Clone LD36178 Report

Search the DGRC for LD36178

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:361
Well:78
Vector:pOT2
Associated Gene/Transcriptgig-RA
Protein status:LD36178.pep: gold
Preliminary Size:1520
Sequenced Size:5789

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6975 2001-01-01 Release 2 assignment
CG6975 2003-01-01 Sim4 clustering to Release 3
CG6975 2003-01-14 Blastp of sequenced clone
gig 2008-04-29 Release 5.5 accounting
gig 2008-08-15 Release 5.9 accounting
gig 2008-12-18 5.12 accounting

Clone Sequence Records

LD36178.complete Sequence

5789 bp (5789 high quality bases) assembled on 2003-01-14

GenBank Submission: AY069603

> LD36178.complete
ATTGTTTTTAGGACCTAGGCTAGGAATTACTGGTTGCACACACTCAGCGC
CACAGCTCCACCGACCACCGCCCTTGCAAGGACCCACCATGAACTCCAAG
GACAAGTCCAAGTTCAAGTTGTTCCTCAAATCGCTGCCGGCAGGTTACGT
GGGCGAGCGGACCCTGCGGCCGGAGTTTGAGAGGGAACTGCGTCCGGAGC
AGCCGGTGGCCCAGCGCTGCCGGATGCTGAAAGAGCTGGGCGACACGCAG
CTGCACAACTTCAATCTGGACGAGTCCGCCATCACCATTCTGTTCAATCT
CACCAACGATCTCATCGTGCCCAACAAGCCGGCAGAAACGCGGCAGATTG
CCTTGAGCTTCTATAAACGGCTCATTCACACACAGTACAAGAACCTGACC
ATCATGCGGGAGAAGTTCTTCCTGGTCATCCAGAACCACGAAGCCCGCGA
AGATCTGCGTCACCTTCTTGAGCTGCTCGACACCCTCACCGACAATGGGA
AGGATATCACAAACTTCGAGGAGAAGATTGGCAAGTTTATGCTGCTCTGG
ATCCCAGCCATTACGGAGGCCAATCTGCTTACCCCCTACCTTGACATTCT
GGTCAACCTGATCAAGTTCAATGCGGCGCATCTGGACAAAGACATCCTTG
TGGGCATCGTGCAGAACGCTTGCGATCTGAGCTGTAGCGTTACCGTAAAC
GAAATCGGTCTGCAGTGCCTCACAATTCTGGAGATGGTCATCGGGTACAC
CATCTTCCCAAGCGAACCGCTGCCGCAGTGCATCACCACCTTGTGCCGGA
CTGTGAATCATGCTCCTTACTGCCCGTCTTCTTTCAAGATCATGAAGAAC
CTCTTGGGCACCCAGTTGGGATACCATTCCATGAAGATGATGTGCAGTAT
CCTCAACGATCGAGCTCTTTACGATGATGCCCACCTGTTGCGTGGGGCCG
TGTTCCATCTAAACATGAACATCTTTGGCTCGAACATTATTTTCCAGGTT
TCGCCTATGACCTATGCAACGAATGTGCTGACAGCCTTCCTGCGGGCACT
AGACAGTCGTCAGGTGATCGTGACCTTCGAAGTCATCCTCAGCGTTCGCA
TGGTGATTACCAAGCGGCAGCTTTCAGAGATCATTTGGGATCTGATCTGC
GATATAATGTCCTCGATCGTTAGCAATATCGAGTATTACGAAGAAGTCAA
TATAAACAAGGATCGTCTGCATCACCTGCAGATCAATTTCCACGAGAATA
TCGACTGCATCGAGAAGCTGTTGCAGCAGGATAGATCCCAGATTCTGGGC
AATGTGGAGCGCATCTACGATCTCATCGAGCGAGTTGCCGACCGACGCCC
AGAGGCTTCCGTTCTAGCCCTAATCGAGTACCGATCCCGACGGGTTACAG
CAACGCGGCCAGATTGGCTTCAGGTGCTGGCCCAGTTCGTCCGGCGCTAC
TACCGCATGTCCAACGTTAACGTGCGCATTAAGACGATCGAGGCTCTAGT
