Clone LD36157 Report

Search the DGRC for LD36157

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:361
Well:57
Vector:pOT2
Associated Gene/TranscriptCG8326-RA
Protein status:LD36157.pep: gold
Preliminary Size:1422
Sequenced Size:1273

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8326 2001-01-01 Release 2 assignment
CG8326 2001-07-04 Blastp of sequenced clone
CG8326 2003-01-01 Sim4 clustering to Release 3
CG8326 2008-04-29 Release 5.5 accounting
CG8326 2008-08-15 Release 5.9 accounting
CG8326 2008-12-18 5.12 accounting

Clone Sequence Records

LD36157.complete Sequence

1273 bp (1273 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051866

> LD36157.complete
CGATACCACGAGTTTGTTTTACAAAAATTGAACCAAAACCCAAAATAAAT
GGCTCGGAAACGAAAGATTCCCGTGCGCAAGCACCACGGCGTCCGTGATC
CCCTCAAGCAGCTGGAACAGAAGGAGAAGAAACTTTCCAAAGTAACGAAC
AATCCGCCTGTGAAAAAGGATGAGCAGCAGGTGTCCTTTAAGTTCCGTCA
GTTTCAGCAGCTTGCCAACGCCACCAAATCGGGCAAGAAGCTAAGATTGG
GCGAAATTGGACGGGAGGATAAGCCCAAATCCTCTCCAGGATCCAAGCCT
GGCAGTAGTTCCTCCTCAAAGGAAACGCGTAACATCAAGCAGTTCGCCAA
CGAAACGGACGAGGATTATCTGCGCCGAGTGAATCGCATGACCAATGCAT
CCGTACGGGAAGCCCACTACGAGGCCAAGTATGGTGTGAACGTGATCAGA
AACCCCAAAACCGGGGAGATTACTGTCCAAAAGAGGCCGAAAAACGAGAT
CGACGAGCTGCTCAAGCAGAAGCAAAAGGAGCAACGGCTGGCGGGCAAAA
GGGGTCGCAAAAAGGTTCAAGTCGTACACAAGCCCATGGATGCGAAGACC
AGTCGCGAATTGGTGAAGAGGGCCTACAAGGAGGCCCAGCAAGAGGTTGA
TACCGAGGAGAAGCAGAATGCCGGGCCAACAGAATTCAAACAGGATGCTG
TGGCATTTGGTGAGATCGTCCATGCCCCACCTTCCCTCAAAATCCTGCCG
CGCAAAGCGGAAAAAAGTGAAACCGTGCCGCGTCCAGGACGCAAAGCCAA
TCTCCTTCTAAAGTCCATGCTGAATCCCGACCAGGGTCAGTCAAATCGTG
GGCCGGAGGACGACGACAGCAGTCGACTAAAGCTGGCTGCCCAATCTAAG
AGCGCCTTCAAAGCACCCACCAAGGCCCAGATGAAGGGCAAGCGGAAAGA
TCTGCCCTTGGCTACGAGGTCAATGCTTGAAACCGAGCGCAGCAAAATGG
TTCAGCTATACCGTCAGCTCAAAAACAAGACAACAGCAGATTCCTAACAG
ATTCTAGACTAGATACCAACGTACTTTTTTTTTTACATGAAAACAAGTTA
ACCTAATCCCTTAAGTTTCGTGAATGCGTTTGCTACCCACTGAAGGTCGT
AGTTTCATTATAGAATGTTAAATATATTGATGAGATTTTTATTAAATCTA
TTTTCATACAAAATAAAAAGTGCACTGTTTAATTCCACTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

LD36157.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8326-RA 1272 CG8326-RA 34..1272 1..1239 6195 100 Plus
nc_24409.a 414 nc_24409.a 62..172 111..1 555 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17517490..17518596 1239..132 5415 99.5 Minus
chrX 22417052 chrX 17518666..17518796 131..1 655 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17628163..17629271 1240..132 5545 100 Minus
X 23542271 X 17629341..17629471 131..1 655 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17636261..17637369 1240..132 5545 100 Minus
X 23527363 X 17637439..17637569 131..1 655 100 Minus
Blast to na_te.dros performed on 2019-03-16 04:20:24 has no hits.

