTTTATTAATATTAAAGAAAAAATGTATCAATAAATTATG
AATGTATGTGAGCTCGCAACTTTATAAGCAATGTTTAGACGCAGGAATTT
CGAAAATAAAAAAGAGTTTCTAACGACTTATAGAGTTGCAAGCACAATAG
TAGTTTAATATGTAATAATAAAAATGTTGGCTAAAAATTAAAAAAAAAAA
AAAAAAAAA

LD36006.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2519-RA 5832 CG2519-RA 155..5797 1..5640 28145 99.9 Plus
CG2519-RB 5760 CG2519-RB 781..5725 696..5640 24710 99.9 Plus
CG2519-RB 5760 CG2519-RB 155..788 1..631 3100 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1365169..1366899 5639..3909 8655 100 Minus
chr3R 27901430 chr3R 1369024..1370235 2235..1024 6060 100 Minus
chr3R 27901430 chr3R 1368077..1368537 3052..2592 2305 100 Minus
chr3R 27901430 chr3R 1368595..1368955 2594..2234 1805 100 Minus
chr3R 27901430 chr3R 1370406..1370728 1024..702 1615 100 Minus
chr3R 27901430 chr3R 1367550..1367861 3463..3152 1560 100 Minus
chr3R 27901430 chr3R 1367212..1367497 3746..3461 1430 100 Minus
chr3R 27901430 chr3R 1372115..1372395 422..142 1405 100 Minus
chr3R 27901430 chr3R 1371852..1372060 630..422 1045 100 Minus
chr3R 27901430 chr3R 1366986..1367153 3912..3745 840 100 Minus
chr3R 27901430 chr3R 1373266..1373411 143..1 650 97.9 Minus
chr3R 27901430 chr3R 1367926..1368028 3152..3050 515 100 Minus
chr3R 27901430 chr3R 1371330..1371402 702..630 365 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5539509..5541240 5640..3909 8660 100 Minus
3R 32079331 3R 5543365..5544576 2235..1024 6060 100 Minus
3R 32079331 3R 5542418..5542878 3052..2592 2305 100 Minus
3R 32079331 3R 5542936..5543296 2594..2234 1805 100 Minus
3R 32079331 3R 5544747..5545069 1024..702 1615 100 Minus
3R 32079331 3R 5541891..5542202 3463..3152 1560 100 Minus
3R 32079331 3R 5541553..5541838 3746..3461 1430 100 Minus
3R 32079331 3R 5546456..5546736 422..142 1405 100 Minus
3R 32079331 3R 5546193..5546401 630..422 1045 100 Minus
3R 32079331 3R 5541327..5541494 3912..3745 840 100 Minus
3R 32079331 3R 5547607..5547752 143..1 650 97.9 Minus
3R 32079331 3R 5542267..5542369 3152..3050 515 100 Minus
3R 32079331 3R 5545671..5545743 702..630 365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5280340..5282071 5640..3909 8660 100 Minus
3R 31820162 3R 5284196..5285407 2235..1024 6060 100 Minus
3R 31820162 3R 5283249..5283709 3052..2592 2305 100 Minus
3R 31820162 3R 5283767..5284127 2594..2234 1805 100 Minus
3R 31820162 3R 5285578..5285900 1024..702 1615 100 Minus
3R 31820162 3R 5282722..5283033 3463..3152 1560 100 Minus
3R 31820162 3R 5282384..5282669 3746..3461 1430 100 Minus
3R 31820162 3R 5287287..5287567 422..142 1405 100 Minus
3R 31820162 3R 5287024..5287232 630..422 1045 100 Minus
3R 31820162 3R 5282158..5282325 3912..3745 840 100 Minus
3R 31820162 3R 5288438..5288583 143..1 660 97.9 Minus
3R 31820162 3R 5283098..5283200 3152..3050 515 100 Minus
3R 31820162 3R 5286502..5286574 702..630 365 100 Minus
Blast to na_te.dros performed 2019-03-16 02:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 2267..2323 4686..4745 131 71.7 Plus
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 5838..6111 5339..5619 127 55.7 Plus

