Clone LD36162 Report

Search the DGRC for LD36162

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:361
Well:62
Vector:pOT2
Associated Gene/TranscriptHsp67Bb-RA
Protein status:LD36162.pep: gold
Preliminary Size:2213
Sequenced Size:1920

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4456 2001-01-01 Release 2 assignment
CG4460 2001-01-01 Release 2 assignment
CG32041 2001-09-19 Blastp of sequenced clone
CG32041 2003-01-01 Sim4 clustering to Release 3
Hsp22 2008-04-29 Release 5.5 accounting
Hsp67Bb 2008-08-15 Release 5.9 accounting
Hsp22 2008-08-15 Release 5.9 accounting
Hsp67Bb 2008-12-18 5.12 accounting
Hsp22 2008-12-18 5.12 accounting

Clone Sequence Records

LD36162.complete Sequence

1920 bp (1920 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060412.1

> LD36162.complete
AGCTGGCGAACCGGTTGAAATTCGTGCTCCGCCCCATAACTACAATGGCC
ACGTACGAACAGGTTAAGGATGTGCCCAACCATCCGGATGTGTATCTTAT
CGACGTTCGACGGAAGGAAGAGCTCCAGCAGACGGGCTTCATTCCAGCCA
GCATCAATATACCCTTGGATGAACTGGACAAGGCTCTAAATCTGGATGGA
TCTGCTTTTAAAAACAAGTACGGAAGATCGAAGCCGGAGAAGCAGTCGCC
AATCATATTCACCTGCCGGTCGGGAAATCGAGTCTTGGAAGCAGAGAAAA
TTGCCAAAAGTCAGGGATACAGCAATGTGGTGATCTACAAAGGCTCCTGG
AATGAATGGGCTCAAAAGGAGGGACTTTGACGATAAACGTCGCTATATTT
CTGAATAAATGAAGATTAATATTAATTAATTAATTAATTATTAATAGCTA
AAAAAAACAGAAAACTTTAATTATTTGTTAATATTAAGCTGTATTTTTCA
TATATCTCAAGTTCTTGACTACACCCATGGCAAGCTTATCAATACACACA
CGTATACACTCGCACTCAGAAAGCTGTGCACTCCCACAAAACTTTCTCTC
TCCCACTCTCTAATGGAGCTCTCTCAATCTGTCTCTCTGCGTATGGAAAC
TGACCTTCCCCAAGGCGCAACAGCGAGAGAGAACTTCGCTAAATGCTAAA
ATAAAAGGTAAATAAAGTAATATTTGGACACCCAGAGAGCCCCAGAAACT
TCCACGGAGTTCGCTAAAGAACAGTGAACAACCCCTAACTAAATGCCATT
GCCCGATTTCAGGCAAAGTGGAAAATTGCATCAGCAAAGGGCGAAGAAAA
TTCGAGAGAGTGCCGGTATTTTCTAGATTATATGGATTTCCTCTCTGCCA
AGAGTATAAATAGCCACCGGTTGGACACTGCGCTCTCAGTTCAAAAAAAC
CAAACCAACTGCTAACAACTCGAAGAAAGTCAACTAAATTAAAATTTCGC
CAGCTAAATAGAAATTTCATAGGATTGAAACTTCAGACAACAAGATTATC
TTCGAAACATAGAGGAAAAATTTAAAAAAAAAGCCAAGAAGTATTTCAAA
GACAACAATTGGACGGAATTTCATCAAATTATTCGAATTTGCATAAGAAG
CTTTTGTTGGAAAAACCAAGTTACCTTATTAACTACAATGCGTTCCTTAC
CGATGTTTTGGCGCATGGCCGAGGAGATGGCACGGATGCCACGCCTCTCC
TCGCCCTTTCACGCCTTCTTCCACGAGCCGCCCGTTTGGAGTGTGGCGCT
ACCGAGGAACTGGCAGCAGATTGCCCGCTGGCAGGAGCAGGAGTTCGCTC
CGCCGGCCACCGTCAACAAGGATGGCTACAAACTCACCCTGGACGTCAAG
GACTACAGCGAGCTAAAGGTCAAGGTGCTGGACGAGAGCGTTGTCCTGGT
GGAGGGAAAATCAGAGCAGCAGGAGGCCGAACAAGGTGGCTATAGCTCCA
GGCACTTCCTCCGCCGCTTCGTCCTGCCGGAAGGATACGAGGCGGACAAG
GTGACCTCAACGCTGAGCAGCGACGGCGTCCTGACCATCAGTGTGCCCAA
TCCTCCAGGCGTGCAGGAGACACTCAAGGAGCGTGAGGTGACCATCGAGC
AGACTGGCGAGCCGGCAAAGAAGTCCGCCGAGGAGCCAAATGACAAAGCC
GCCAGTCAGTAGAAATAAGTTAAGATTATACTAAAACCGATAAAATGCTA
GTGAACTCCTATGTTTAGATATTCCAAAACCTATCAAATTTAAGTTCTTG
TTAAATTAACAAGTTAATTTTAAAACAATTGTGATTCGGTAGCCCGCAAG
CCCAATATTTTTATGTAGAAGAAAATAAATATTCGAAAAGACTATATGAT
CAAAAAAAAAAAAAAAAAAA