TCAGATTATGGATCAAAACCGTGCCTGCTATGAAGAAGAAATCCTTAGTC
GCGTGGTGCTGGTGCACCTTTCCCATATTCATCTGGAGTCGAGTGTGCAG
GTGCGAGTGGCCGTGGCCCGGGCTCTTTCCAATTTTGCCACCCATTGCGA
CACGAAACGGTGCATGGATCTGCTAGATATCCTGGAGGCGCTCATCAATC
GACCCTTTGAGCACACGCGGCATGGATCCTCATCTGGAGAGGGTACACTT
GCAGAAGTGACCTTTGGATTGGTTAACAACGAATCCGAGATCTCGGATAT
TATCGCCGCAGTTGATGGTTTGGTCAAAGTGTTTGCCATCAAGCTGCATC
GTCTGCCAGGGATCCATGCTCTTAAAATATTTAACATTCTAATGGACCAC
CTGGAACTGCACTACGAACGACCAAAGATTTTCGAGCACATAAGTGTTGT
GCGCTATAAAATATTTGCTTGGTTGCTGAAGGCCCGGGCCAACGGCTCCT
ACCATATTGGTTATCCGGAGGGCAGCACCGAGGTGGTGAAATTTAGTCCA
TACCTGGGAATTGATTCACCACTGTTACCACAAGCCCACCCGACAGCGAT
ATCCATACGACGAGTCTGCAAGCTGATAGTGAGGTGCCTGGAACACGACA
CCGATTATCAGGTGTTCCAGCTAGTCATCAGGGAACTGCCGAAGGTGCTG
CAGAACAAGGCGCTGGTGCAGGGCAATGACATCGAGGAGCTGGCCAACAC
GCTCCTCAAGATCAATTTGGTTAGCAACAACAAGTTCAAGCGACCCACCG
ATGAGTTCCACGCCCTCGTTTTACCCGCCATAGCTTCATTGGTTATCTAT
CACGAAAGCCTGCAGCCGCAGCAGCACTACGGAATTATAACAGCTCTCAA
TTCGAGGGTACTTACTGGCATTGCCAGCGTCTGCATCAACACCATGACCA
TCCTTATACTAGAGATGCCGGAGGCGTTGATGCGAAAGCTGCCGGACGTA
CTGCTCCAAATGAGTAAGATGTCGGATACGAATGCGTTGGCCACTCCGGT
TCTGGAATTTCTGTCGTTGCTCATACATCTGTCCAAGCATCTCTTCGCAA
ACTTCACTTCCATGCACAACATGTACGTGTTTGCCATCACGCTGCCGTAC
ACCAAACCGCATCGCTACGATCACTATACAGTTTCCTTGGCCCACCATGT
CATCGCTGGATGGTTCCTTAAGTGTAAGCTGGAGCTGCGCAGGAACTGCG
TTAACTACATCAAAAGCTCGATTCAGTCGAATGCCAAGATGTTGTCCAGC
GACATTGTGAACCTAAACTCCTTAAACGAGGATTCATCCAATCGCAAGCG
GAGCACCAGTCTAACTGAGCGCGGTAGTCGCAACAATGCCAATGCCTGGA
ACGATCTGGAGATGCGACCGCAAATGAACAACGGTCTACGAAACTTCCAC
GCCGAACTGGCAGAGACGTGCTTTGATTTCTTGGCGCGACACACTTATTC
GCCTTGTCCGTCGATGCCCAAGCGTCTTCCAGCGGCGGAATTCCTGCTGA
AGGACGGCGTCTCGCAGACGTGGCTAGTGGGCAACAACCTGGTGACCATA
ACCACCTCCGGCTGTCCGTCGGCGCCCGCGCGCAGTGGGCTTTGCGAACG
ATGTGCCCAGCTAGGAAAGGCTCCCAGCATTAGTCTGAACTCGAAGAGCC
TCAGTGATGCAGCTCCTCCACTTTCGCCAGAGCGGGAGAGACGATACACC
AAGGTGAGCCTGCAGCACAGCAGCGGCAACGAGTCGGCTGGCAGCACGGA
GCTCACCTCCTCCTCGTCGTCGAACTCAGCAGCCGCAGGTGGTCATCCAC
ATCGACAGATTTCTAACAGTTCCACGGCATCGCTAGACGCGCTTTCCCGT
CGGGGGTCTAATCCCGAAGCCTTGGGCAGTGCCTTGGGCGAGGGGGCACA
TACGGGGAGCAACACCTCGCTCCTGGGAAACTCTTTGTCCCAATCCTCCG
TTAGCATGAGCCCTTCGTCGGGATCCGTGGTGCAGCAGCCGGTTTGCGTG
CGCGCCTGCACTGGCTGGGCGGAGGTTTTGGTTCGTCGGCCCACGGGCAA
CGTATCGTGGATAACCCGCATTCAGAACCCCATCACCAACGATTGCTTTG
