Clone LD36009 Report

Search the DGRC for LD36009

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:360
Well:9
Vector:pOT2
Associated Gene/Transcriptlace-RA
Protein status:LD36009.pep: gold
Preliminary Size:2799
Sequenced Size:2589

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4162 2001-01-01 Release 2 assignment
CG4162 2002-04-06 Blastp of sequenced clone
CG4162 2003-01-01 Sim4 clustering to Release 3
lace 2008-04-29 Release 5.5 accounting
lace 2008-08-15 Release 5.9 accounting
lace 2008-12-18 5.12 accounting

Clone Sequence Records

LD36009.complete Sequence

2589 bp (2589 high quality bases) assembled on 2002-04-06

GenBank Submission: AY095191

> LD36009.complete
CAAAACGCATCGATCTCTCCGTAATTTTTTGTCCGCTGAGTAATCGGAAA
TCGGCAACGGAATAATGGGCAATTTCGACGGCGATTCTGGAACGGTTTTC
GAGCAGAGCTATGCGACGACCAACGGAAACGGAAAGGTGCCGAATGGCAA
TGGGGCGGCAGATCTCAGTGCCCCGGAAAAACAGGAACTTCTCCGGAAGT
TCTCGGCACCCGCGTACACTGAAATTCGCACGCGACGCTGCCAGCCGAAG
CCCGCAAACGACGCCCAGAGTCCCAGCTCGATCAACTACCATCCGGAAAA
GAAGTCGATCCCCAATGGGCATGCCTCCATTCTGGATCAGGAGTCCAAGC
CCAACCAGGCAGAGGGCAAACTTTCGCCGGAGCTGGAGCACTTCCAGAAA
ACCTCCTTTGAGGAGGTGCCTTTGCACACGGCCTGCCTTACGTATTTGGG
ATTCTATCTACTGATGATCCTGGGCTACATCAACCAGTTGCTCTTCGTGC
CCAAAGTGGCCACCGAGAAGGGTCGGGATGGCTATGTAGCCCTCTACGAT
GCCTTCGAAAGCTTCTACTCGAGGTACGTTTACAGGAGAATCAAGGATTG
CTGGAACCGACCCATCTGCAGTGTTCCGGGAGACGAACTCACTCTAAAGG
ATCGCGTAACCGATGATTATGGATGGAGTTTCAAGTTCACTGGAACGGAG
ACACGTTGCTTAAATCTGGGATCCTACAATTACCTGGGATTTGCCGCCGC
TACTGGACAGTGTGCTGATGATTCAGAGGAAAGTGCTCGGAGCTCTGGAC
TGGCATACTGCAGCTCCCGTTGTGAGCTTGGTGACAACGAGCAGCTGCAA
GAGCTGGAGGCTCTAACTGCCAGATACTTTGGCGTGGAGGATGCCATTGT
CTTTGGAATGGGTTTCGCCACAAATGCGTTGAACCTTCCCTCACTGCTGG
GACCCAACAGTCTTGTGATTAGTGACGAAAAGAATCACGCCTCCATCATT
TTGGGACTGCGTTTGTCCGGGGCCACCACCAAGGTCTTTAAGCACAACAA
CATGCGCGATCTGGAGCGCGTCCTCCGTCAGGGTGTGTGCTATGGAAATC
CCAAAAAAGGTGGTCAGCCATGGGACAAGGTTATGATCTTGGTCGAGGGC
ATCTTCAGCATGGAGGGGTCCATAGTCCGTTTGCCCGAGGTTATTGCTCT
GAAAAAGAAATACAAAGCATACTTGTATTTGGATGAAGCTCACAGCGTGG
GAGCCATGGGTTCCCGTGGACGAGGAGTTACAGATTATTTTAATGTGGAT
CCGAAGGAGGTGGACATTCTGATGGGCACCTTCACCAAAAGTTTTGGCAG
TGCTGGAGGCTATCTCGCTGGATCCAAGAAACTGATTGACTTTCTCCGCA
CCAACAGCCACGCCCATTGTTATGCTGCTTCGATCTCGCCACCCATCGCA
CAGCAAATCCTTACCTCCATGAAGACCATTATGGGTGAAGATGGCACTGA
CATTGGACGCAAGAAGATCCACCAGCTGGCCAGGAACACACGTTACTTCC
GCCGACGTCTGGCTCAGCTGGGAGTGATCACATACGGTCACGAGGACTCC
CCAGTCGTGCCCATGCTGGTGTACCTGTTTTCCAAGATTGGCGCTGTGGT
TCGCACCTTGACGACTCGCCACATTGCCGCGGTGGGAGCTGGATTCCCGG
CCACACCCATCATGGAAGGACGCATCCGATTCTGCCTTTCAGCCGCCCAC
ACCAAGGAGCAGCTGGACTTTGCCCTGGAGGCGATAGACGAGATTGCCGA
TGATCTGGGCCTAAAGTATTCTCGCAAGCCACGCGATCCGAATCCCGTCA
TTTACTAGAATCACACGCACACACATAGAAGTTAAGCTTGGGGAAATGGT
AACCTCCCCGATTGGTAAACCAAAACTACAACACAGTCCAGATAGTGCTA
AATCAATCACGAACGGTGGCTTACATTGACCAAGTTTCAGTTGCACTGGG
CTTCTATTTATGACTAATTCTCTGGTTATATGCCTTAAAAGGGAAGATCA
CTACAGCAACAGAAACAAAACACTACAGCACATAGCTTAAATGATAAAAT
ATTATTAATTATTTAGCATTTACCTCTACGTAGTTGTTATTGTATATGTA
AAATCCAATCGTCTTCTTTGGTCGGCTGCTGCATTTTAAGTATTTATAGA
AGAGAAAATGACAGCGCAATGTATTGGGCAAATCAGGGTTTGGTTACTTT
TATAGCTAAGCTAAGGGAAGCCCCTTTTTCGTGGGAAAGCCTCGAGCACC
TCGCTTCTACCAATTAAGCATACTAAGCTGAGCCAAATGTAACGTCTAAA
GAGTCAGCGATACAATTGTAAATCACTATTTGGGTAAGTCTTCGGGGGAC
CCAAAAATTGGGTCAACTTTAGGGCATTGTCAGGAAATATATATGTATAA
TAATTATGTATTATTGATCTTATTTTTCCACCAAAAAAATAAAGAAATTG
TTGCTTTATCTAATAAACTATATTGGAATAGCTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD36009.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
lace-RA 3074 lace-RA 71..2605 1..2535 12675 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15500810..15501922 266..1378 5535 99.8 Plus
chr2L 23010047 chr2L 15502394..15503284 1641..2531 4440 99.9 Plus
chr2L 23010047 chr2L 15497855..15498122 1..268 1340 100 Plus
chr2L 23010047 chr2L 15501985..15502249 1377..1641 1325 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15502114..15503226 266..1378 5565 100 Plus
2L 23513712 2L 15503698..15504592 1641..2535 4475 100 Plus
2L 23513712 2L 15499157..15499424 1..268 1340 100 Plus
2L 23513712 2L 15503289..15503553 1377..1641 1325 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15502114..15503226 266..1378 5565 100 Plus
2L 23513712 2L 15503698..15504592 1641..2535 4475 100 Plus
2L 23513712 2L 15499157..15499424 1..268 1340 100 Plus
2L 23513712 2L 15503289..15503553 1377..1641 1325 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:27:48 has no hits.