LD36006.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:59:36 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1365169..1366897 3911..5639 100 <- Minus
chr3R 1366988..1367152 3746..3910 100 <- Minus
chr3R 1367213..1367495 3463..3745 100 <- Minus
chr3R 1367551..1367861 3152..3462 100 <- Minus
chr3R 1367927..1368025 3053..3151 100 <- Minus
chr3R 1368077..1368534 2595..3052 100 <- Minus
chr3R 1368595..1368954 2235..2594 100 <- Minus
chr3R 1369025..1370234 1025..2234 100 <- Minus
chr3R 1370406..1370727 703..1024 100 <- Minus
chr3R 1371330..1371401 631..702 100 <- Minus
chr3R 1371852..1372059 423..630 100 <- Minus
chr3R 1372115..1372393 144..422 100 <- Minus
chr3R 1373266..1373411 1..143 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:19 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 1..3915 203..4117 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:47:04 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 1..3915 203..4117 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:50 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 1..3915 203..4117 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:41:09 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 1..3915 203..4117 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:27:14 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 1..3915 203..4117 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:31:05 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 17..5658 1..5639 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:47:04 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 17..5658 1..5639 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:50 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 24..5665 1..5639 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:41:09 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 17..5658 1..5639 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:27:14 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
CG2519-RA 24..5665 1..5639 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:36 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5541554..5541836 3463..3745 100 <- Minus
3R 5541892..5542202 3152..3462 100 <- Minus
3R 5542268..5542366 3053..3151 100 <- Minus
3R 5539510..5541238 3911..5639 100 <- Minus
3R 5541329..5541493 3746..3910 100 <- Minus
3R 5542418..5542875 2595..3052 100 <- Minus
3R 5542936..5543295 2235..2594 100 <- Minus
3R 5543366..5544575 1025..2234 100 <- Minus
3R 5544747..5545068 703..1024 100 <- Minus
3R 5545671..5545742 631..702 100 <- Minus
3R 5546193..5546400 423..630 100 <- Minus
3R 5546456..5546734 144..422 100 <- Minus
3R 5547607..5547752 1..143 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:36 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5541554..5541836 3463..3745 100 <- Minus
3R 5541892..5542202 3152..3462 100 <- Minus
3R 5542268..5542366 3053..3151 100 <- Minus
3R 5539510..5541238 3911..5639 100 <- Minus
3R 5541329..5541493 3746..3910 100 <- Minus
3R 5542418..5542875 2595..3052 100 <- Minus
3R 5542936..5543295 2235..2594 100 <- Minus
3R 5543366..5544575 1025..2234 100 <- Minus
3R 5544747..5545068 703..1024 100 <- Minus
3R 5545671..5545742 631..702 100 <- Minus
3R 5546193..5546400 423..630 100 <- Minus
3R 5546456..5546734 144..422 100 <- Minus
3R 5547607..5547752 1..143 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:59:36 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5541554..5541836 3463..3745 100 <- Minus
3R 5541892..5542202 3152..3462 100 <- Minus
3R 5542268..5542366 3053..3151 100 <- Minus
3R 5539510..5541238 3911..5639 100 <- Minus
3R 5541329..5541493 3746..3910 100 <- Minus
3R 5542418..5542875 2595..3052 100 <- Minus
3R 5542936..5543295 2235..2594 100 <- Minus
3R 5543366..5544575 1025..2234 100 <- Minus
3R 5544747..5545068 703..1024 100 <- Minus
3R 5545671..5545742 631..702 100 <- Minus
3R 5546193..5546400 423..630 100 <- Minus
3R 5546456..5546734 144..422 100 <- Minus
3R 5547607..5547752 1..143 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:50 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1365232..1366960 3911..5639 100 <- Minus
arm_3R 1367051..1367215 3746..3910 100 <- Minus
arm_3R 1367276..1367558 3463..3745 100 <- Minus
arm_3R 1367614..1367924 3152..3462 100 <- Minus
arm_3R 1367990..1368088 3053..3151 100 <- Minus
arm_3R 1368140..1368597 2595..3052 100 <- Minus
arm_3R 1368658..1369017 2235..2594 100 <- Minus
arm_3R 1369088..1370297 1025..2234 100 <- Minus
arm_3R 1370469..1370790 703..1024 100 <- Minus
arm_3R 1371393..1371464 631..702 100 <- Minus
arm_3R 1371915..1372122 423..630 100 <- Minus
arm_3R 1372178..1372456 144..422 100 <- Minus
arm_3R 1373329..1373474 1..143 97   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:32:45 Download gff for LD36006.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5282160..5282324 3746..3910 100 <- Minus
3R 5280341..5282069 3911..5639 100 <- Minus
3R 5282385..5282667 3463..3745 100 <- Minus
3R 5282723..5283033 3152..3462 100 <- Minus
3R 5283099..5283197 3053..3151 100 <- Minus
3R 5283249..5283706 2595..3052 100 <- Minus
3R 5283767..5284126 2235..2594 100 <- Minus
3R 5284197..5285406 1025..2234 100 <- Minus
3R 5285578..5285899 703..1024 100 <- Minus
3R 5286502..5286573 631..702 100 <- Minus
3R 5287024..5287231 423..630 100 <- Minus
3R 5287287..5287565 144..422 100 <- Minus
3R 5288438..5288583 1..143 97   Minus

