Clone LD36057 Report

Search the DGRC for LD36057

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:360
Well:57
Vector:pOT2
Associated Gene/Transcriptcas-RA
Protein status:LD36057.pep: gold
Preliminary Size:3275
Sequenced Size:3151

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2102 2001-07-04 Blastp of sequenced clone
CG2102 2003-01-01 Sim4 clustering to Release 3
cas 2008-04-29 Release 5.5 accounting
cas 2008-08-15 Release 5.9 accounting
cas 2008-12-18 5.12 accounting

Clone Sequence Records

LD36057.complete Sequence

3151 bp (3151 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051865

> LD36057.complete
CGAACTTTGAGGATCGCTGAGACGAGACGCCGTGCAAGAAAGTCGATCCA
AAATCCGAAATTCGAAATCCGTGCTGTGATCTGTGCTGAATATAGTGAAG
AAATCTTAAAGAATTTTCAAAAAGAAATCCCAGTGCTGTGCTGAATATAT
CCGCGAAAGTGTGCCACAAAAATGTCCAACCAAATGGAGTTTATTATGCA
ACTCTACATGATGAACTTGATGAAGCAGCAGCAGCAAATGCAGCTCCAGC
TTCCGCAGCAGCAACAGCAGCAGCAGCTGGCTGGATACACTTACACACAG
AACGAGGATATCTCTAGCAGCACATCCGTGCAGCAGCAACAGCAGCAGCA
GCAGGAGCAACTGCAGCAGCCACAGCCAGATCTCCGCAAGACAAGAACGC
ACAAGCGCATTAGCTCGCAAAACACCAACTGTAGTAGTAGCCGTAGTTGT
AGTCCCAATAGTAATTTGATTGCTTTTCAACCACAACAATACCCAGGCGC
TACAGCGGCAACTCCTTCCACTCCCAACAGCCACCCCAGCAACCTGGTCA
ACCAGATGCTGCTCCAAAGCCTGCCGCCGCTGACGCAGCTCATGTTGCAG
CAGCAGCAGCAGCAACATTTGCTGACCACCTCCAACCTTCTACTAACACC
CACCCACACCCCCAGTTCGCTGGGCAAGCAGGATCCACTGCAGCATCCGT
TGTTGCTGGGCCAGTTTGCCGGCTCCGAACAGATGGCCACAAATAACTTC
CTTCAATCATCCACAGTGACCTCCACGCCCATCGAGAGAGAGAAGGCAGC
CACACCAGCACCCTCCGCCGGAGCAACTGCCGGCAACCTTTCGGCGGCCC
AGGTCAAGTTTGAGCAGGAGTCCGCCGACGACGATGAGGACGATGATAAG
CCGCTGTCCAGCCTCACCAGCTGCAGCTCCTCGGGCCACACCAACGCCAG
CTCCGAGAAGCTGCTGTTGTCGGGCGTCCATCCGCTGGAGTCAACCACCG
ACAGCCTAGACTCACCCAGCATGTATACGCCCGTCAAGCAGCCGGCGGAC
TCATCGTACGGACTCATCACACCCGTCGACAGTGATCTGACCCCCAACAC
ACCCCTCCAACCGACCCAAACAATATCCCTGCTGACGCCGCCGTCGAGTG
AGCAGAGCAAGAGCCTGGTGAGCCTCTCGGCGGCCAGCGGCCTGGATGCT
CTGCTCCAGAACGAGGAGGTACTGAAGAACCTGCGGAAAGTGTCCTCCTA
CCTGGAGTGCGAGAACAGCCTGTGCAGGCAGGAGAACCTGCGGGAGCACT