LD36009.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:28:28 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15497855..15498122 1..268 100 -> Plus
chr2L 15500813..15501922 269..1378 99 -> Plus
chr2L 15501987..15502249 1379..1641 100 -> Plus
chr2L 15502395..15503287 1642..2534 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:20 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 1..1794 65..1858 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:12:04 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 1..1794 65..1858 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:10:54 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 1..1794 65..1858 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:24 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 1..1794 65..1858 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:06:14 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 1..1794 65..1858 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:45:15 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 48..2581 1..2534 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:12:04 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 48..2581 1..2534 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:10:54 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 31..2564 1..2534 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:24 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 48..2581 1..2534 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:06:14 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
lace-RA 31..2564 1..2534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:28:28 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15499157..15499424 1..268 100 -> Plus
2L 15502117..15503226 269..1378 100 -> Plus
2L 15503291..15503553 1379..1641 100 -> Plus
2L 15503699..15504591 1642..2534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:28:28 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15499157..15499424 1..268 100 -> Plus
2L 15502117..15503226 269..1378 100 -> Plus
2L 15503291..15503553 1379..1641 100 -> Plus
2L 15503699..15504591 1642..2534 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:28:28 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15499157..15499424 1..268 100 -> Plus
2L 15502117..15503226 269..1378 100 -> Plus
2L 15503291..15503553 1379..1641 100 -> Plus
2L 15503699..15504591 1642..2534 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:10:54 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15499157..15499424 1..268 100 -> Plus
arm_2L 15502117..15503226 269..1378 100 -> Plus
arm_2L 15503291..15503553 1379..1641 100 -> Plus
arm_2L 15503699..15504591 1642..2534 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:28:51 Download gff for LD36009.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15499157..15499424 1..268 100 -> Plus
2L 15502117..15503226 269..1378 100 -> Plus
2L 15503291..15503553 1379..1641 100 -> Plus
2L 15503699..15504591 1642..2534 100   Plus

