Clone LD36080 Report

Search the DGRC for LD36080

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:360
Well:80
Vector:pOT2
Associated Gene/Transcriptras-RB
Protein status:LD36080.pep: wuzgold
Preliminary Size:2504
Sequenced Size:2520

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1799 2001-10-10 Blastp of sequenced clone
CG1799 2003-01-01 Sim4 clustering to Release 3
ras 2008-04-29 Release 5.5 accounting
ras 2008-08-15 Release 5.9 accounting
ras 2008-12-18 5.12 accounting

Clone Sequence Records

LD36080.complete Sequence

2520 bp (2520 high quality bases) assembled on 2001-10-10

GenBank Submission: AY089553

> LD36080.complete
CCGGTTGGCCGACGGGCGAGGTGGTGCGGGGGCGGATTACGTGAGAGCGA
AGGCGGAACGACAGCAACAACAACAGCACTGGTGATGTCGATGATGAAGT
AGTGGGTGGAGGAGGCGATAAATCTAAATCTCTGCCCAGCTCGAGAGGAA
TCTGTATCCATAAAAAGAAATCTGCAACAGGAGAAGATCCCAAAACAGGC
GGTTTTTATCTCTATACGGCTTGTTATTGTCAGCTCCCCGTTGTTTGTTG
ACTGTTTGTTTGGGTTGAACGCACGCGGAAAATGGAGAGCACGACAAAGG
TGAAGGTGAACGGCTTTGTGGAATCGACGTCGTCTTCAGCGGCGCCGGCA
ATCCAGACAAAGAGTACCACCGGATTCGATGCCGAGCTGCAGGATGGGCT
GAGTTGTAAGGAACTGTTCCAGAACGCGACTTTCTCATACTGCCCGGCTA
CATAGACTTCACCGCCGAGGAGGTCGATCTCAGTTCGCCACTGACCAAGT
CGCTGACATTGCGAGCACCGCTGGTTAGTTCGCCCATGGACACGGTAACC
GAATCGGAGATGGCCATCGCCATGGCGCTGTGTGGTGGCATTGGCATCAT
CCATCACAACTGCACGCCGGAATACCAGGCGTTGGAGGTGCACAAGGTTA
AGAAGTACAAGCACGGCTTCATGCGCGACCCCTCGGTGATGTCGCCCACG
AATACGGTGGGGGATGTGTTGGAGGCGCGGCGGAAGAACGGATTCACCGG
CTATCCGGTCACCGAGAACGGCAAACTTGGCGGCAAGCTGCTGGGCATGG
TCACGTCGCGAGACATTGACTTCCGCGAGAACCAGCCGGAGGTCCTGCTG
GCCGACATCATGACCACCGAACTGGTCACCGCTCCCAATGGCATCAATCT
GCCCACGGCAAACGCTATTCTCGAGAAGAGCAAGAAGGGCAAACTGCCGA
TTGTGAATCAGGCCGGCGAACTGGTGGCCATGATTGCCCGCACGGATTTG
AAGAAGGCCCGCTCCTACCCGAATGCCTCCAAGGACTCCAATAAGCAGCT
CCTCGTCGGCGCTGCCATCGGAACGCGATCGGAGGACAAGGCGCGCCTGG
CTCTGCTGGTGGCCAACGGCGTGGACGTTATCATCCTTGATTCATCGCAG
GGCAACTCCGTCTACCAGGTGGAGATGATCAAGTACATTAAGGAGACCTA
TCCCGAACTACAGGTCATTGGTGGCAATGTGGTAACACGTGCCCAGGCCA
AAAATCTCATTGATGCCGGCGTCGATGGACTGCGTGTGGGCATGGGTTCC
GGTTCCATCTGCATCACCCAGGAGGTGATGGCCTGCGGATGTCCTCAGGC
CACTGCTGTCTACCAGGTGTCCACGTACGCTCGCCAATTCGGAGTGCCAG
TGATCGCGGACGGAGGCATCCAGTCCATTGGACACATTGTGAAGGCTATT
GCATTGGGAGCCAGCGCTGTAATGATGGGCTCCCTGCTGGCGGGCACATC
GGAGGCACCGGGCGAGTACTTCTTCTCCGACGGAGTGCGCCTTAAGAAGT
ACCGCGGCATGGGCTCCCTGGAGGCCATGGAGCGCGGCGATGCCAAGGGC
GCTGCCATGTCGCGCTACTACCACAACGAGATGGATAAAATGAAGGTGGC
ACAGGGCGTCAGTGGCAGCATCGTGGACAAGGGCAGTGTGCTGCGCTATC
TACCCTATTTGGAGTGCGGACTGCAGCACAGTTGTCAGGACATCGGTGCT
AACTCCATTAATAAATTGAGGGATATGATCTATAATGGCCAACTGCGCTT
CATGAAGCGCACCCATTCCGCTCAACTGGAAGGCAATGTCCATGGCCTCT
TCAGCTACGAGAAGCGTCTCTTCTAACATACGACGATGGCTGCGACGGAA
ACGGGCAGTGGAGGAGTGCCTGCCCCTGTCCAGCAGCAGCAGCAGCAGCA
GCAACACCATCAGCAGCAACAGCATCGCCACCGATCTGCAGCAGGCCCAC
TGCTCGACTACACCCGCCTATTCGATCGCAAGTGAGAGAAGAAAAGAGAA
TCGAGCGCTCGAATAGCGCATCCTTTTCCCCTGGATTTTTTCCAATGTTA
GGTTAAGTTTAATCGGAATCGCTGACGTTAAAGATTACGATTCCAATGTA
GATTCCCCTTTTTGATGGCGGTGGAGGTTACCTCGAATCGCCCGAATACA
TGTGTATACTTAATCCATCTGTCTGGTAGACAGAATCCTAATTATAAGTG
TTTGCAGGTTACTTGATCTGTATAGAAAGTATATAATCTTCAACTATTCG
CTATATATATCTAAAGCGCAACGCGTTGGTTGGCCGCTTACTTATTTTGC
ACGCTATATGTATATAGATGTTAATCTCTATTTGTATAGTGTTGGATGTT
TACTATTATACCGAAGCTAGCTTCAAGTTTTAAAACTCTGCCAAACTTAT
TAAATGTGAACTGAAACTAACTGAAAAGTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LD36080.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
ras-RB 2496 ras-RB 18..2496 1..2479 12395 100 Plus
ras-RA 3381 ras-RA 1174..3227 427..2480 10270 100 Plus
ras-RC 3141 ras-RC 1080..3133 427..2480 10270 100 Plus
ras-RA 3381 ras-RA 867..1154 139..426 1440 100 Plus
ras-RC 3141 ras-RC 867..1060 233..426 970 100 Plus
ras-RA 3381 ras-RA 18..156 1..139 695 100 Plus
ras-RC 3141 ras-RC 18..156 1..139 695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10639463..10640179 1769..2479 3430 98.9 Plus
chrX 22417052 chrX 10637787..10638439 577..1229 3265 100 Plus
chrX 22417052 chrX 10638852..10639394 1229..1771 2715 100 Plus
chrX 22417052 chrX 10637043..10637331 138..426 1430 99.7 Plus
chrX 22417052 chrX 10637442..10637593 426..577 760 100 Plus
chrX 22417052 chrX 10635890..10636028 1..139 695 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10748096..10748807 1769..2480 3560 100 Plus
X 23542271 X 10746420..10747072 577..1229 3265 100 Plus
X 23542271 X 10747485..10748027 1229..1771 2715 100 Plus
X 23542271 X 10745676..10745964 138..426 1445 100 Plus
X 23542271 X 10746075..10746226 426..577 760 100 Plus
X 23542271 X 10744523..10744661 1..139 695 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10756194..10756905 1769..2480 3560 100 Plus
X 23527363 X 10754518..10755170 577..1229 3265 100 Plus
X 23527363 X 10755583..10756125 1229..1771 2715 100 Plus
X 23527363 X 10753774..10754062 138..426 1445 100 Plus
X 23527363 X 10754173..10754324 426..577 760 100 Plus
X 23527363 X 10752621..10752759 1..139 695 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:37:39 has no hits.