TCCATTGCCACGAGGAGCCCTGCCAGGGCAAGATCCTGAGCAAGAAGGAC
GACATCATCCGGCACCTGAAGTGGCACAAGAAGCGCAAGGAAAGCCTCAA
GCTGGGCTTTGCCCGCTTCTCCTCCTCGGACGACTGTGCACCAGCCTACG
GAGAGGGTTGCGCCTACAACTGGAAACAGACCCACTACCACTGCGTCTAC
GAGCACTGTCCCAAGGTGTATGTGAGCACCAGTGACGTCCAGATGCATGC
CAATTTCCACCGCAAGGACTCCGAGATCGTGAACGAGGGCTTCCGGCGCT
TCCGGGCGCACGAGACCTGCCGCATCGAGGATTGCCCCTTTTTCGGCAAG
AAGATCTCCCACTACCACTGCTGTCGCGAGGGATGCACCCACACCTTCAA
GAACAAGGCCGATATGGACAAGCACAAAACTTACCATCTGAAGGACCACC
AGCTGAAGATGGACGGCTTCAAGAAGATCCTGAAGACCGAGGTATGTCCC
TTCGACGCCTGCAAGTTCTCCACCGTCTGCAACCACATCCACTGCGTCCG
CGAGGGCTGCGACTACATCCTGCACTCCAGCAGCCAGATGATCAGCCACA
AGAGAAAGCACGATCGTCAGGACGGAGAGCAGGCGTACCAGCAGTTTAAG
ATCAAGCAGGACGTGGAGGAGTCCTCCCTGGATGCCATGCCCCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCCCACCAGCCTTAGTCAATCCCAGAGCA
GCAGCTCTGTATGCGGCGGCAGCAACACCTCCACTCCACTCTCCTCTTTG
TCCGCCGAGCACTTCCTGGCTCGGAAACGCGGCAGGCCACCCAAGAAAAT
CCAACTGCCAGCCGACGCTCAGCAGTCGGAAGCCAAGCGCCTGAAAGTCG
AAGACGAGTCCTCTAATCCCGCCATGCTCCTGCCCCAGTCCCAGCCAGCA
GCCGCTGTGCATCCGCTGACAAGTGGACTCTTTCCCGGTCTCCTGCCCGC
TGCCGCCGCTCCTGGAGTGGATCCCACAGCCCCTAACTTCCAGCTCACCC
ACCTGATGGCCCTCTTCCAGTTGCAGAATCCCCTCTTCTACCAGAACCTC
TATCCGGGAATGACCCAGAATTCCTCCATGCTCGGCAACCTGGCAGCACT
TAGCGCCGCATCGGCAGCAGCGGCGGCGGCAGCGGCGGCAAATGGAGCCG
GAGTCCAGCAGCCGAAGGCAGAGTTTAGCTTTAAGCCAGAGTTTAAGGAG
TAGGAAGGATGCGTGTCCTTAGGGTATTTTGCCAGCTACTTAGTTTGACC
GACGGACGTTGGACATTGTACATACGCGCTTTAAGCAGGTTTAGGTGGGT
TTTTTTGTGGGTTCAGGCAGATCCAGGACAAGGCATCCTTCCCTCCACAA
AAACCAACTCAGCCACACTTTGAGAACCTAGAAGTCCCCTATACAAAGTG
TAGCTGAATTGGCTTTTGCCAAACATTTTCCCCTTTAGCTTAGATTCTCT
CAGTGCCACATTAATTTTTAAAATTTTCAGCCATTTTAAATAAAAAGGAA
GAACTTTCTGAATTTAAGTTTGACTAAACTGTGATGTTTTCATTAGAGTA
GCCTCTTTTAATTGATAGAGCGAGTGCAGGCTATGCAGGATATGCAGGAC
TTAGGAGACTTGGATTGTCAATAACATAGCGTCTAAGCATTACATTGTAT
GTGATATACTAATAAATAATGGCTAATTGTTTTTGCTTTATAATTTAAGG
GAATAATATTATAATTCTAATTATAAACTTTAGTAAAATCAGCATTCTTC
TATAATAAATAAGTCAACATTACCTGAATAAAAAAAAAAAAAAAAAAAAA
A

