Clone LD36024 Report

Search the DGRC for LD36024

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:360
Well:24
Vector:pOT2
Associated Gene/TranscriptCG6398-RA
Protein status:LD36024.pep: gold
Preliminary Size:2129
Sequenced Size:1889

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6398 2001-01-01 Release 2 assignment
CG6398 2001-09-19 Blastp of sequenced clone
CG6398 2003-01-01 Sim4 clustering to Release 3
CG6398 2008-04-29 Release 5.5 accounting
CG6398 2008-08-15 Release 5.9 accounting
CG6398 2008-12-18 5.12 accounting

Clone Sequence Records

LD36024.complete Sequence

1889 bp (1889 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060411

> LD36024.complete
CGAACGTTGTTGCGATCACAACGTCTTGGCTATCAGTTCTCCGTCTCTTT
GCTGCCCAGATTCAGATTCTCAGTTCTCCGTTCTCAATTCTCCAGCTCAG
ATTCTTCGCCGGCGTGCGTGTGTGTGTGTGTAGTGTTGTGAGCGTGTGCA
GTGGAGCCCGTGTCAGTGTGTTAGTGCTGGCCCGTTGCTAAAATTATTAT
TTTTTTTAACGAACGTTGGCTTTTTTTTTGCTGTGCCTTCCAAACTGGTT
GCTGCTCTTTTAACTGTGTATTTGTGCAGCAGCAGTAGCAGTTCAAGAAG
AAGCGGCAGAATCTAGCTGCGGAAGAAGAAGACGTCGAAGACGCTAGAGA
TCACGAAACGAAAGAAAAATAATAGCAACTGTAGTTGTTGTTTTCTTCTC
GGGGATTTTCGTTGGATAAATCCCGTATCATAGCCCCAAAATAGCTGAGA
TTTCGAAACAGATCCGGAATAAAACACCAGCATGCCCTGCTCGGCCGTAA
CCCTATCTATAGCGACGATCTGCGCGATCATCGCCACCGCCCTGCTGGCG
ATCGCCTTCTCCACGGATAATTGGCTGCACTACGATGTCTGGCGCAACCA
GATACAGTCCTTTGCCGCCAAGCACTCGGATGCGGAGTCGTTGTTGCACA
ACATGAACGTGAAGTACTATTACTACACGAGGACACGAGGCTTGTTCCGG
ATCTGCTATCCCAAGGAGCGGCCGCCAGTTTCAGCGGTGCCCACCTATTT
GTCACCGATCGAGACACACTGCTCGAACATCGACTACTTCCCGCAGGCGG
AGGACGAGAAGATCGCCAACGAGGACGCCACATCGCGTCTCCATTTGGCC
CGCTCCTGCATCGCTCTGTTCATCATCAGCTTTGTGACCATCTTCTGTGC
GTTCTGGACCGGATTATCCGGCTGCTGGAAGCGGTCGTCGGGCGCCATCA
CAGCCACCTCGATACTGCTGCTAGTCACCTGTCTCCTGGCCGCCGGCGCC
ATGGGACTCTGGCACACCGTCGAGTTCTTTGAGAAGGAGAAGGTCGTGGG
CGAGGATTACTTCCAGCAGTGGAACACGGTCCTGCGCGACAACACGAAGA
TCGCCTACGACTGGTCGTACATCGTGGCCTGGGCAGGAATCGGAACCTGT
CTCCTGGCGTCCATTCTGCTCTCCGGCGCGGCCGTTTGCCTGCGCAACGA
GCGGGAGAAGGAGGAGCAGCTGAACCTGCAGTACCTGATGCCAGTTTACT
CGCAGAAGCAGCCACCCTATCCCCCTTATGCCAACTACGCCCAGCCGCAG
ATCTACCCAGGACCTTACTATCATGGCTCGCAGTACGGACCCTACAACTA
CTAGAGGCACACCCGAAGGGGCCAGCCAGCTTCAGCCAGCAGCTGCAATT
GAGTTATAGAGACATAGAGATCACAAATCATGACCAGGAGGGAACCTGGT
AGCCCTCCCCAGTAATCAAAATAGAGCAAGCGCTAACGAAATCTTAAAAC
GCATACATTCTGACAATGAAAATATTACTTAAAGCATCAATTTTTTTTTT
CGACAAGAATCTAGTTTGTAGTCTATATAGAGCTATATAGTATATATATA
TATGCTTGTATGTATAACTGATCGTGGGACTTGAGTCAAAGTTGCGTCCA
AGTTTTTGGTGCGCGAATTGTTTGCGCGTTATTTTGCAAATATCTAAGAG
AGACGAATGGATGGATGGTTTTATATGTTGACCACGGCGAGATGGCGATT
TAAAGACGGAACAATAAAGAGTTAATTTATTGTAGCACGTAACGTACATG
TAGCGTATCTAAAATAATAATAAAGAAATATGTGTATGTATCTAAGCTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD36024.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-RA 2115 CG6398-RA 100..1951 1..1852 9260 100 Plus
CG6398.b 1752 CG6398.b 180..1752 280..1852 7865 100 Plus
CG6398.a 1749 CG6398.a 180..1749 283..1852 7850 100 Plus
CG6398.b 1752 CG6398.b 11..179 1..169 845 100 Plus
CG6398.a 1749 CG6398.a 11..179 1..169 845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17720158..17720764 1..607 3035 100 Plus
chrX 22417052 chrX 17730333..17730940 1241..1848 3010 99.7 Plus
chrX 22417052 chrX 17729701..17730044 737..1080 1720 100 Plus
chrX 22417052 chrX 17730108..17730274 1078..1244 805 98.8 Plus
chrX 22417052 chrX 17729504..17729636 605..737 665 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17840986..17841597 1241..1852 3060 100 Plus
X 23542271 X 17830840..17831446 1..607 3035 100 Plus
X 23542271 X 17840354..17840697 737..1080 1720 100 Plus
X 23542271 X 17840761..17840927 1078..1244 835 100 Plus
X 23542271 X 17840157..17840289 605..737 665 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17849084..17849695 1241..1852 3060 100 Plus
X 23527363 X 17838938..17839544 1..607 3035 100 Plus
X 23527363 X 17848452..17848795 737..1080 1720 100 Plus
X 23527363 X 17848859..17849025 1078..1244 835 100 Plus
X 23527363 X 17848255..17848387 605..737 665 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:52:22 has no hits.