GCCAGGAGTTGCCGTTCAATAATGTGGTGTCGCTGTTTCTTCCCACTGCC
CATGGCGGAGTTTTTGGACCTGACAATACCATTCAGGCCCCACCACATAC
GTTGGCTGATCCCGAACCAGAACCAGAAGCAGAGGTTAATGCAGCAACAG
CTCCTCAGGCAAGTGCATTGCGCAGCCGAATGGTTGCCAAGGCTCGTGCC
CTTCAGCGACAGGAAGAAATTCACTCGGTCGGAGGAAATGGAAATGGCAA
CGGCAACGGTAATGGTAGTGGAAATGCTCCCAGCACTGGAGGTGCTGCTG
CCATACCCATTCCGCGGGTCCCAGCATCTGGAAAACGCGGCAAGGAGGCA
GCTCTTTGTGGAAGTGTGAGTGATGGTGAAGCCGACGATGACTCCCTGGC
CTTTGAGGATGCTCAGAGTCGGGCACGAAATCCCGTCCGACGGGTAAATT
CCAGCCCAGAGATGAGTTCCAGTTGGCGGCAGTCGTTCCTAACCAACAAA
CCCACGCCACTGTCCCAGGAGCCCGTGAAAACCACCGCCGATGAACCGCA
ATCGCTGTTGACTTTGAAGAAGAAGACTGTTCAGTACAGCACCAAGGATA
TGCGTGTGAGCTGTGAGGCCATTCCGGAGGAGATCGCCGGCTCCACACCA
CCGTCGCAGGCCGCAGCCTTGGCCCTGCAGCCGGAAAGCGGCACCCTACC
TCCCAAGCAGCATTCGGCGGACGATGTCAGCAGTCATGTGGCTGGAGGAA
GTAACTTGCAAGCAGGAGGGTCCACGCTAAAGCTGGGTAAACCACCGCTG
TCGCCGGGGCAACCGCCTCTGCTGGGCACTGGTCGAGTGACCAGCTTTGG
TGGCACCTCTGTTCCGCAGCCCGGTGCACTGGCAAAATCGAGCAGCAGTG
GCAGCAATGGCACCAATGTTGGAGTGATAACCTCCGATTACGACAACGGC
AACAATGGAAACGGAGACATGATGCGAGGTCGTTCGAAAACCATTTCGGT
GGTGCGTGAAGTGAATAACGGAAATACGCGTCCGCCGCCGGCCAGCAGTT
TCCGGAATTTCGGAGCCGCAAAGCCGCCCATCAACACCAAGCTGTGCATG
AACCCGAGCTTTATTTTCATGCAACTGTACACCACTGGCCAGCTGGGAGT
TACGGATGAGCCTCTAAAGGTGGGTCCGGAAAACAGCAGCGCTGTCTCCC
TTATCGATTTAGTCCCACCGTTCGAGACGCACAAGATCGGCGTGCTGTAC
GTGGGCCAAGGGCAGTGCAACAACGAGGTGGAGATCTTGCGCAATTCGCA
CGGAAGTGCCAGGTATGTGGAGTTCCTGCGTAACATCGGCACCCTGGTCA
GTCTGAAGGAAGCTGAGCAGAACAATCTATTTATAATGCTAGATAGAAAC
GGAGCAGATGGCAAGTTTGCCTATATCTGGAAGGATGACATACTGCAGGT
TACGTTCCATGTCGCTACGCTGATGCCCACCAATCTGCAGGATGATCCCA
ACTGCAACGAGAAGAAGAGCCACATTGGCAATGACTTTGTGAAGATCATC
TACAACGAAAGCGGCGAGGAGTACAATCTAAACACAATATCCGGCCAATT
CAACTACGCCTGCGTGATCGTTGAGCCACTTGACCTGAACTCGAACAGGG
TGTATGTGAAGGCGCGATCGGAGATTTCGAAATTCGTGTGCCACGCAGAA
TACCGGATAGTGTCCGATCGCAGTGCTCCTCTTTTGGCCCGACAGATGGC
GCTGCACGCCAATCTCGCGTCGCTAGTCTACCAAAGTGTGCAGAAAAAGC
ATCCGTACGCATCGAATTGGCTAGAACGATTGCGCAAACTAAAGCGCCTG
CGATCGAAGCTAATTGAGGGCCTAAACAGCCAGCAAAAATCCGGAAGCGC
CTCGAGCGGCATCGGAATCAACGCCTCAGCCATTGGTTCGGATATGGACG
ACCAGCGAGGTGACTTCATTAAATACACATAGACAACAACGAGAGGCTCC
CAACTGGACAACTATTAAAAAAGAGCAGAGGACCTATAGACGCATCCTGC
CATGATATCTCTTGATTTACGATTTCAATATAAAGTCTCTCCAGACCAAC
AAAAGAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAA

LD36178.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
gig-RA 6155 gig-RA 56..5813 1..5758 28775 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20125275..20127351 3024..5100 10325 99.8 Plus
chr3L 24539361 chr3L 20123049..20123964 1045..1960 4520 99.6 Plus
chr3L 24539361 chr3L 20124029..20124635 1961..2567 3005 99.7 Plus
chr3L 24539361 chr3L 20118908..20119164 276..532 1270 99.6 Plus
chr3L 24539361 chr3L 20124959..20125215 2768..3024 1270 99.6 Plus
chr3L 24539361 chr3L 20128044..20128294 5508..5758 1255 100 Plus
chr3L 24539361 chr3L 20122787..20122996 837..1046 1050 100 Plus
chr3L 24539361 chr3L 20124702..20124901 2568..2767 985 99.5 Plus
chr3L 24539361 chr3L 20119412..20119586 664..838 875 100 Plus
chr3L 24539361 chr3L 20127660..20127830 5243..5413 855 100 Plus
chr3L 24539361 chr3L 20127409..20127555 5097..5243 735 100 Plus
chr3L 24539361 chr3L 20118506..20118650 1..145 725 100 Plus
chr3L 24539361 chr3L 20119216..20119355 525..664 685 99.3 Plus
chr3L 24539361 chr3L 20118708..20118841 141..274 670 100 Plus
chr3L 24539361 chr3L 20127886..20127985 5414..5513 485 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:30:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20135994..20138070 3024..5100 10385 100 Plus
3L 28110227 3L 20133763..20134678 1045..1960 4565 99.9 Plus
3L 28110227 3L 20134748..20135354 1961..2567 3035 100 Plus
3L 28110227 3L 20129619..20129878 273..532 1285 99.6 Plus
3L 28110227 3L 20135678..20135934 2768..3024 1285 100 Plus
3L 28110227 3L 20138763..20139013 5508..5758 1255 100 Plus
3L 28110227 3L 20133501..20133710 837..1046 1050 100 Plus
3L 28110227 3L 20135421..20135620 2568..2767 1000 100 Plus
3L 28110227 3L 20130126..20130300 664..838 875 100 Plus
3L 28110227 3L 20138379..20138549 5243..5413 855 100 Plus
3L 28110227 3L 20138128..20138274 5097..5243 735 100 Plus
3L 28110227 3L 20129221..20129365 1..145 725 100 Plus
3L 28110227 3L 20129930..20130069 525..664 700 100 Plus
3L 28110227 3L 20129422..20129555 141..274 670 100 Plus
3L 28110227 3L 20138605..20138704 5414..5513 485 99 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20129094..20131170 3024..5100 10385 100 Plus
3L 28103327 3L 20126863..20127778 1045..1960 4565 99.8 Plus
3L 28103327 3L 20127848..20128454 1961..2567 3035 100 Plus
3L 28103327 3L 20128778..20129034 2768..3024 1285 100 Plus
3L 28103327 3L 20122719..20122978 273..532 1285 99.6 Plus
3L 28103327 3L 20131863..20132113 5508..5758 1255 100 Plus
3L 28103327 3L 20126601..20126810 837..1046 1050 100 Plus
3L 28103327 3L 20128521..20128720 2568..2767 1000 100 Plus
3L 28103327 3L 20123226..20123400 664..838 875 100 Plus
3L 28103327 3L 20131479..20131649 5243..5413 855 100 Plus
3L 28103327 3L 20131228..20131374 5097..5243 735 100 Plus
3L 28103327 3L 20122321..20122465 1..145 725 100 Plus
3L 28103327 3L 20123030..20123169 525..664 700 100 Plus
3L 28103327 3L 20122522..20122655 141..274 670 100 Plus
3L 28103327 3L 20131705..20131804 5414..5513 485 99 Plus
Blast to na_te.dros performed on 2019-03-15 22:28:50 has no hits.