LD36080.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:38:35 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10635890..10636028 1..139 100 -> Plus
chrX 10637045..10637331 140..426 99 -> Plus
chrX 10637443..10637593 427..577 100 -> Plus
chrX 10637788..10638439 578..1229 100 -> Plus
chrX 10638853..10639393 1230..1770 100 -> Plus
chrX 10639465..10640179 1771..2479 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:27 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 1..145 282..426 100 -> Plus
ras-RA 165..1614 427..1876 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:55 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 165..1614 427..1876 100   Plus
ras-RA 1..145 282..426 100 -> Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:59 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RC 1..145 282..426 100 -> Plus
ras-RC 165..1614 427..1876 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:56 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 1..145 282..426 100 -> Plus
ras-RA 165..1614 427..1876 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:17 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 1..145 282..426 100 -> Plus
ras-RA 165..1614 427..1876 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:16 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RB 18..2496 1..2479 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:55 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RB 18..2496 1..2479 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:59 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 22..447 1..426 100 -> Plus
ras-RA 467..2519 427..2479 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:57 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RB 18..2496 1..2479 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:17 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 22..447 1..426 100 -> Plus
ras-RA 467..2519 427..2479 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:35 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
X 10744523..10744661 1..139 100 -> Plus
X 10745678..10745964 140..426 100 -> Plus
X 10746076..10746226 427..577 100 -> Plus
X 10746421..10747072 578..1229 100 -> Plus
X 10747486..10748026 1230..1770 100 -> Plus
X 10748098..10748806 1771..2479 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:35 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
X 10744523..10744661 1..139 100 -> Plus
X 10745678..10745964 140..426 100 -> Plus
X 10746076..10746226 427..577 100 -> Plus
X 10746421..10747072 578..1229 100 -> Plus
X 10747486..10748026 1230..1770 100 -> Plus
X 10748098..10748806 1771..2479 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:35 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
X 10744523..10744661 1..139 100 -> Plus
X 10745678..10745964 140..426 100 -> Plus
X 10746076..10746226 427..577 100 -> Plus
X 10746421..10747072 578..1229 100 -> Plus
X 10747486..10748026 1230..1770 100 -> Plus
X 10748098..10748806 1771..2479 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:59 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10638556..10638694 1..139 100 -> Plus
arm_X 10639711..10639997 140..426 100 -> Plus
arm_X 10640109..10640259 427..577 100 -> Plus
arm_X 10640454..10641105 578..1229 100 -> Plus
arm_X 10641519..10642059 1230..1770 100 -> Plus
arm_X 10642131..10642839 1771..2479 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:00:04 Download gff for LD36080.complete
Subject Subject Range Query Range Percent Splice Strand
X 10754174..10754324 427..577 100 -> Plus
X 10753776..10754062 140..426 100 -> Plus
X 10754519..10755170 578..1229 100 -> Plus
X 10755584..10756124 1230..1770 100 -> Plus
X 10756196..10756904 1771..2479 100   Plus
X 10752621..10752759 1..139 100 -> Plus