LD36009.pep Sequence

Translation from 64 to 1857

> LD36009.pep
MGNFDGDSGTVFEQSYATTNGNGKVPNGNGAADLSAPEKQELLRKFSAPA
YTEIRTRRCQPKPANDAQSPSSINYHPEKKSIPNGHASILDQESKPNQAE
GKLSPELEHFQKTSFEEVPLHTACLTYLGFYLLMILGYINQLLFVPKVAT
EKGRDGYVALYDAFESFYSRYVYRRIKDCWNRPICSVPGDELTLKDRVTD
DYGWSFKFTGTETRCLNLGSYNYLGFAAATGQCADDSEESARSSGLAYCS
SRCELGDNEQLQELEALTARYFGVEDAIVFGMGFATNALNLPSLLGPNSL
VISDEKNHASIILGLRLSGATTKVFKHNNMRDLERVLRQGVCYGNPKKGG
QPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEAHSVGAMGS
RGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHA
HCYAASISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLA
QLGVITYGHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAAVGAGFPATPIM
EGRIRFCLSAAHTKEQLDFALEAIDEIADDLGLKYSRKPRDPNPVIY*

LD36009.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13862-PA 552 GF13862-PA 22..552 68..597 2607 90.6 Plus
Dana\GF18993-PA 557 GF18993-PA 1..557 1..597 2465 78.6 Plus
Dana\GF24511-PA 411 GF24511-PA 43..407 198..581 461 30.9 Plus
Dana\GF11943-PA 468 GF11943-PA 81..399 198..515 407 32.8 Plus
Dana\GF12883-PA 546 GF12883-PA 153..515 220..597 321 26.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25163-PA 592 GG25163-PA 1..592 1..597 3135 97.5 Plus
Dere\GG13887-PA 417 GG13887-PA 49..413 198..581 459 30.4 Plus
Dere\GG20359-PA 468 GG20359-PA 55..389 174..514 419 32.1 Plus
Dere\GG22911-PA 537 GG22911-PA 144..506 220..597 321 26.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13758-PA 630 GH13758-PA 1..630 1..597 2463 73.7 Plus
Dgri\GH16379-PA 420 GH16379-PA 52..416 198..581 468 31.4 Plus
Dgri\GH20070-PA 468 GH20070-PA 96..394 215..519 382 30.8 Plus
Dgri\GH20180-PA 541 GH20180-PA 183..510 256..597 335 28.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
lace-PB 597 CG4162-PB 1..597 1..597 3124 100 Plus
lace-PA 597 CG4162-PA 1..597 1..597 3124 100 Plus
CG10361-PA 417 CG10361-PA 49..413 198..581 451 30.4 Plus
Spt-I-PC 468 CG4016-PC 96..467 215..581 408 29.6 Plus
Spt-I-PA 468 CG4016-PA 96..467 215..581 408 29.6 Plus
Spt-I-PB 468 CG4016-PB 96..467 215..581 408 29.6 Plus
Alas-PA 539 CG3017-PA 146..508 220..597 310 26.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17899-PA 625 GI17899-PA 1..625 1..597 2480 75.2 Plus
Dmoj\GI11571-PA 412 GI11571-PA 44..408 198..581 480 31.4 Plus
Dmoj\GI18787-PA 465 GI18787-PA 93..346 215..469 400 34.6 Plus
Dmoj\GI20706-PA 538 GI20706-PA 145..507 220..597 343 27.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26430-PA 562 GL26430-PA 30..562 68..597 2577 88.7 Plus
Dper\GL20821-PA 397 GL20821-PA 75..393 245..581 448 33.4 Plus
Dper\GL16797-PA 468 GL16797-PA 96..388 215..513 398 32.1 Plus
Dper\GL11642-PA 538 GL11642-PA 180..507 256..597 316 27.5 Plus