LD36006.pep Sequence

Translation from 202 to 4116

> LD36006.pep
MPSVPAPAAVPATLSVSASGTQMLRPQTLAGPEREPIEFNINLVGAPPEV
EQLVEQIKSVAEQFLYHWKSFPIVLPQALANSGLNLTARNATNSVSSRKT
RPINLRDLFIAPPFDELDAVASDGSGEPRRLTSAQLKTLRETGLQKDKYG
KPKKLTLEQLETIRKNGEFDVPSLYFPGQVHKWRLSQVLQKGKLRAQDSF
LSDLALAARFVVVTARARIFSHFFSVVQAMHGLLEAFTRLADMVIGVPAL
LAHNLDYKIKEERCRFLIAELVCRPEYEDCLHGLCSYVRKMLRRATMEKF
DFNSCEVSQPVPYLFLTPKGQEIDLRLFCRDIMRKALPILIGILERETRG
WFLHFRERLIAELRAKKLNDKEIEEEVNEAVMKEYLQRVYSSIISNAKLG
ELGAGVPELLVQQAQSVVIMYKAVDKVEQNIKRTREDHQKCLANDHSVLS
RVAPWLRSKLRHAEENRLHKSAWSAHEEALKMCTQHNLHQTAYFLSRDLT
FMKEREPVLLKELKNAKTPTRSFQWACRIWSPQSWIIRRNFQGQSDVIPT
VISQHATSIVTPRSDPSQPVFLVEKEILRTTSTRWPFWRLLNMIQRIWCW
SWNMMFLLGILVPWCSPLGLRALCCVKPFMPDLELSQINGTLFPRKTSIT
QTLASRLIELWRHISKSRTHFETEPDTGFIGKGLTRNLNRTWNYFVKGFL
GTIVILFAFPLICLAASLLSICLAVTAPLWIPVFVLLLHIYMILIYDLDA
PDNTKNRYCILLEAIVWNLLIQGLLQPVAAILMATLVCPLAAGVVFIVGV
IRYSLRLVWDSLTYHLFIKKCGRVPASDSIAVKRIAGPGLALDYYFIIRP
EQALAALEAKMELDELQAYQHATERVVLQPQQDFLQFVEACFGPFSAQIS
KTGPYLSLDREAQDLMSTLHEKLEKRRRELQTALTTQVKSRIKLNTKELK
IAIQLAAHILEKYYPSHVIGRLSISEEEFWDNKGLTVNDWPGLAGLIYTD
IFSLDFLTPLTEHDTHFKLEPHASLDLMRYTEMVKNANDVIGSKGLDLLG
NVYAPRGNVQVHLPFLEVTAFNPRSRITLTFRKPEKRDMSVGLTTPRVRA
HRAQHVPKTLQEGQKSWRPWKQQSGEKSVTEKLLIPLPVPHPVHIAIAIY
NRDTEQPIPLDSELVWEILKSIEDCQGGDAMAVQAVARYRGAVIESSNDS
LASSSSIGSTRDSGSGSVSGSALGNGTETLPCGNREVCTQVKVDTEPAAS
SSGFHWTLSNWGAAQTARRRTNSNVRVDLASPEDISLDTDSSRAVFNNAY
GTTV*