LD36080.hyp Sequence

Translation from 535 to 1875

> LD36080.hyp
MDTVTESEMAIAMALCGGIGIIHHNCTPEYQALEVHKVKKYKHGFMRDPS
VMSPTNTVGDVLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQ
PEVLLADIMTTELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMI
ARTDLKKARSYPNASKDSNKQLLVGAAIGTRSEDKARLALLVANGVDVII
LDSSQGNSVYQVEMIKYIKETYPELQVIGGNVVTRAQAKNLIDAGVDGLR
VGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGH
IVKAIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMER
GDAKGAAMSRYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSC
QDIGANSINKLRDMIYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLF*

LD36080.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
ras-PD 537 CG1799-PD 92..537 1..446 2273 100 Plus
ras-PE 537 CG1799-PE 92..537 1..446 2273 100 Plus
ras-PA 537 CG1799-PA 92..537 1..446 2273 100 Plus
ras-PC 537 CG1799-PC 92..537 1..446 2273 100 Plus

LD36080.pep Sequence

Translation from 535 to 1875

> LD36080.pep
MDTVTESEMAIAMALCGGIGIIHHNCTPEYQALEVHKVKKYKHGFMRDPS
VMSPTNTVGDVLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQ
PEVLLADIMTTELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMI
ARTDLKKARSYPNASKDSNKQLLVGAAIGTRSEDKARLALLVANGVDVII
LDSSQGNSVYQVEMIKYIKETYPELQVIGGNVVTRAQAKNLIDAGVDGLR
VGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGH
IVKAIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMER
GDAKGAAMSRYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSC
QDIGANSINKLRDMIYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLF*

LD36080.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21436-PA 540 GF21436-PA 95..540 1..446 2345 98 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18365-PA 535 GG18365-PA 90..535 1..446 2360 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12599-PA 543 GH12599-PA 98..543 1..446 2284 95.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
ras-PD 537 CG1799-PD 92..537 1..446 2273 100 Plus
ras-PE 537 CG1799-PE 92..537 1..446 2273 100 Plus
ras-PA 537 CG1799-PA 92..537 1..446 2273 100 Plus
ras-PC 537 CG1799-PC 92..537 1..446 2273 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15433-PA 235 GI15433-PA 1..231 1..231 1170 94.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26729-PA 513 GL26729-PA 81..513 1..446 2214 93 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14756-PA 526 GA14756-PA 81..526 1..446 2308 96.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11429-PA 536 GM11429-PA 91..536 1..446 2377 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16985-PA 527 GD16985-PA 90..527 1..446 2276 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14720-PA 556 GJ14720-PA 111..556 1..446 2284 95.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10285-PA 541 GK10285-PA 96..541 1..446 2297 96.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17853-PA 532 GE17853-PA 87..532 1..446 2364 99.3 Plus