LD36162.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp22-RA 1906 Hsp22-RA 1..1904 1..1905 9485 99.9 Plus
Hsp67Bb-RB 1906 Hsp67Bb-RB 1..1904 1..1905 9485 99.9 Plus
Hsp22-RB 944 Hsp22-RB 1..944 954..1898 4685 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9365288..9366856 326..1895 7380 98.3 Plus
chr3L 24539361 chr3L 9364824..9364988 1..165 795 98.8 Plus
chr3L 24539361 chr3L 9365056..9365215 166..325 785 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9373390..9374968 326..1905 7850 99.9 Plus
3L 28110227 3L 9372931..9373095 1..165 825 100 Plus
3L 28110227 3L 9373162..9373321 166..325 800 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9366490..9368068 326..1905 7860 99.9 Plus
3L 28103327 3L 9366031..9366195 1..165 825 100 Plus
3L 28103327 3L 9366262..9366421 166..325 800 100 Plus
Blast to na_te.dros performed 2019-03-16 19:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 8783..8818 687..722 117 80.6 Plus

LD36162.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:58:29 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9364824..9364988 1..165 98 -> Plus
chr3L 9365056..9365215 166..325 99 -> Plus
chr3L 9365288..9366860 326..1901 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:37 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RB 1..525 1188..1712 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:35 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RB 1..525 1188..1712 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:15 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1..525 1188..1712 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:31:01 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RB 1..525 1188..1712 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:47:32 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1..525 1188..1712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:48:05 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1..1900 1..1901 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:35 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1..1900 1..1901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:15 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1..1900 1..1901 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:31:01 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Bb-RB 1..1900 1..1901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:32 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp22-RA 1..1900 1..1901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:29 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9372931..9373095 1..165 100 -> Plus
3L 9373162..9373321 166..325 100 -> Plus
3L 9373390..9374964 326..1901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:29 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9372931..9373095 1..165 100 -> Plus
3L 9373162..9373321 166..325 100 -> Plus
3L 9373390..9374964 326..1901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:29 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9372931..9373095 1..165 100 -> Plus
3L 9373162..9373321 166..325 100 -> Plus
3L 9373390..9374964 326..1901 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:15 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9366031..9366195 1..165 100 -> Plus
arm_3L 9366262..9366421 166..325 100 -> Plus
arm_3L 9366490..9368064 326..1901 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:30 Download gff for LD36162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9366490..9368064 326..1901 99   Plus
3L 9366031..9366195 1..165 100 -> Plus
3L 9366262..9366421 166..325 100 -> Plus

LD36162.pep Sequence

Translation from 44 to 379

> LD36162.pep
MATYEQVKDVPNHPDVYLIDVRRKEELQQTGFIPASINIPLDELDKALNL
DGSAFKNKYGRSKPEKQSPIIFTCRSGNRVLEAEKIAKSQGYSNVVIYKG
SWNEWAQKEGL*