LD36178.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:29:57 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20119218..20119354 527..663 99 -> Plus
chr3L 20119412..20119586 664..838 100 -> Plus
chr3L 20127660..20127830 5243..5413 100 -> Plus
chr3L 20127886..20127981 5414..5509 100 -> Plus
chr3L 20118506..20118648 1..143 100 -> Plus
chr3L 20118907..20119158 275..526 99 -> Plus
chr3L 20118711..20118841 144..274 100 -> Plus
chr3L 20122789..20122995 839..1045 100 -> Plus
chr3L 20123050..20123964 1046..1960 99 -> Plus
chr3L 20124029..20124635 1961..2567 99 -> Plus
chr3L 20124702..20124901 2568..2767 99 -> Plus
chr3L 20124959..20125215 2768..3024 99 -> Plus
chr3L 20125276..20127349 3025..5098 99 -> Plus
chr3L 20127411..20127554 5099..5242 100 -> Plus
chr3L 20128046..20128294 5510..5758 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:40 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 1..5544 89..5632 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:08 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 1..5544 89..5632 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:24 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 1..5544 89..5632 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:59 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 1..5544 89..5632 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:09 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 1..5544 89..5632 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:08 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 40..5797 1..5758 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:08 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 40..5797 1..5758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:24 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 41..5795 1..5755 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:59 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 40..5797 1..5758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:09 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
gig-RA 41..5795 1..5755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:57 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20129621..20129872 275..526 100 -> Plus
3L 20129932..20130068 527..663 100 -> Plus
3L 20130126..20130300 664..838 100 -> Plus
3L 20133503..20133709 839..1045 100 -> Plus
3L 20138605..20138700 5414..5509 100 -> Plus
3L 20138765..20139013 5510..5758 100   Plus
3L 20129221..20129363 1..143 100 -> Plus
3L 20129425..20129555 144..274 100 -> Plus
3L 20133764..20134678 1046..1960 99 -> Plus
3L 20134748..20135354 1961..2567 100 -> Plus
3L 20135421..20135620 2568..2767 100 -> Plus
3L 20135678..20135934 2768..3024 100 -> Plus
3L 20135995..20138068 3025..5098 100 -> Plus
3L 20138130..20138273 5099..5242 100 -> Plus
3L 20138379..20138549 5243..5413 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:57 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20129621..20129872 275..526 100 -> Plus
3L 20129932..20130068 527..663 100 -> Plus
3L 20130126..20130300 664..838 100 -> Plus
3L 20133503..20133709 839..1045 100 -> Plus
3L 20138605..20138700 5414..5509 100 -> Plus
3L 20138765..20139013 5510..5758 100   Plus
3L 20129221..20129363 1..143 100 -> Plus
3L 20129425..20129555 144..274 100 -> Plus
3L 20133764..20134678 1046..1960 99 -> Plus
3L 20134748..20135354 1961..2567 100 -> Plus
3L 20135421..20135620 2568..2767 100 -> Plus
3L 20135678..20135934 2768..3024 100 -> Plus
3L 20135995..20138068 3025..5098 100 -> Plus
3L 20138130..20138273 5099..5242 100 -> Plus
3L 20138379..20138549 5243..5413 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:57 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20129621..20129872 275..526 100 -> Plus
3L 20129932..20130068 527..663 100 -> Plus
3L 20130126..20130300 664..838 100 -> Plus
3L 20133503..20133709 839..1045 100 -> Plus
3L 20138605..20138700 5414..5509 100 -> Plus
3L 20138765..20139013 5510..5758 100   Plus
3L 20129221..20129363 1..143 100 -> Plus
3L 20129425..20129555 144..274 100 -> Plus
3L 20133764..20134678 1046..1960 99 -> Plus
3L 20134748..20135354 1961..2567 100 -> Plus
3L 20135421..20135620 2568..2767 100 -> Plus
3L 20135678..20135934 2768..3024 100 -> Plus
3L 20135995..20138068 3025..5098 100 -> Plus
3L 20138130..20138273 5099..5242 100 -> Plus
3L 20138379..20138549 5243..5413 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:24 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20123032..20123168 527..663 100 -> Plus
arm_3L 20123226..20123400 664..838 100 -> Plus
arm_3L 20131230..20131373 5099..5242 100 -> Plus
arm_3L 20131479..20131649 5243..5413 100 -> Plus
arm_3L 20131705..20131800 5414..5509 100 -> Plus
arm_3L 20122321..20122463 1..143 100 -> Plus
arm_3L 20122525..20122655 144..274 100 -> Plus
arm_3L 20122721..20122972 275..526 100 -> Plus
arm_3L 20126603..20126809 839..1045 100 -> Plus
arm_3L 20126864..20127778 1046..1960 99 -> Plus
arm_3L 20127848..20128454 1961..2567 100 -> Plus
arm_3L 20128521..20128720 2568..2767 100 -> Plus
arm_3L 20128778..20129034 2768..3024 100 -> Plus
arm_3L 20129095..20131168 3025..5098 100 -> Plus
arm_3L 20131865..20132113 5510..5758 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:19 Download gff for LD36178.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20126603..20126809 839..1045 100 -> Plus
3L 20131479..20131649 5243..5413 100 -> Plus
3L 20131705..20131800 5414..5509 100 -> Plus
3L 20131865..20132113 5510..5758 100   Plus
3L 20122721..20122972 275..526 100 -> Plus
3L 20123032..20123168 527..663 100 -> Plus
3L 20123226..20123400 664..838 100 -> Plus
3L 20126864..20127778 1046..1960 99 -> Plus
3L 20127848..20128454 1961..2567 100 -> Plus
3L 20128521..20128720 2568..2767 100 -> Plus
3L 20128778..20129034 2768..3024 100 -> Plus
3L 20129095..20131168 3025..5098 100 -> Plus
3L 20131230..20131373 5099..5242 100 -> Plus
3L 20122321..20122463 1..143 100 -> Plus
3L 20122525..20122655 144..274 100 -> Plus