LD36024.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:53:27 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17729507..17729636 608..737 100 -> Plus
chrX 17729702..17730042 738..1078 100 -> Plus
chrX 17730109..17730274 1079..1244 98 -> Plus
chrX 17720158..17720764 1..607 96 -> Plus
chrX 17730337..17730940 1245..1848 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:06:45 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..873 482..1354 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:32 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..873 482..1354 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:28 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..873 482..1354 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:56 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..873 482..1354 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:04 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..873 482..1354 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:06:45 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..1848 1..1848 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:32 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..1848 1..1848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:28 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 13..1860 1..1848 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:57 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 1..1848 1..1848 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:04 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
CG6398-RA 13..1860 1..1848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:27 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
X 17830840..17831446 1..607 100 -> Plus
X 17840160..17840289 608..737 100 -> Plus
X 17840355..17840695 738..1078 100 -> Plus
X 17840762..17840927 1079..1244 100 -> Plus
X 17840990..17841593 1245..1848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:27 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
X 17830840..17831446 1..607 100 -> Plus
X 17840160..17840289 608..737 100 -> Plus
X 17840355..17840695 738..1078 100 -> Plus
X 17840762..17840927 1079..1244 100 -> Plus
X 17840990..17841593 1245..1848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:27 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
X 17830840..17831446 1..607 100 -> Plus
X 17840160..17840289 608..737 100 -> Plus
X 17840355..17840695 738..1078 100 -> Plus
X 17840762..17840927 1079..1244 100 -> Plus
X 17840990..17841593 1245..1848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:28 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17724873..17725479 1..607 100 -> Plus
arm_X 17734193..17734322 608..737 100 -> Plus
arm_X 17734388..17734728 738..1078 100 -> Plus
arm_X 17734795..17734960 1079..1244 100 -> Plus
arm_X 17735023..17735626 1245..1848 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:26 Download gff for LD36024.complete
Subject Subject Range Query Range Percent Splice Strand
X 17848258..17848387 608..737 100 -> Plus
X 17848453..17848793 738..1078 100 -> Plus
X 17848860..17849025 1079..1244 100 -> Plus
X 17838938..17839544 1..607 100 -> Plus
X 17849088..17849691 1245..1848 100   Plus

