Clone LD36089 Report

Search the DGRC for LD36089

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:360
Well:89
Vector:pOT2
Associated Gene/TranscriptFit1-RA
Protein status:LD36089.pep: gold
Preliminary Size:2964
Sequenced Size:3072

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14991 2002-05-15 Blastp of sequenced clone
Fit1 2008-04-29 Release 5.5 accounting
Fit1 2008-08-15 Release 5.9 accounting
Fit1 2008-12-18 5.12 accounting

Clone Sequence Records

LD36089.complete Sequence

3072 bp (3072 high quality bases) assembled on 2002-05-15

GenBank Submission: AY118556

> LD36089.complete
CTCGTTCGCTTTGTCTCGTCGCCCGCGACGTGTTGTTTTGTGAAAATTTG
CATCGCATTTTTGAGCGCGTGCATTAGTGTTCGTCGGTGTGTTGATGTGC
GAGGAAAAGAGCGAGGAAAACGCTGCGAATTGCGATTGCTAGAGAGATCG
GGAAAACAAAACATCCCAAGCAGCAGCAAGCAAGCCATCAAAATCGTAAC
CTTGGGCGTGTGTTAATCAAGTGATCCGTACATCCCCGCCTCTCCCCCCC
TTTTATCATCATACATACCACCACCATCTCTACATCCAACGATTTTGATC
TGGATTACTCGGCTTGTTGGATTGTTGGGTCTGTTTCGCTGGCGTTTCTG
TTTCCGTGCAAACATCTGGCGAGATAAGGGCCTATATAGTTTCGCCACCG
CCACAGTCGCAGTCCCCCCCTCTCCGCTCCCCGCCAGCCAACGACAACGA
CAAGAACAACAAAAACTTGGTTGCAAAAACGGTGCTGAACGTAAGTTGAA
TTACGTCATCGTTTCGAGGGCAAATTTAGACTCTGATTGTGCCATATATA
TACACTATACAAATATACCCGCAGTTATAGTTTCGCCTTTGGACAGAAGA
GACGCCCGCGCATCGGAACTTTTAGCGAAAGATGATTCATGTGGGCGAAA
ATACGTGGAACCTGCGGATCCTCATCACGGATCTGCAGGTGGAGAAGACG
CTGCGCGTGAAGGGTGACCAGCACATTGGCGGCGTAATGCTGAACCTGGT
GGATCCGGAGTTGCCCAAGGATTGGTCCGATCACGCCCTGTGGTGGCCCG
CCAAGAATATCTGGCTGACCAGGACGCGGTCCACTTTGGACCAGGCCGGA
GTTCAATCGGATTCCTTTCTGCACTTCACGCCCATGCACAAGACACTGAG
GGTGCAGATGCCCGATCTTCGTTATCTGGACTACCGCGTCAACTTTTCGG
CCAAAACTTTCGGAGCCGTTGTGAGCTTGTGCAAGGACCTGGACATTCGC
TATCCGGAGGAACTGTCTTTCTGCAAGCCCCTGGAACCGGAGCATCTGAA
GAAGAACTTCTCCAAGCTGCCGCAGCGAAAGATTCCGGTGGCGGAGGCAA
ATGGAATCGCATACGTGCAGCCAGCGCTGGACACCAACTCCTTTGTCCCG
ATCACAGGAGCCTATAACGGTAGCAATGGCAGCCTGGATCGCTCGCACAA
TGGCAATCTGCTGTGCGCTCCGGCTTCACCGTATACCCGACGGGCAGCCA
CTGCTCCGGGAACACCCATCAGCTCGCCCACGGGCACCTGGAAGCACAAC
TCCACTGGCTATGCTAGCTACGATTCCAACTCTAGTTTCGGAGACCTCCA
GGAGAATCTGGCCATGTCGCCAAGGTCGCCCAGTCCGGATGTACGAGCAC
GCTTGGTTCGACCCAAGTCCCGGGTGGAGAAAGCCCGTCTCAACGTGGGA
TGGTTGGACTCGTCCCTTTCCATCATGGAGCAGGGAGTTAGGGAGTATGA
CACTCTGTGCCTGCGCTTCAAATACTTCACGTTCTTCGATCTGAACCCCA
AGTACGACCAAGTGAGGATCAATCAACTGTACGAGCAAGCCAAATGGAGC
ATTTTGAACGAGGAATTGGAACCCACCGAGGAGGAGACCCTCATGTTTGC
CGCCCTGCAGTTCCAGGTGAATCATCAGACGGATCTGCATCCCCCAGGCA
TCGATTCCGGAATAGATACCTCCAGTCAGGAGACTGGCGGCGAGGACGAC
ATTGACTCCGCTCTCAACGAGCTGCAGATCACACTCGAAGGACCAGGAGG
TGGCAAGGATCAGGGCAACATCACCAGGATACCAGAGCTGTCGGACTATT
TGAAATTCCTCAAGCCTCAAAGGTTCACCCTTAAAGGATACAAGCGCTAC
TTCTTCACCTACAGGGATCTGCATCTGCACCTTTACAAATCGCAGGATGA
GTCCAGGCGGGGAGCTCCCACCATCAGCATCAATTTGAAGGGCTGCGAGG
TGACGCCCGATGTTAACCTGGCCCAAGGAAAGTTCGCCATCCGTCTGGAA
GTTCCGTCAGAGATCAGAAATGGTCCGAACAGTGAGGTCTGGGTGAGATG
CGACAACGAAGAGCAGTACGCCAAGTGGATGGCAGCCTGTCGTCTGGCCG
CCAAGGGTCGCTCTCTAGCCGATAGCTCTTACGACAGCGAAGTTAGCAGT
ATTCGCTCGCTGCTGCAGATGCAGAAACCCGCCCAGGGAGCTCCGCTCAC
CGTCAACCCGCGAAGTGTTGAGCCCATGGATTACCTATCGCCCAAAATGA
TGCGCAAACTATCCAGCAAGGCGGTGCAGAGGATCCTAGAGGCCCATGCC
AACGTTCGCCAGCTGAGCTTAATGGACGCCAAGATGAAGTACATCCAGGC
TTGGCAATCTCTACCAGACTTCGGTGTTACTCTCTTCATCATCAAGTTCG
ATGGACACAAGAAGGAGGAGCTGTTGGGCGTGGCCAACAATCGTATCATG
CGCATGGACCTCAACACCGGCGATCACATAAAGACCTGGCGCTACAACAC
AATGAAGGCCTGGAATGTTAACTGGGGCATCAAGTGCATGATGATTCAGC
TGCAGGACGAGAACATCGTCTTCTCCGTGCAGTCGGCCGACTGTAAGGTG
GTGCACGAGTTCATCGGCGGCTACATATTCATGTCCATGCGATCCAAGGA
GAACAACCAGACGCTGAACGAGGAGATGTTCCACAAGCTGACGGGCGGCT
GGTCGTAAACGGATTGGCGCAGTCTGGAGCATTGGACTGGAGTCTTGAGT
GCCAAGCACAAACCTCGTCGCATGTTCTACAGTTTTATCTACATATATTT
ACCTAATGTAGGGTGCGTTGATTTATGGGTTGACTGGTAATCTGTGGACC
ACACCAAGCAACTTCTTCGTAACTCTAGTTGTTAGTTTCTCAATGTTTTT
TTTCTGTTCGGTTTATCAACCTAAATACGTATATATTTTGTAAACAACTT
TGACGGACTAGTGTCCGACACCAGAAGTTGGTTTTCTTTTGTCGGCATTT
ACCTAAAAAAAAAAAAAAAAAA