LD36178.hyp Sequence

Translation from 0 to 5631

> LD36178.hyp
LFLGPRLGITGCTHSAPQLHRPPPLQGPTMNSKDKSKFKLFLKSLPAGYV
GERTLRPEFERELRPEQPVAQRCRMLKELGDTQLHNFNLDESAITILFNL
TNDLIVPNKPAETRQIALSFYKRLIHTQYKNLTIMREKFFLVIQNHEARE
DLRHLLELLDTLTDNGKDITNFEEKIGKFMLLWIPAITEANLLTPYLDIL
VNLIKFNAAHLDKDILVGIVQNACDLSCSVTVNEIGLQCLTILEMVIGYT
IFPSEPLPQCITTLCRTVNHAPYCPSSFKIMKNLLGTQLGYHSMKMMCSI
LNDRALYDDAHLLRGAVFHLNMNIFGSNIIFQVSPMTYATNVLTAFLRAL
DSRQVIVTFEVILSVRMVITKRQLSEIIWDLICDIMSSIVSNIEYYEEVN
INKDRLHHLQINFHENIDCIEKLLQQDRSQILGNVERIYDLIERVADRRP
EASVLALIEYRSRRVTATRPDWLQVLAQFVRRYYRMSNVNVRIKTIEALV
QIMDQNRACYEEEILSRVVLVHLSHIHLESSVQVRVAVARALSNFATHCD
TKRCMDLLDILEALINRPFEHTRHGSSSGEGTLAEVTFGLVNNESEISDI
IAAVDGLVKVFAIKLHRLPGIHALKIFNILMDHLELHYERPKIFEHISVV
RYKIFAWLLKARANGSYHIGYPEGSTEVVKFSPYLGIDSPLLPQAHPTAI
SIRRVCKLIVRCLEHDTDYQVFQLVIRELPKVLQNKALVQGNDIEELANT
LLKINLVSNNKFKRPTDEFHALVLPAIASLVIYHESLQPQQHYGIITALN
SRVLTGIASVCINTMTILILEMPEALMRKLPDVLLQMSKMSDTNALATPV
LEFLSLLIHLSKHLFANFTSMHNMYVFAITLPYTKPHRYDHYTVSLAHHV
IAGWFLKCKLELRRNCVNYIKSSIQSNAKMLSSDIVNLNSLNEDSSNRKR
STSLTERGSRNNANAWNDLEMRPQMNNGLRNFHAELAETCFDFLARHTYS
PCPSMPKRLPAAEFLLKDGVSQTWLVGNNLVTITTSGCPSAPARSGLCER
CAQLGKAPSISLNSKSLSDAAPPLSPERERRYTKVSLQHSSGNESAGSTE
LTSSSSSNSAAAGGHPHRQISNSSTASLDALSRRGSNPEALGSALGEGAH
TGSNTSLLGNSLSQSSVSMSPSSGSVVQQPVCVRACTGWAEVLVRRPTGN
VSWITRIQNPITNDCFGQELPFNNVVSLFLPTAHGGVFGPDNTIQAPPHT
LADPEPEPEAEVNAATAPQASALRSRMVAKARALQRQEEIHSVGGNGNGN
GNGNGSGNAPSTGGAAAIPIPRVPASGKRGKEAALCGSVSDGEADDDSLA
FEDAQSRARNPVRRVNSSPEMSSSWRQSFLTNKPTPLSQEPVKTTADEPQ
SLLTLKKKTVQYSTKDMRVSCEAIPEEIAGSTPPSQAAALALQPESGTLP
PKQHSADDVSSHVAGGSNLQAGGSTLKLGKPPLSPGQPPLLGTGRVTSFG
GTSVPQPGALAKSSSSGSNGTNVGVITSDYDNGNNGNGDMMRGRSKTISV
VREVNNGNTRPPPASSFRNFGAAKPPINTKLCMNPSFIFMQLYTTGQLGV
TDEPLKVGPENSSAVSLIDLVPPFETHKIGVLYVGQGQCNNEVEILRNSH
GSARYVEFLRNIGTLVSLKEAEQNNLFIMLDRNGADGKFAYIWKDDILQV
TFHVATLMPTNLQDDPNCNEKKSHIGNDFVKIIYNESGEEYNLNTISGQF
NYACVIVEPLDLNSNRVYVKARSEISKFVCHAEYRIVSDRSAPLLARQMA
LHANLASLVYQSVQKKHPYASNWLERLRKLKRLRSKLIEGLNSQQKSGSA
SSGIGINASAIGSDMDDQRGDFIKYT*

