Clone LD36183 Report

Search the DGRC for LD36183

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:361
Well:83
Vector:pOT2
Associated Gene/TranscriptPgm-RA
Protein status:LD36183.pep: gold
Preliminary Size:1813
Sequenced Size:1854

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5165 2001-01-01 Release 2 assignment
CG5165 2003-01-01 Sim4 clustering to Release 3
CG5165 2003-02-24 Blastp of sequenced clone
Pgm 2008-04-29 Release 5.5 accounting
Pgm 2008-08-15 Release 5.9 accounting
Pgm 2008-12-18 5.12 accounting

Clone Sequence Records

LD36183.complete Sequence

1854 bp (1854 high quality bases) assembled on 2003-02-24

GenBank Submission: BT010043

> LD36183.complete
CAGCCGGAAAACTCCAGTGACATGTCGCTAACGGTGGAAATTGTTGCCAC
AAAGCCCTATGAGGGTCAGAAGCCAGGAACCAGTGGATTGCGCAAAAAGG
TTAAGGTTTTCACCCAGCCCAACTACACGGAGAACTTTGTCCAGGCCATC
TTGGAGGCAAATGGAGCTGCTCTGGCTGGTTCCACCCTTGTAGTTGGTGG
AGATGGACGTTTCTACTGCAAGGAGGCTGCCGAGCTAATTGTGCGGCTAT
CCGCTGCCAATGGCGTCTCCAAGTTGCTGGTGGGTCAAAACGGCATCCTG
TCCACCCCTGCCGTATCCAGCCTGATCCGTCACAACAAGGCTTTGGGCGG
CATTGTTTTGACTGCATCCCACAATCCCGGTGGTCCAGAGAATGATTTCG
GCATCAAGTTCAACTGCGAGAACGGAGGACCTGCCCCGGATGCGTTCACC
AACCACATCTACAAGATCACCACCGAGATCAAGGAGTACAAGCTGGTGCG
CAACCTGCAGATCGACATCTCAAAGGTTGGTGTAACCTCGTTCGACATCG
CCGGAAAGCCCTTTACCGTGGAGGTGATCGATTCGGTGGCCAACTATGTG
CGCCACATGGAGGAAATCTTCGACTTCGCCAAGCTGAAGGACTTCGTAAG
TGGCAAAGCCACTGGAAAGCCTCTGAAGATGCGCATCGATGCAATGAACG
GAGTAACTGGCTCATATGTGCGCGAGATCTTCCTGAACCGGTTGGGTGCC
ACCGAATCATCGGTGGTCCACACCACTCCACTGCCCGACTTTGGTGGTCT
GCATCCTGACCCAAATCTCACATACGCCAAGGACCTGGTTGACACTGTCG
CCCAGGGAGACTATGACATTGGAGCTGCCTTCGATGGAGATGGTGACCGC
AACATGATCATTGGCAGCAAGGCGTTCTTCGTAACTCCCAGCGACTCGCT
GGCGGTAATTGCCCACTACCTGGAGGCCATACCGTACTTCCAAAAGAATG
GTGTTCAAGGATTCGCCCGCAGTATGCCAACTGCATCCGCTGTGGATTTG
GTGGGCAGAAAGTTGGGCAAGGAAGTGTTTGAGGTTCCCACTGGATGGAA
GTACTTCGGTAATCTCATGGACGCCGGAAGGTTGTGTCTGTGCGGAGAGG
AGAGCTTCGGAACTGGCTCCAATCACATCCGCGAAAAGGATGGCATCTGG
GCGGTTCTCGCTTGGATCTCCGTGATGCAGCACACGGGTAAAGGCATCGA
AGACATCCTGAAGCAGCACTGGTCTGTGTATGGACGCAACTATTTCACCC
GCTACGATTATGAGGAGTGCGCTTCCGATCCTTGCAACGAGATGGTGGCC
ACCATGGAGAAGACCATAACTGCTCCGGAGTTCGTCGGCAAGAGCTATTC
CAGCGGCGGAAAAACCTACAAGGTCAAGGAGGCCGACAACTTCAGCTACA
CAGATCCTGTCGACAAGTCGGTGGCCACGAAACAGGGTCTGCGCATTGTG
TTCGAGGATGGCAGCCGCATTGTGGTGCGCCTCAGTGGAACTGGAAGCTC
GGGAGCAACCGTTCGCTTGTACATTGATTCCTATGAGAAGGAGAATGTTT
TGGGCCAGGCCAGCGTGATGCTGAAACCCTTGATCGACATCGCCCTGGAG
ATCTCTCAGCTGCCCAAGTTCACTGGACGCAACGCTCCAACGGTTATCAC
GTAAAGAGTTCCTGTCAGCGAAGGAACACTGAGATTACCAACCCATCCAA
CTACAATCTCCTCTTGTACCTCAGCGAGGCATTTCCTTGTTATGTTTCGG
ATTTATTAAAGTTTGTGTAGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

LD36183.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pgm.a 2341 Pgm.a 448..2273 1..1826 9130 100 Plus
Pgm-RA 2128 Pgm-RA 235..2060 1..1826 9130 100 Plus
CG12272-RB 3796 CG12272-RB 3757..3796 1826..1787 200 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16116107..16117326 1565..346 6100 100 Minus
chr3L 24539361 chr3L 16115783..16116041 1823..1565 1295 100 Minus
chr3L 24539361 chr3L 16117859..16118108 347..98 1250 100 Minus
chr3L 24539361 chr3L 16118176..16118276 101..1 505 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16126342..16127561 1565..346 6100 100 Minus
3L 28110227 3L 16126015..16126276 1826..1565 1310 100 Minus
3L 28110227 3L 16128094..16128343 347..98 1250 100 Minus
3L 28110227 3L 16128411..16128511 101..1 505 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16119442..16120661 1565..346 6100 100 Minus
3L 28103327 3L 16119115..16119376 1826..1565 1310 100 Minus
3L 28103327 3L 16121194..16121443 347..98 1250 100 Minus
3L 28103327 3L 16121511..16121611 101..1 505 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:37:42 has no hits.