LD36157.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:21:15 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17517490..17518596 132..1239 99 <- Minus
chrX 17518666..17518796 1..131 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:34 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 1..999 49..1047 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:18:04 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 1..999 49..1047 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:43 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 1..999 49..1047 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:37 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 1..999 49..1047 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:33 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 1..999 49..1047 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:13:06 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 6..1244 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:18:03 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 6..1244 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:43 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 22..1260 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:37 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 6..1244 1..1239 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:33 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
CG8326-RA 22..1260 1..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:15 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
X 17628164..17629271 132..1239 100 <- Minus
X 17629341..17629471 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:15 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
X 17628164..17629271 132..1239 100 <- Minus
X 17629341..17629471 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:15 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
X 17628164..17629271 132..1239 100 <- Minus
X 17629341..17629471 1..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:43 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17522197..17523304 132..1239 100 <- Minus
arm_X 17523374..17523504 1..131 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:48 Download gff for LD36157.complete
Subject Subject Range Query Range Percent Splice Strand
X 17636262..17637369 132..1239 100 <- Minus
X 17637439..17637569 1..131 100   Minus

LD36157.hyp Sequence

Translation from 48 to 1046

> LD36157.hyp
MARKRKIPVRKHHGVRDPLKQLEQKEKKLSKVTNNPPVKKDEQQVSFKFR
QFQQLANATKSGKKLRLGEIGREDKPKSSPGSKPGSSSSSKETRNIKQFA
NETDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNE
IDELLKQKQKEQRLAGKRGRKKVQVVHKPMDAKTSRELVKRAYKEAQQEV
DTEEKQNAGPTEFKQDAVAFGEIVHAPPSLKILPRKAEKSETVPRPGRKA
NLLLKSMLNPDQGQSNRGPEDDDSSRLKLAAQSKSAFKAPTKAQMKGKRK
DLPLATRSMLETERSKMVQLYRQLKNKTTADS*

LD36157.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8326-PA 332 CG8326-PA 1..332 1..332 1679 100 Plus

LD36157.pep Sequence

Translation from 48 to 1046

> LD36157.pep
MARKRKIPVRKHHGVRDPLKQLEQKEKKLSKVTNNPPVKKDEQQVSFKFR
QFQQLANATKSGKKLRLGEIGREDKPKSSPGSKPGSSSSSKETRNIKQFA
NETDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNE
IDELLKQKQKEQRLAGKRGRKKVQVVHKPMDAKTSRELVKRAYKEAQQEV
DTEEKQNAGPTEFKQDAVAFGEIVHAPPSLKILPRKAEKSETVPRPGRKA
NLLLKSMLNPDQGQSNRGPEDDDSSRLKLAAQSKSAFKAPTKAQMKGKRK
DLPLATRSMLETERSKMVQLYRQLKNKTTADS*

LD36157.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22552-PA 334 GF22552-PA 1..333 1..331 1191 74.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18174-PA 332 GG18174-PA 1..332 1..332 1604 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12541-PA 330 GH12541-PA 1..324 1..330 982 59.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8326-PA 332 CG8326-PA 1..332 1..332 1679 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14898-PA 325 GI14898-PA 1..317 1..327 986 64.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20393-PA 333 GL20393-PA 1..325 1..325 1045 68.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20989-PA 333 GA20989-PA 1..325 1..325 1046 68.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13306-PA 332 GM13306-PA 1..332 1..332 1667 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17352-PA 332 GD17352-PA 1..332 1..332 1688 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15329-PA 327 GJ15329-PA 1..316 1..325 884 63.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24990-PA 331 GK24990-PA 1..327 1..331 1040 64.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15584-PA 332 GE15584-PA 1..332 1..332 1669 96.1 Plus