LD36006.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16043-PA 1315 GF16043-PA 29..1315 18..1304 6480 94.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10971-PA 1310 GG10971-PA 9..1310 3..1304 6828 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18991-PA 1317 GH18991-PA 11..1317 1..1304 6257 90.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2519-PA 1304 CG2519-PA 1..1304 1..1304 6753 100 Plus
CG2519-PC 1280 CG2519-PC 1..1280 1..1304 6580 97.9 Plus
CG2519-PB 1280 CG2519-PB 1..1280 1..1304 6580 97.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24493-PA 1311 GI24493-PA 20..1311 15..1304 6192 90.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22158-PA 1308 GL22158-PA 21..1308 17..1304 6490 95.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15383-PA 1308 GA15383-PA 21..1308 17..1304 6484 95.2 Plus
Dpse\GA15383-PB 1284 GA15383-PB 21..1284 17..1304 6312 93 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10625-PA 1293 GM10625-PA 9..1293 3..1304 6757 97.4 Plus
Dsec\GM17856-PA 274 GM17856-PA 1..274 1028..1304 1437 98.2 Plus
Dsec\GM16387-PA 173 GM16387-PA 19..173 13..167 743 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19610-PA 1310 GD19610-PA 9..1310 3..1304 6910 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24558-PA 960 GJ24558-PA 5..607 11..612 2927 89.9 Plus
Dvir\GJ24558-PA 960 GJ24558-PA 607..960 951..1304 1655 92.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12174-PA 1308 GK12174-PA 21..1308 20..1304 6254 91.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25272-PA 1310 GE25272-PA 9..1310 3..1304 6787 97 Plus

LD36006.hyp Sequence

Translation from 202 to 4116

> LD36006.hyp
MPSVPAPAAVPATLSVSASGTQMLRPQTLAGPEREPIEFNINLVGAPPEV
EQLVEQIKSVAEQFLYHWKSFPIVLPQALANSGLNLTARNATNSVSSRKT
RPINLRDLFIAPPFDELDAVASDGSGEPRRLTSAQLKTLRETGLQKDKYG
KPKKLTLEQLETIRKNGEFDVPSLYFPGQVHKWRLSQVLQKGKLRAQDSF
LSDLALAARFVVVTARARIFSHFFSVVQAMHGLLEAFTRLADMVIGVPAL
LAHNLDYKIKEERCRFLIAELVCRPEYEDCLHGLCSYVRKMLRRATMEKF
DFNSCEVSQPVPYLFLTPKGQEIDLRLFCRDIMRKALPILIGILERETRG
WFLHFRERLIAELRAKKLNDKEIEEEVNEAVMKEYLQRVYSSIISNAKLG
ELGAGVPELLVQQAQSVVIMYKAVDKVEQNIKRTREDHQKCLANDHSVLS
RVAPWLRSKLRHAEENRLHKSAWSAHEEALKMCTQHNLHQTAYFLSRDLT
FMKEREPVLLKELKNAKTPTRSFQWACRIWSPQSWIIRRNFQGQSDVIPT
VISQHATSIVTPRSDPSQPVFLVEKEILRTTSTRWPFWRLLNMIQRIWCW
SWNMMFLLGILVPWCSPLGLRALCCVKPFMPDLELSQINGTLFPRKTSIT
QTLASRLIELWRHISKSRTHFETEPDTGFIGKGLTRNLNRTWNYFVKGFL
GTIVILFAFPLICLAASLLSICLAVTAPLWIPVFVLLLHIYMILIYDLDA
PDNTKNRYCILLEAIVWNLLIQGLLQPVAAILMATLVCPLAAGVVFIVGV
IRYSLRLVWDSLTYHLFIKKCGRVPASDSIAVKRIAGPGLALDYYFIIRP
EQALAALEAKMELDELQAYQHATERVVLQPQQDFLQFVEACFGPFSAQIS
KTGPYLSLDREAQDLMSTLHEKLEKRRRELQTALTTQVKSRIKLNTKELK
IAIQLAAHILEKYYPSHVIGRLSISEEEFWDNKGLTVNDWPGLAGLIYTD
IFSLDFLTPLTEHDTHFKLEPHASLDLMRYTEMVKNANDVIGSKGLDLLG
NVYAPRGNVQVHLPFLEVTAFNPRSRITLTFRKPEKRDMSVGLTTPRVRA
HRAQHVPKTLQEGQKSWRPWKQQSGEKSVTEKLLIPLPVPHPVHIAIAIY
NRDTEQPIPLDSELVWEILKSIEDCQGGDAMAVQAVARYRGAVIESSNDS
LASSSSIGSTRDSGSGSVSGSALGNGTETLPCGNREVCTQVKVDTEPAAS
SSGFHWTLSNWGAAQTARRRTNSNVRVDLASPEDISLDTDSSRAVFNNAY
GTTV*

LD36006.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2519-PA 1304 CG2519-PA 1..1304 1..1304 6753 100 Plus
CG2519-PC 1280 CG2519-PC 1..1280 1..1304 6580 97.9 Plus
CG2519-PB 1280 CG2519-PB 1..1280 1..1304 6580 97.9 Plus