LD36057.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
castor-RA 3684 castor-RA 518..3649 1..3132 15660 100 Plus
castor.a 3373 castor.a 978..3343 767..3132 11830 100 Plus
castor.a 3373 castor.a 518..977 1..460 2300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1541409..1542431 1023..1 5115 100 Minus
chr3R 27901430 chr3R 1538623..1539600 3129..2152 4890 100 Minus
chr3R 27901430 chr3R 1540176..1540870 1717..1023 3475 100 Minus
chr3R 27901430 chr3R 1539672..1540106 2151..1717 2175 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5715761..5716783 1023..1 5115 100 Minus
3R 32079331 3R 5712972..5713952 3132..2152 4905 100 Minus
3R 32079331 3R 5714528..5715222 1717..1023 3475 100 Minus
3R 32079331 3R 5714024..5714458 2151..1717 2175 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5456592..5457614 1023..1 5115 100 Minus
3R 31820162 3R 5453803..5454783 3132..2152 4905 100 Minus
3R 31820162 3R 5455359..5456053 1717..1023 3475 100 Minus
3R 31820162 3R 5454855..5455289 2151..1717 2175 100 Minus
Blast to na_te.dros performed 2019-03-16 10:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6863 1993..2079 195 73.9 Plus

LD36057.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:57:34 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1538623..1539600 2152..3129 97 <- Minus
chr3R 1539672..1540105 1718..2151 92 <- Minus
chr3R 1540176..1540869 1024..1717 100 <- Minus
chr3R 1541409..1542154 278..1023 94 == Minus
chr3R 1542209..1542431 1..223 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:26 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 1..2382 172..2553 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:02 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 1..2382 172..2553 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:36:44 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 1..2382 172..2553 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:34 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 1..2382 172..2553 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:27 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 1..2382 172..2553 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:13:04 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 518..3646 1..3129 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:02 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 518..3646 1..3129 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:36:44 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 23..3151 1..3129 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:36 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 518..3646 1..3129 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:27 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
cas-RA 23..3151 1..3129 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:34 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5712975..5713952 2152..3129 100 <- Minus
3R 5714024..5714457 1718..2151 100 <- Minus
3R 5714528..5715221 1024..1717 100 <- Minus
3R 5715761..5716783 1..1023 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:34 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5712975..5713952 2152..3129 100 <- Minus
3R 5714024..5714457 1718..2151 100 <- Minus
3R 5714528..5715221 1024..1717 100 <- Minus
3R 5715761..5716783 1..1023 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:34 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5712975..5713952 2152..3129 100 <- Minus
3R 5714024..5714457 1718..2151 100 <- Minus
3R 5714528..5715221 1024..1717 100 <- Minus
3R 5715761..5716783 1..1023 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:36:44 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1538697..1539674 2152..3129 100 <- Minus
arm_3R 1539746..1540179 1718..2151 100 <- Minus
arm_3R 1540250..1540943 1024..1717 100 <- Minus
arm_3R 1541483..1542505 1..1023 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:47 Download gff for LD36057.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5453806..5454783 2152..3129 100 <- Minus
3R 5454855..5455288 1718..2151 100 <- Minus
3R 5455359..5456052 1024..1717 100 <- Minus
3R 5456592..5457614 1..1023 100   Minus

LD36057.pep Sequence

Translation from 171 to 2552

> LD36057.pep
MSNQMEFIMQLYMMNLMKQQQQMQLQLPQQQQQQQLAGYTYTQNEDISSS
TSVQQQQQQQQEQLQQPQPDLRKTRTHKRISSQNTNCSSSRSCSPNSNLI
AFQPQQYPGATAATPSTPNSHPSNLVNQMLLQSLPPLTQLMLQQQQQQHL
LTTSNLLLTPTHTPSSLGKQDPLQHPLLLGQFAGSEQMATNNFLQSSTVT
STPIEREKAATPAPSAGATAGNLSAAQVKFEQESADDDEDDDKPLSSLTS
CSSSGHTNASSEKLLLSGVHPLESTTDSLDSPSMYTPVKQPADSSYGLIT
PVDSDLTPNTPLQPTQTISLLTPPSSEQSKSLVSLSAASGLDALLQNEEV
LKNLRKVSSYLECENSLCRQENLREHFHCHEEPCQGKILSKKDDIIRHLK
WHKKRKESLKLGFARFSSSDDCAPAYGEGCAYNWKQTHYHCVYEHCPKVY
VSTSDVQMHANFHRKDSEIVNEGFRRFRAHETCRIEDCPFFGKKISHYHC
CREGCTHTFKNKADMDKHKTYHLKDHQLKMDGFKKILKTEVCPFDACKFS
TVCNHIHCVREGCDYILHSSSQMISHKRKHDRQDGEQAYQQFKIKQDVEE
SSLDAMPQQQQQQQQQQPTSLSQSQSSSSVCGGSNTSTPLSSLSAEHFLA
RKRGRPPKKIQLPADAQQSEAKRLKVEDESSNPAMLLPQSQPAAAVHPLT
SGLFPGLLPAAAAPGVDPTAPNFQLTHLMALFQLQNPLFYQNLYPGMTQN
SSMLGNLAALSAASAAAAAAAAANGAGVQQPKAEFSFKPEFKE*

