Clone LD36129 Report

Search the DGRC for LD36129

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:361
Well:29
Vector:pOT2
Associated Gene/TranscriptCG7988-RA
Protein status:LD36129.pep: gold
Preliminary Size:863
Sequenced Size:916

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7988 2002-01-01 Sim4 clustering to Release 2
CG7988 2002-05-18 Blastp of sequenced clone
CG7988 2003-01-01 Sim4 clustering to Release 3
CG7988 2008-04-29 Release 5.5 accounting
CG7988 2008-08-15 Release 5.9 accounting
CG7183 2008-08-15 Release 5.9 accounting
CG7988 2008-12-18 5.12 accounting
CG7183 2008-12-18 5.12 accounting

Clone Sequence Records

LD36129.complete Sequence

916 bp (916 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118957

> LD36129.complete
AAAAGAAGAAGCGTGTTTATTTACCTTTTGGAATGTCGAACTCTGGAGAG
GATTTTCAGGTGGTAACGCGCAAGAAATGGATGGCTCGTAAGTGCCTGAG
GCGGCGGGATCGCCATAAATCCGAAAGCGATTACCTAATCGACTGTCCGG
ATGTGAATGTGGAGAAATTTCAGCCGCGCCTTGAGAACCTGTGCACCGAG
ATGTGCCAAAGCGACTACTTTCTGGTGGCCATGGAAGCGCTGCAGCAGCA
ACTGGAGGGCATTAGGAAACCGTTGGAGCGAATTGTTTGCCTGGGACTGG
GACCTTTCTCCCGCACCTACCATGCCCTGCATCAGGCTGCATTTGTGATT
GGACTGCATCGGCATCACAAGATCAGAGAGGCCTTGTACTTCGATCCCGT
CTTCAGAGACAGCGAGAAGGAACTGATCCGGCTGTTCGACGGTTGTATAA
TGAGCAAAGACTGCGCGGGCAAGCACGAGGCGACGGTGCCCACGCTCTAT
TATCTGCCACACTGCCCCTACGCTCTGATGCATAACATCCTGTGGTCCAA
TTGGAAGCGGGAGACACTGCCCAACGTTTTTCTCATCTCGAATAGCTTCG
AAATGCTGACCATGACGCCCAGAAACCAGGATGACCACATAACAAGAATA
GTAGAACATTGTACAGAAACTCCGCTGGAAGATGACTACGAGCACCACAA
TGTATTCAACGACTTGTCGCTGCACACGTTCCCCCAGGAATCCTTGCCCG
GTAGCAACGACGAAGCGTTCTGGACACGATGTGCTCCCTTGAAGGTAAAC
GAGGATGAACTGATCACGGAAACGGAGACGAGCCTTGCTGCCCTGAAGCT
TGAATCTGAATAAATGATCATAGCGTTGGACTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

LD36129.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-RA 891 CG7988-RA 1..888 1..888 4440 100 Plus
CG7183-RA 2386 CG7183-RA 1..150 174..25 750 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14045058..14045767 176..885 3550 100 Plus
chr3R 27901430 chr3R 14044820..14044995 1..176 880 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18220764..18221476 176..888 3565 100 Plus
3R 32079331 3R 18220526..18220701 1..176 880 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17961595..17962307 176..888 3565 100 Plus
3R 31820162 3R 17961357..17961532 1..176 880 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:57:02 has no hits.

LD36129.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:57:40 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14044820..14044994 1..175 100 -> Plus
chr3R 14045058..14045767 176..885 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:32 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..831 33..863 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:20 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..831 33..863 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:37:21 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..831 33..863 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:32 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..831 33..863 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:40 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..831 33..863 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:17 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..885 1..885 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:20 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..885 1..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:37:21 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..885 1..885 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:32 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..885 1..885 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:40 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
CG7988-RA 1..885 1..885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:40 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18220526..18220700 1..175 100 -> Plus
3R 18220764..18221473 176..885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:40 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18220526..18220700 1..175 100 -> Plus
3R 18220764..18221473 176..885 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:57:40 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18220526..18220700 1..175 100 -> Plus
3R 18220764..18221473 176..885 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:37:21 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14046248..14046422 1..175 100 -> Plus
arm_3R 14046486..14047195 176..885 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:54 Download gff for LD36129.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17961595..17962304 176..885 100   Plus
3R 17961357..17961531 1..175 100 -> Plus

LD36129.hyp Sequence

Translation from 2 to 862

> LD36129.hyp
KKKRVYLPFGMSNSGEDFQVVTRKKWMARKCLRRRDRHKSESDYLIDCPD
VNVEKFQPRLENLCTEMCQSDYFLVAMEALQQQLEGIRKPLERIVCLGLG
PFSRTYHALHQAAFVIGLHRHHKIREALYFDPVFRDSEKELIRLFDGCIM
SKDCAGKHEATVPTLYYLPHCPYALMHNILWSNWKRETLPNVFLISNSFE
MLTMTPRNQDDHITRIVEHCTETPLEDDYEHHNVFNDLSLHTFPQESLPG
SNDEAFWTRCAPLKVNEDELITETETSLAALKLESE*

LD36129.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-PA 276 CG7988-PA 1..276 11..286 1494 100 Plus

LD36129.pep Sequence

Translation from 32 to 862

> LD36129.pep
MSNSGEDFQVVTRKKWMARKCLRRRDRHKSESDYLIDCPDVNVEKFQPRL
ENLCTEMCQSDYFLVAMEALQQQLEGIRKPLERIVCLGLGPFSRTYHALH
QAAFVIGLHRHHKIREALYFDPVFRDSEKELIRLFDGCIMSKDCAGKHEA
TVPTLYYLPHCPYALMHNILWSNWKRETLPNVFLISNSFEMLTMTPRNQD
DHITRIVEHCTETPLEDDYEHHNVFNDLSLHTFPQESLPGSNDEAFWTRC
APLKVNEDELITETETSLAALKLESE*

LD36129.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18513-PA 276 GF18513-PA 1..276 1..276 1192 78.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22737-PA 276 GG22737-PA 1..276 1..276 1408 93.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15774-PA 280 GH15774-PA 1..280 1..275 1029 67.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7988-PA 276 CG7988-PA 1..276 1..276 1494 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23725-PA 281 GI23725-PA 1..281 1..275 1050 68.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12599-PA 270 GL12599-PA 1..266 1..266 1169 77.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20744-PA 270 GA20744-PA 1..266 1..266 1153 76.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15288-PA 276 GM15288-PA 1..276 1..276 1445 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19215-PA 276 GD19215-PA 1..276 1..276 1458 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23283-PA 282 GJ23283-PA 1..282 1..275 1054 68.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11843-PA 293 GK11843-PA 24..285 5..263 942 65.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25521-PA 276 GE25521-PA 1..276 1..276 1389 91.3 Plus