LD36089.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Fit1-RA 3555 Fit1-RA 63..3127 1..3065 15325 100 Plus
Fit1-RB 3471 Fit1-RB 553..3043 575..3065 12455 100 Plus
Fit1-RB 3471 Fit1-RB 63..552 1..490 2450 100 Plus
Fit2-RA 2790 Fit2-RA 2103..2472 2385..2754 875 82.4 Plus
Fit2-RA 2790 Fit2-RA 1124..1389 1412..1677 640 82.7 Plus
Fit2-RA 2790 Fit2-RA 329..495 632..798 430 83.8 Plus
Fit2-RA 2790 Fit2-RA 1796..1958 2078..2240 365 81.5 Plus
Fit2-RA 2790 Fit2-RA 564..633 867..936 200 85.7 Plus
Fit2-RA 2790 Fit2-RA 1547..1647 1829..1929 190 79.2 Plus
Fit2-RA 2790 Fit2-RA 677..771 980..1074 175 78.9 Plus
Fit2-RA 2790 Fit2-RA 1689..1767 1971..2049 170 81 Plus
Fit2-RA 2790 Fit2-RA 1997..2084 2279..2366 170 79.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4103015..4106068 1..3054 15270 100 Plus
chr3L 24539361 chr3L 17014897..17016245 1412..2754 1850 76 Plus
chr3L 24539361 chr3L 17014102..17014544 632..1074 595 75.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4103629..4106693 1..3065 15325 100 Plus
3L 28110227 3L 17025453..17026801 1412..2754 1850 76 Plus
3L 28110227 3L 17024658..17025100 632..1074 610 75.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4103629..4106693 1..3065 15325 100 Plus
3L 28103327 3L 17019532..17019901 2385..2754 875 82.4 Plus
3L 28103327 3L 17018553..17018818 1412..1677 640 82.7 Plus
3L 28103327 3L 17017758..17017924 632..798 430 83.8 Plus
3L 28103327 3L 17019225..17019387 2078..2240 365 81.5 Plus
3L 28103327 3L 17017993..17018062 867..936 200 85.7 Plus
3L 28103327 3L 17018976..17019076 1829..1929 190 79.2 Plus
3L 28103327 3L 17018106..17018200 980..1074 175 78.9 Plus
3L 28103327 3L 17019118..17019196 1971..2049 170 81 Plus
3L 28103327 3L 17019426..17019513 2279..2366 170 79.5 Plus
Blast to na_te.dros performed 2019-03-15 22:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 3174..3225 1519..1570 134 73.1 Plus