LD36024.hyp Sequence

Translation from 481 to 1353

> LD36024.hyp
MPCSAVTLSIATICAIIATALLAIAFSTDNWLHYDVWRNQIQSFAAKHSD
AESLLHNMNVKYYYYTRTRGLFRICYPKERPPVSAVPTYLSPIETHCSNI
DYFPQAEDEKIANEDATSRLHLARSCIALFIISFVTIFCAFWTGLSGCWK
RSSGAITATSILLLVTCLLAAGAMGLWHTVEFFEKEKVVGEDYFQQWNTV
LRDNTKIAYDWSYIVAWAGIGTCLLASILLSGAAVCLRNEREKEEQLNLQ
YLMPVYSQKQPPYPPYANYAQPQIYPGPYYHGSQYGPYNY*

LD36024.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-PB 290 CG6398-PB 1..290 1..290 1567 100 Plus
CG6398-PA 290 CG6398-PA 1..290 1..290 1567 100 Plus

LD36024.pep Sequence

Translation from 481 to 1353

> LD36024.pep
MPCSAVTLSIATICAIIATALLAIAFSTDNWLHYDVWRNQIQSFAAKHSD
AESLLHNMNVKYYYYTRTRGLFRICYPKERPPVSAVPTYLSPIETHCSNI
DYFPQAEDEKIANEDATSRLHLARSCIALFIISFVTIFCAFWTGLSGCWK
RSSGAITATSILLLVTCLLAAGAMGLWHTVEFFEKEKVVGEDYFQQWNTV
LRDNTKIAYDWSYIVAWAGIGTCLLASILLSGAAVCLRNEREKEEQLNLQ
YLMPVYSQKQPPYPPYANYAQPQIYPGPYYHGSQYGPYNY*

LD36024.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21105-PA 290 GF21105-PA 1..290 1..290 1544 98.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19132-PA 290 GG19132-PA 1..290 1..290 1553 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17940-PA 290 GH17940-PA 1..290 1..290 1512 95.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6398-PB 290 CG6398-PB 1..290 1..290 1567 100 Plus
CG6398-PA 290 CG6398-PA 1..290 1..290 1567 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15410-PA 290 GI15410-PA 1..290 1..290 1507 95.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14750-PA 290 GL14750-PA 1..290 1..290 1535 97.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19563-PA 290 GA19563-PA 1..290 1..290 1535 97.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22856-PA 132 GM22856-PA 11..132 158..290 476 73.7 Plus
Dsec\GM22856-PA 132 GM22856-PA 1..42 1..42 217 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17365-PA 133 GD17365-PA 11..133 158..290 494 74.4 Plus
Dsim\GD17365-PA 133 GD17365-PA 1..42 1..42 217 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16369-PA 290 GJ16369-PA 1..290 1..290 1514 96.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25324-PA 290 GK25324-PA 1..290 1..290 1521 96.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17688-PA 290 GE17688-PA 1..290 1..290 1560 100 Plus