LD36162.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10688-PA 139 GF10688-PA 29..139 1..111 481 76.6 Plus
Dana\GF20128-PA 139 GF20128-PA 29..139 1..111 374 59.5 Plus
Dana\GF17119-PA 113 GF17119-PA 1..110 1..110 302 50 Plus
Dana\GF17037-PA 156 GF17037-PA 44..154 1..111 273 47.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15366-PA 111 GG15366-PA 1..111 1..111 568 96.4 Plus
Dere\GG19214-PA 110 GG19214-PA 1..110 1..110 311 52.7 Plus
Dere\GG11250-PA 155 GG11250-PA 43..153 1..111 267 48.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14585-PA 113 GH14585-PA 1..111 1..111 394 64.9 Plus
Dgri\GH25246-PA 111 GH25246-PA 1..110 1..110 321 54.5 Plus
Dgri\GH18596-PA 111 GH18596-PA 1..110 1..110 321 54.5 Plus
Dgri\GH18488-PA 125 GH18488-PA 13..123 1..111 246 45.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4456-PD 111 CG4456-PD 1..111 1..111 581 100 Plus
CG4456-PC 111 CG4456-PC 1..111 1..111 581 100 Plus
CG4456-PB 111 CG4456-PB 1..111 1..111 581 100 Plus
CG4456-PA 111 CG4456-PA 1..111 1..111 581 100 Plus
CG12279-PA 110 CG12279-PA 1..109 1..109 326 53.2 Plus
CG6000-PC 154 CG6000-PC 45..152 4..111 280 50 Plus
CG6000-PD 154 CG6000-PD 45..152 4..111 280 50 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12243-PA 114 GI12243-PA 3..112 2..111 391 63.6 Plus
Dmoj\GI10805-PA 111 GI10805-PA 1..110 1..110 304 53.6 Plus
Dmoj\GI24633-PA 172 GI24633-PA 63..170 4..111 265 47.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22440-PA 111 GL22440-PA 1..111 1..111 470 78.4 Plus
Dper\GL24425-PA 112 GL24425-PA 1..110 1..110 356 57.3 Plus
Dper\GL23397-PA 159 GL23397-PA 47..157 1..111 254 45.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24291-PA 111 GA24291-PA 1..111 1..111 466 77.5 Plus
Dpse\GA11529-PA 112 GA11529-PA 1..110 1..110 356 57.3 Plus
Dpse\GA27244-PA 159 GA27244-PA 47..157 1..111 255 45.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25139-PA 111 GM25139-PA 1..111 1..111 569 97.3 Plus
Dsec\GM24062-PA 110 GM24062-PA 1..110 1..110 310 52.7 Plus
Dsec\GM26554-PA 153 GM26554-PA 41..151 1..111 266 48.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14173-PA 111 GD14173-PA 1..111 1..111 569 97.3 Plus
Dsim\GD18858-PA 110 GD18858-PA 1..110 1..110 311 52.7 Plus
Dsim\GD21060-PA 153 GD21060-PA 41..151 1..111 266 48.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11475-PA 183 GJ11475-PA 72..181 2..111 370 60.9 Plus
Dvir\GJ14403-PA 111 GJ14403-PA 1..110 1..110 305 52.7 Plus
Dvir\GJ14195-PA 171 GJ14195-PA 62..169 4..111 254 46.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17634-PA 112 GK17634-PA 1..111 1..111 395 64 Plus
Dwil\GK11151-PA 155 GK11151-PA 46..153 4..111 290 50 Plus
Dwil\GK13732-PA 111 GK13732-PA 1..110 1..110 287 51.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Hsp67Bb-PA 111 GE20829-PA 1..111 1..111 551 92.8 Plus
Dyak\GE26219-PA 110 GE26219-PA 1..110 1..110 316 53.6 Plus
Dyak\GE23442-PA 155 GE23442-PA 46..153 4..111 264 50 Plus

LD36162.hyp Sequence

Translation from 1187 to 1711

> LD36162.hyp
MRSLPMFWRMAEEMARMPRLSSPFHAFFHEPPVWSVALPRNWQQIARWQE
QEFAPPATVNKDGYKLTLDVKDYSELKVKVLDESVVLVEGKSEQQEAEQG
GYSSRHFLRRFVLPEGYEADKVTSTLSSDGVLTISVPNPPGVQETLKERE
VTIEQTGEPAKKSAEEPNDKAASQ*

LD36162.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp22-PB 174 CG4460-PB 1..174 1..174 906 100 Plus
Hsp22-PA 174 CG4460-PA 1..174 1..174 906 100 Plus
Hsp23-PB 186 CG4463-PB 1..180 1..174 287 39.7 Plus
Hsp23-PA 186 CG4463-PA 1..180 1..174 287 39.7 Plus
Hsp26-PB 208 CG4183-PB 68..182 43..157 251 44.4 Plus