LD36089.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:29:55 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4103015..4106068 1..3054 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:29 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RB 1..2127 632..2758 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:05 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RB 1..2127 632..2758 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:20 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RA 1..2127 632..2758 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:44 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RB 1..2127 632..2758 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:07 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RA 1..2127 632..2758 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:45 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RA 63..3116 1..3054 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:05 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RA 63..3116 1..3054 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:20 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RA 66..3119 1..3054 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:44 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RA 63..3116 1..3054 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:07 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
Fit1-RA 66..3119 1..3054 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:55 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4103629..4106682 1..3054 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:55 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4103629..4106682 1..3054 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:55 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4103629..4106682 1..3054 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:20 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4103629..4106682 1..3054 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:00 Download gff for LD36089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4103629..4106682 1..3054 100   Plus

LD36089.pep Sequence

Translation from 631 to 2757

> LD36089.pep
MIHVGENTWNLRILITDLQVEKTLRVKGDQHIGGVMLNLVDPELPKDWSD
HALWWPAKNIWLTRTRSTLDQAGVQSDSFLHFTPMHKTLRVQMPDLRYLD
YRVNFSAKTFGAVVSLCKDLDIRYPEELSFCKPLEPEHLKKNFSKLPQRK
IPVAEANGIAYVQPALDTNSFVPITGAYNGSNGSLDRSHNGNLLCAPASP
YTRRAATAPGTPISSPTGTWKHNSTGYASYDSNSSFGDLQENLAMSPRSP
SPDVRARLVRPKSRVEKARLNVGWLDSSLSIMEQGVREYDTLCLRFKYFT
FFDLNPKYDQVRINQLYEQAKWSILNEELEPTEEETLMFAALQFQVNHQT
DLHPPGIDSGIDTSSQETGGEDDIDSALNELQITLEGPGGGKDQGNITRI
PELSDYLKFLKPQRFTLKGYKRYFFTYRDLHLHLYKSQDESRRGAPTISI
NLKGCEVTPDVNLAQGKFAIRLEVPSEIRNGPNSEVWVRCDNEEQYAKWM
AACRLAAKGRSLADSSYDSEVSSIRSLLQMQKPAQGAPLTVNPRSVEPMD
YLSPKMMRKLSSKAVQRILEAHANVRQLSLMDAKMKYIQAWQSLPDFGVT
LFIIKFDGHKKEELLGVANNRIMRMDLNTGDHIKTWRYNTMKAWNVNWGI
KCMMIQLQDENIVFSVQSADCKVVHEFIGGYIFMSMRSKENNQTLNEEMF
HKLTGGWS*