Dper\GL16622-PA 89 GL16622-PA 1..61 1..68 159 52.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17997-PA 593 GA17997-PA 1..593 1..597 2745 85 Plus
Dpse\GA10272-PA 417 GA10272-PA 49..413 198..581 481 32.2 Plus
Dpse\GA24298-PA 468 GA24298-PA 96..349 215..469 397 34.2 Plus
Dpse\GA15694-PA 538 GA15694-PA 180..507 256..597 315 27.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16091-PA 597 GM16091-PA 1..597 1..597 3172 98.7 Plus
Dsec\GM24709-PA 417 GM24709-PA 49..413 198..581 463 30.6 Plus
Dsec\GM21446-PA 468 GM21446-PA 55..389 174..514 403 31.5 Plus
Dsec\GM16072-PA 535 GM16072-PA 142..504 220..597 320 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24010-PA 597 GD24010-PA 1..597 1..597 3181 98.8 Plus
Dsim\GD12774-PA 3873 GD12774-PA 3505..3869 198..581 464 30.4 Plus
Dsim\GD10944-PA 468 GD10944-PA 55..389 174..514 410 31.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17404-PA 621 GJ17404-PA 1..621 1..597 2470 76.2 Plus
Dvir\GJ11251-PA 424 GJ11251-PA 56..420 198..581 473 31.4 Plus
Dvir\GJ21814-PA 465 GJ21814-PA 93..346 215..469 370 33.1 Plus
Dvir\GJ19743-PA 539 GJ19743-PA 95..508 164..597 365 27 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18137-PA 621 GK18137-PA 1..621 1..597 2666 81.3 Plus
Dwil\GK23603-PA 426 GK23603-PA 57..422 198..581 459 31.2 Plus
Dwil\GK21908-PA 467 GK21908-PA 85..388 203..514 407 32.4 Plus
Dwil\GK15724-PA 537 GK15724-PA 99..512 164..597 332 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21012-PA 599 GE21012-PA 1..599 1..597 3096 96.5 Plus
Dyak\GE20178-PA 417 GE20178-PA 49..413 198..581 456 30.6 Plus
Dyak\GE12518-PA 468 GE12518-PA 55..464 174..578 421 29.7 Plus
Dyak\Alas-PA 538 GE14349-PA 145..507 220..597 319 26.2 Plus

LD36009.hyp Sequence

Translation from 64 to 1857

> LD36009.hyp
MGNFDGDSGTVFEQSYATTNGNGKVPNGNGAADLSAPEKQELLRKFSAPA
YTEIRTRRCQPKPANDAQSPSSINYHPEKKSIPNGHASILDQESKPNQAE
GKLSPELEHFQKTSFEEVPLHTACLTYLGFYLLMILGYINQLLFVPKVAT
EKGRDGYVALYDAFESFYSRYVYRRIKDCWNRPICSVPGDELTLKDRVTD
DYGWSFKFTGTETRCLNLGSYNYLGFAAATGQCADDSEESARSSGLAYCS
SRCELGDNEQLQELEALTARYFGVEDAIVFGMGFATNALNLPSLLGPNSL
VISDEKNHASIILGLRLSGATTKVFKHNNMRDLERVLRQGVCYGNPKKGG
QPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEAHSVGAMGS
RGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHA
HCYAASISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLA
QLGVITYGHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAAVGAGFPATPIM
EGRIRFCLSAAHTKEQLDFALEAIDEIADDLGLKYSRKPRDPNPVIY*

LD36009.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
lace-PB 597 CG4162-PB 1..597 1..597 3124 100 Plus
lace-PA 597 CG4162-PA 1..597 1..597 3124 100 Plus
CG10361-PA 417 CG10361-PA 49..413 198..581 451 30.4 Plus
Spt-I-PC 468 CG4016-PC 96..467 215..581 408 29.6 Plus
Spt-I-PA 468 CG4016-PA 96..467 215..581 408 29.6 Plus