LD36183.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:38:37 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16115783..16116040 1566..1823 100 <- Minus
chr3L 16116107..16117325 347..1565 100 <- Minus
chr3L 16117860..16118106 100..346 100 <- Minus
chr3L 16118178..16118276 1..99 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:41 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 1..1683 22..1704 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:19 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 1..1683 22..1704 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:03 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 1..1683 22..1704 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:43 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 1..1683 22..1704 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:20 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 1..1683 22..1704 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:00:36 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 86..1871 1..1786 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:19 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 86..1871 1..1786 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:03 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 21..1843 1..1823 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:43 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 86..1871 1..1786 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:20 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
Pgm-RA 21..1843 1..1823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:37 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16126018..16126275 1566..1823 100 <- Minus
3L 16126342..16127560 347..1565 100 <- Minus
3L 16128095..16128341 100..346 100 <- Minus
3L 16128413..16128511 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:37 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16126018..16126275 1566..1823 100 <- Minus
3L 16126342..16127560 347..1565 100 <- Minus
3L 16128095..16128341 100..346 100 <- Minus
3L 16128413..16128511 1..99 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:37 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16126018..16126275 1566..1823 100 <- Minus
3L 16126342..16127560 347..1565 100 <- Minus
3L 16128095..16128341 100..346 100 <- Minus
3L 16128413..16128511 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:03 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16119118..16119375 1566..1823 100 <- Minus
arm_3L 16119442..16120660 347..1565 100 <- Minus
arm_3L 16121195..16121441 100..346 100 <- Minus
arm_3L 16121513..16121611 1..99 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:04 Download gff for LD36183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16119118..16119375 1566..1823 100 <- Minus
3L 16119442..16120660 347..1565 100 <- Minus
3L 16121195..16121441 100..346 100 <- Minus
3L 16121513..16121611 1..99 100   Minus

LD36183.hyp Sequence

Translation from 0 to 1703

> LD36183.hyp
QPENSSDMSLTVEIVATKPYEGQKPGTSGLRKKVKVFTQPNYTENFVQAI
LEANGAALAGSTLVVGGDGRFYCKEAAELIVRLSAANGVSKLLVGQNGIL
STPAVSSLIRHNKALGGIVLTASHNPGGPENDFGIKFNCENGGPAPDAFT
NHIYKITTEIKEYKLVRNLQIDISKVGVTSFDIAGKPFTVEVIDSVANYV
RHMEEIFDFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGA
TESSVVHTTPLPDFGGLHPDPNLTYAKDLVDTVAQGDYDIGAAFDGDGDR
NMIIGSKAFFVTPSDSLAVIAHYLEAIPYFQKNGVQGFARSMPTASAVDL
VGRKLGKEVFEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIREKDGIW
AVLAWISVMQHTGKGIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVA
TMEKTITAPEFVGKSYSSGGKTYKVKEADNFSYTDPVDKSVATKQGLRIV
FEDGSRIVVRLSGTGSSGATVRLYIDSYEKENVLGQASVMLKPLIDIALE
ISQLPKFTGRNAPTVIT*

LD36183.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pgm-PA 560 CG5165-PA 1..560 8..567 2901 100 Plus

LD36183.pep Sequence

Translation from 21 to 1703

> LD36183.pep
MSLTVEIVATKPYEGQKPGTSGLRKKVKVFTQPNYTENFVQAILEANGAA
LAGSTLVVGGDGRFYCKEAAELIVRLSAANGVSKLLVGQNGILSTPAVSS
LIRHNKALGGIVLTASHNPGGPENDFGIKFNCENGGPAPDAFTNHIYKIT
TEIKEYKLVRNLQIDISKVGVTSFDIAGKPFTVEVIDSVANYVRHMEEIF
DFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGATESSVVH
TTPLPDFGGLHPDPNLTYAKDLVDTVAQGDYDIGAAFDGDGDRNMIIGSK
AFFVTPSDSLAVIAHYLEAIPYFQKNGVQGFARSMPTASAVDLVGRKLGK
EVFEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIREKDGIWAVLAWIS
VMQHTGKGIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTIT
APEFVGKSYSSGGKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRI
VVRLSGTGSSGATVRLYIDSYEKENVLGQASVMLKPLIDIALEISQLPKF
TGRNAPTVIT*

LD36183.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10321-PA 560 GF10321-PA 1..560 1..560 2858 95.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13495-PA 560 GG13495-PA 1..560 1..560 2963 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15036-PA 562 GH15036-PA 7..562 5..560 2736 91 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Pgm1-PA 560 CG5165-PA 1..560 1..560 2901 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16688-PA 560 GI16688-PA 1..560 1..560 2749 90.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18035-PA 560 GL18035-PA 1..560 1..560 2790 92.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18703-PA 560 GA18703-PA 1..560 1..560 2794 92.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24444-PA 492 GM24444-PA 1..325 1..325 1706 99.1 Plus
Dsec\GM24444-PA 492 GM24444-PA 327..492 398..560 833 95.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12940-PA 560 GJ12940-PA 1..560 1..560 2768 91.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17336-PA 560 GK17336-PA 1..560 1..560 2825 93.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Pgm-PA 560 GE22586-PA 1..560 1..560 2947 98.6 Plus