LD36089.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10098-PA 711 GF10098-PA 1..711 1..708 3595 92.3 Plus
Dana\GF10099-PA 710 GF10099-PA 1..710 1..708 3041 78.2 Plus
Dana\GF18160-PA 117 GF18160-PA 8..85 394..504 195 44.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15193-PA 711 GG15193-PA 1..711 1..708 3763 97.5 Plus
Dere\GG13599-PA 715 GG13599-PA 1..715 1..708 2963 75.8 Plus
Dere\GG14324-PA 2836 GG14324-PA 275..413 548..690 156 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14564-PA 718 GH14564-PA 1..718 1..708 3324 87.3 Plus
Dgri\GH14500-PA 708 GH14500-PA 1..708 1..708 2946 76 Plus
Dgri\GH25291-PA 96 GH25291-PA 1..96 613..708 493 88.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
Fit1-PB 708 CG14991-PB 1..708 1..708 3748 100 Plus
Fit1-PA 708 CG14991-PA 1..708 1..708 3748 100 Plus
Fit2-PA 715 CG7729-PA 1..715 1..708 2873 75.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13891-PA 714 GI13891-PA 1..714 1..708 3341 86 Plus
Dmoj\GI13275-PA 708 GI13275-PA 1..708 1..708 2999 77.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17086-PA 711 GL17086-PA 1..711 1..708 3587 91.8 Plus
Dper\GL16192-PA 711 GL16192-PA 1..711 1..708 2996 77.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13408-PA 711 GA13408-PA 1..711 1..708 3587 91.8 Plus
Dpse\GA20549-PA 711 GA20549-PA 1..711 1..708 2997 77.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14624-PA 711 GM14624-PA 1..711 1..708 3781 97.9 Plus
Dsec\GM25681-PA 715 GM25681-PA 1..715 1..708 2948 75.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13812-PA 711 GD13812-PA 1..711 1..708 3794 98.5 Plus
Dsim\GD14686-PA 586 GD14686-PA 1..568 1..560 2206 72.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11745-PA 715 GJ11745-PA 1..715 1..708 3422 87.8 Plus
Dvir\GJ12044-PA 707 GJ12044-PA 1..707 1..708 2976 76.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11417-PA 717 GK11417-PA 1..717 1..708 3440 88.7 Plus
Dwil\GK17582-PA 721 GK17582-PA 1..721 1..708 2633 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21412-PA 711 GE21412-PA 1..711 1..708 3788 98.2 Plus
Dyak\GE19895-PA 715 GE19895-PA 1..715 1..708 2936 75.7 Plus

LD36089.hyp Sequence

Translation from 631 to 2757

> LD36089.hyp
MIHVGENTWNLRILITDLQVEKTLRVKGDQHIGGVMLNLVDPELPKDWSD
HALWWPAKNIWLTRTRSTLDQAGVQSDSFLHFTPMHKTLRVQMPDLRYLD
YRVNFSAKTFGAVVSLCKDLDIRYPEELSFCKPLEPEHLKKNFSKLPQRK
IPVAEANGIAYVQPALDTNSFVPITGAYNGSNGSLDRSHNGNLLCAPASP
YTRRAATAPGTPISSPTGTWKHNSTGYASYDSNSSFGDLQENLAMSPRSP
SPDVRARLVRPKSRVEKARLNVGWLDSSLSIMEQGVREYDTLCLRFKYFT
FFDLNPKYDQVRINQLYEQAKWSILNEELEPTEEETLMFAALQFQVNHQT
DLHPPGIDSGIDTSSQETGGEDDIDSALNELQITLEGPGGGKDQGNITRI
PELSDYLKFLKPQRFTLKGYKRYFFTYRDLHLHLYKSQDESRRGAPTISI
NLKGCEVTPDVNLAQGKFAIRLEVPSEIRNGPNSEVWVRCDNEEQYAKWM
AACRLAAKGRSLADSSYDSEVSSIRSLLQMQKPAQGAPLTVNPRSVEPMD
YLSPKMMRKLSSKAVQRILEAHANVRQLSLMDAKMKYIQAWQSLPDFGVT
LFIIKFDGHKKEELLGVANNRIMRMDLNTGDHIKTWRYNTMKAWNVNWGI
KCMMIQLQDENIVFSVQSADCKVVHEFIGGYIFMSMRSKENNQTLNEEMF
HKLTGGWS*

LD36089.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Fit1-PB 708 CG14991-PB 1..708 1..708 3748 100 Plus
Fit1-PA 708 CG14991-PA 1..708 1..708 3748 100 Plus
Fit2-PA 715 CG7729-PA 1..715 1..708 2873 75.6 Plus