LD36057.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18652-PA 803 GF18652-PA 1..803 1..793 2597 74.9 Plus
Dana\GF25271-PA 523 GF25271-PA 324..511 403..579 206 26.4 Plus
Dana\GF25271-PA 523 GF25271-PA 333..460 473..584 156 27.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10881-PA 841 GG10881-PA 1..841 1..793 3115 83.9 Plus
Dere\GG15511-PA 549 GG15511-PA 344..537 403..579 203 25.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18116-PA 772 GH18116-PA 1..772 1..793 2090 64.6 Plus
Dgri\GH18114-PA 797 GH18114-PA 1..797 1..793 2004 60.3 Plus
Dgri\GH16656-PA 571 GH16656-PA 356..534 403..579 231 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
cas-PA 793 CG2102-PA 1..793 1..793 4153 100 Plus
cas-PC 691 CG2102-PC 1..691 1..793 3182 81.1 Plus
CG7512-PB 540 CG7512-PB 335..528 403..579 203 25.1 Plus
Spps-PA 968 CG5669-PA 375..824 13..465 177 22.6 Plus
Spps-PB 985 CG5669-PB 375..824 13..465 177 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23829-PA 789 GI23829-PA 1..789 1..793 2152 63.9 Plus
Dmoj\GI11615-PA 595 GI11615-PA 383..569 403..579 212 25.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23017-PA 831 GL23017-PA 1..831 1..793 2680 74.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15242-PA 823 GA15242-PA 1..823 1..793 2684 75.1 Plus
Dpse\GA23877-PA 581 GA23877-PA 364..556 403..579 198 24.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10598-PA 788 GM10598-PA 1..788 1..793 4080 97.1 Plus
Dsec\GM25280-PA 542 GM25280-PA 337..530 403..579 208 25.6 Plus
Dsec\GM25280-PA 542 GM25280-PA 343..479 470..584 160 25.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19588-PA 783 GD19588-PA 1..783 1..793 3991 96.1 Plus
Dsim\GD17635-PA 477 GD17635-PA 272..465 403..579 203 25.1 Plus
Dsim\GD17635-PA 477 GD17635-PA 274..414 465..584 164 26.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23287-PA 832 GJ23287-PA 1..832 1..793 2202 64.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14078-PA 803 GK14078-PA 1..803 1..793 2394 68.2 Plus
Dwil\GK17023-PA 582 GK17023-PA 346..530 403..579 208 26.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24144-PA 791 GE24144-PA 1..791 1..793 3222 90.9 Plus
Dyak\GE21821-PA 542 GE21821-PA 337..530 403..579 196 25.1 Plus

LD36057.hyp Sequence

Translation from 171 to 2552

> LD36057.hyp
MSNQMEFIMQLYMMNLMKQQQQMQLQLPQQQQQQQLAGYTYTQNEDISSS
TSVQQQQQQQQEQLQQPQPDLRKTRTHKRISSQNTNCSSSRSCSPNSNLI
AFQPQQYPGATAATPSTPNSHPSNLVNQMLLQSLPPLTQLMLQQQQQQHL
LTTSNLLLTPTHTPSSLGKQDPLQHPLLLGQFAGSEQMATNNFLQSSTVT
STPIEREKAATPAPSAGATAGNLSAAQVKFEQESADDDEDDDKPLSSLTS
CSSSGHTNASSEKLLLSGVHPLESTTDSLDSPSMYTPVKQPADSSYGLIT
PVDSDLTPNTPLQPTQTISLLTPPSSEQSKSLVSLSAASGLDALLQNEEV
LKNLRKVSSYLECENSLCRQENLREHFHCHEEPCQGKILSKKDDIIRHLK
WHKKRKESLKLGFARFSSSDDCAPAYGEGCAYNWKQTHYHCVYEHCPKVY
VSTSDVQMHANFHRKDSEIVNEGFRRFRAHETCRIEDCPFFGKKISHYHC
CREGCTHTFKNKADMDKHKTYHLKDHQLKMDGFKKILKTEVCPFDACKFS
TVCNHIHCVREGCDYILHSSSQMISHKRKHDRQDGEQAYQQFKIKQDVEE
SSLDAMPQQQQQQQQQQPTSLSQSQSSSSVCGGSNTSTPLSSLSAEHFLA
RKRGRPPKKIQLPADAQQSEAKRLKVEDESSNPAMLLPQSQPAAAVHPLT
SGLFPGLLPAAAAPGVDPTAPNFQLTHLMALFQLQNPLFYQNLYPGMTQN
SSMLGNLAALSAASAAAAAAAAANGAGVQQPKAEFSFKPEFKE*

LD36057.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
cas-PA 793 CG2102-PA 1..793 1..793 4153 100 Plus
cas-PC 691 CG2102-PC 1..691 1..793 3182 81.1 Plus
CG7512-PB 540 CG7512-PB 335..528 403..579 203 25.1 Plus
Spps-PA 968 CG5669-PA 375..824 13..465 177 22.6 Plus
Spps-PB 985 CG5669-PB 375..824 13..465 177 22.6 Plus