LD36178.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
gig-PA 1847 CG6975-PA 1..1847 30..1876 9508 100 Plus
gig-PB 1844 CG6975-PB 1..1844 30..1876 9481 99.8 Plus
CG5521-PA 1958 CG5521-PA 1615..1795 1618..1804 200 32.1 Plus
CG5521-PB 1964 CG5521-PB 1621..1801 1618..1804 200 32.1 Plus
RapGAP1-PE 850 CG44086-PE 315..485 1609..1778 187 31.2 Plus

LD36178.pep Sequence

Translation from 88 to 5631

> LD36178.pep
MNSKDKSKFKLFLKSLPAGYVGERTLRPEFERELRPEQPVAQRCRMLKEL
GDTQLHNFNLDESAITILFNLTNDLIVPNKPAETRQIALSFYKRLIHTQY
KNLTIMREKFFLVIQNHEAREDLRHLLELLDTLTDNGKDITNFEEKIGKF
MLLWIPAITEANLLTPYLDILVNLIKFNAAHLDKDILVGIVQNACDLSCS
VTVNEIGLQCLTILEMVIGYTIFPSEPLPQCITTLCRTVNHAPYCPSSFK
IMKNLLGTQLGYHSMKMMCSILNDRALYDDAHLLRGAVFHLNMNIFGSNI
IFQVSPMTYATNVLTAFLRALDSRQVIVTFEVILSVRMVITKRQLSEIIW
DLICDIMSSIVSNIEYYEEVNINKDRLHHLQINFHENIDCIEKLLQQDRS
QILGNVERIYDLIERVADRRPEASVLALIEYRSRRVTATRPDWLQVLAQF
VRRYYRMSNVNVRIKTIEALVQIMDQNRACYEEEILSRVVLVHLSHIHLE
SSVQVRVAVARALSNFATHCDTKRCMDLLDILEALINRPFEHTRHGSSSG
EGTLAEVTFGLVNNESEISDIIAAVDGLVKVFAIKLHRLPGIHALKIFNI
LMDHLELHYERPKIFEHISVVRYKIFAWLLKARANGSYHIGYPEGSTEVV
KFSPYLGIDSPLLPQAHPTAISIRRVCKLIVRCLEHDTDYQVFQLVIREL
PKVLQNKALVQGNDIEELANTLLKINLVSNNKFKRPTDEFHALVLPAIAS
LVIYHESLQPQQHYGIITALNSRVLTGIASVCINTMTILILEMPEALMRK
LPDVLLQMSKMSDTNALATPVLEFLSLLIHLSKHLFANFTSMHNMYVFAI
TLPYTKPHRYDHYTVSLAHHVIAGWFLKCKLELRRNCVNYIKSSIQSNAK
MLSSDIVNLNSLNEDSSNRKRSTSLTERGSRNNANAWNDLEMRPQMNNGL
RNFHAELAETCFDFLARHTYSPCPSMPKRLPAAEFLLKDGVSQTWLVGNN
LVTITTSGCPSAPARSGLCERCAQLGKAPSISLNSKSLSDAAPPLSPERE
RRYTKVSLQHSSGNESAGSTELTSSSSSNSAAAGGHPHRQISNSSTASLD
ALSRRGSNPEALGSALGEGAHTGSNTSLLGNSLSQSSVSMSPSSGSVVQQ
PVCVRACTGWAEVLVRRPTGNVSWITRIQNPITNDCFGQELPFNNVVSLF
LPTAHGGVFGPDNTIQAPPHTLADPEPEPEAEVNAATAPQASALRSRMVA
KARALQRQEEIHSVGGNGNGNGNGNGSGNAPSTGGAAAIPIPRVPASGKR
GKEAALCGSVSDGEADDDSLAFEDAQSRARNPVRRVNSSPEMSSSWRQSF
LTNKPTPLSQEPVKTTADEPQSLLTLKKKTVQYSTKDMRVSCEAIPEEIA
GSTPPSQAAALALQPESGTLPPKQHSADDVSSHVAGGSNLQAGGSTLKLG
KPPLSPGQPPLLGTGRVTSFGGTSVPQPGALAKSSSSGSNGTNVGVITSD
YDNGNNGNGDMMRGRSKTISVVREVNNGNTRPPPASSFRNFGAAKPPINT
KLCMNPSFIFMQLYTTGQLGVTDEPLKVGPENSSAVSLIDLVPPFETHKI
GVLYVGQGQCNNEVEILRNSHGSARYVEFLRNIGTLVSLKEAEQNNLFIM
LDRNGADGKFAYIWKDDILQVTFHVATLMPTNLQDDPNCNEKKSHIGNDF
VKIIYNESGEEYNLNTISGQFNYACVIVEPLDLNSNRVYVKARSEISKFV
CHAEYRIVSDRSAPLLARQMALHANLASLVYQSVQKKHPYASNWLERLRK
LKRLRSKLIEGLNSQQKSGSASSGIGINASAIGSDMDDQRGDFIKYT*

LD36178.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25310-PA 1828 GF25310-PA 1..1828 1..1847 8416 87.7 Plus
Dana\GF23263-PA 1959 GF23263-PA 1616..1796 1589..1775 208 32.1 Plus
Dana\GF14020-PA 856 GF14020-PA 319..489 1580..1749 196 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16081-PA 1849 GG16081-PA 1..1849 1..1847 9676 97.2 Plus
Dere\GG11515-PA 1956 GG11515-PA 1613..1793 1589..1775 208 32.1 Plus
Dere\GG23525-PA 852 GG23525-PA 317..487 1580..1749 197 32.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16331-PA 1868 GH16331-PA 1..1856 1..1821 6526 71 Plus
Dgri\GH18626-PA 2021 GH18626-PA 1674..1853 1589..1774 207 31.7 Plus
Dgri\GH10582-PA 866 GH10582-PA 325..495 1580..1749 197 33 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
gig-PA 1847 CG6975-PA 1..1847 1..1847 9508 100 Plus
gig-PB 1844 CG6975-PB 1..1844 1..1847 9481 99.8 Plus
CG5521-PA 1958 CG5521-PA 1615..1795 1589..1775 200 32.1 Plus
CG5521-PB 1964 CG5521-PB 1621..1801 1589..1775 200 32.1 Plus
RapGAP1-PE 850 CG44086-PE 315..485 1580..1749 187 31.2 Plus
RapGAP1-PF 876 CG44086-PF 341..511 1580..1749 187 31.2 Plus
RapGAP1-PI 933 CG44086-PI 398..568 1580..1749 187 31.2 Plus
RapGAP1-PD 933 CG44086-PD 398..568 1580..1749 187 31.2 Plus
RapGAP1-PH 959 CG44086-PH 424..594 1580..1749 187 31.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11523-PA 1904 GI11523-PA 1..1904 1..1847 6708 69.4 Plus
Dmoj\GI24297-PA 2004 GI24297-PA 1657..1837 1589..1775 212 32.1 Plus
Dmoj\GI23099-PA 844 GI23099-PA 303..473 1580..1749 204 34.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25116-PA 1849 GL25116-PA 1..1849 1..1847 7697 81.4 Plus
Dper\GL23891-PA 1998 GL23891-PA 1652..1832 1589..1775 209 31.6 Plus
Dper\GL18868-PA 783 GL18868-PA 322..492 1580..1749 199 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19997-PA 1864 GA19997-PA 1..1864 1..1847 7671 81.7 Plus
Dpse\GA18947-PA 2007 GA18947-PA 1661..1841 1589..1775 209 31.6 Plus
Dpse\GA25836-PA 1029 GA25836-PA 495..665 1580..1749 201 33.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22256-PA 1851 GM22256-PA 1..1851 1..1847 9640 96.7 Plus
Dsec\GM10354-PA 1959 GM10354-PA 1616..1796 1589..1775 208 31.6 Plus
Dsec\GM13529-PA 849 GM13529-PA 315..485 1580..1749 196 32.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14854-PA 1070 GD14854-PA 1..918 1..918 4689 96.3 Plus
Dsim\GD14854-PA 1070 GD14854-PA 891..1070 1668..1847 953 98.9 Plus
Dsim\GD21317-PA 1959 GD21317-PA 1616..1796 1589..1775 209 32.1 Plus
Dsim\GD22487-PA 1051 GD22487-PA 354..524 1580..1749 194 32.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11543-PA 1852 GJ11543-PA 1..1852 1..1847 7133 74.9 Plus
Dvir\GJ23075-PA 2035 GJ23075-PA 1661..1841 1589..1775 213 32.1 Plus
Dvir\GJ23610-PA 893 GJ23610-PA 336..506 1580..1749 206 34.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16938-PA 1845 GK16938-PA 1..1845 1..1847 7330 77.5 Plus
Dwil\GK11379-PA 1984 GK11379-PA 1642..1822 1589..1775 204 31.6 Plus
Dwil\GK24374-PA 839 GK24374-PA 306..476 1580..1749 193 33 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19646-PA 1847 GE19646-PA 1..1847 1..1847 9697 97.3 Plus
Dyak\GE22756-PA 1246 GE22756-PA 1..1246 602..1847 6570 98 Plus
Dyak\GE22755-PA 253 GE22755-PA 1..251 1..251 1334 98 Plus
Dyak\GE23703-PA 1960 GE23703-PA 1617..1797 1589..1775 208 32.1 Plus
Dyak\Rapgap1-PA 851 GE18352-PA 317..487 1580..1749 196 32.4 Plus