BDGP Sequence Production Resources |
Search the DGRC for LD36273
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 362 |
Well: | 73 |
Vector: | pOT2 |
Associated Gene/Transcript | sni-RA |
Protein status: | LD36273.pep: gold |
Preliminary Size: | 1249 |
Sequenced Size: | 1070 |
Gene | Date | Evidence |
---|---|---|
CG10964 | 2001-01-01 | Release 2 assignment |
CG10964 | 2002-06-04 | Blastp of sequenced clone |
CG10964 | 2003-01-01 | Sim4 clustering to Release 3 |
sni | 2008-04-29 | Release 5.5 accounting |
sni | 2008-08-15 | Release 5.9 accounting |
sni | 2008-12-18 | 5.12 accounting |
1070 bp (1070 high quality bases) assembled on 2002-06-04
GenBank Submission: AY118557
> LD36273.complete AACGAAACAGCCGGCCGTCAAAATTTTTCCTAACATTTCACTATTTTCAC GCTTGTGTTACGGCAATAAAGTCGATTGATAAGCACGGAAAGATCTGGCT GCGGGTCTGGTGAAATCCACAGAACACACGGAACCCGTATAGTAGTGCCG CCCTTTATTGGTTTTATCTCAAGTACGACGCGATAAGATTTCGAGCAACT CGATCGCGGATCTTCGGAAAAAAAAAACATGAACTCCATCCTGATAACCG GCTGCAATCGAGGATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTT CCCCAGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGC AAAGGAGCTGGAGGATCTAGCCAAGAACCACTCGAACATACACATACTTG AGATTGATTTGAGAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATC GAGGGCGTGACCAAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGG CATAGCGCCCAAATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGC TCGACACCTTGCAGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCG TGTCTGCCGCTCCTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGAT GGGCGTGGGCCGTGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCA TCCAGGGCAACACGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCG GCCTTGAATGCGGCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACG CATCATGTGCGTCAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTG GCTCCAGTGCCCCCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAG ACCATCAGCAAGCTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGA CGGCACTCCGCTGGCCTGGTAAACGATGACAGCGGTTAGTTTACCTGCAT TTTGTTTCTGTCTGTTAATTGTTGTTGAATAAACTGGACTCCTAAAGTCA AAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sni-RA | 1238 | sni-RA | 160..1214 | 1..1055 | 5260 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8133314..8133957 | 1049..406 | 3220 | 100 | Minus |
chrX | 22417052 | chrX | 8134763..8135117 | 355..1 | 1775 | 100 | Minus |
chrX | 22417052 | chrX | 8134018..8134071 | 406..353 | 270 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8133314..8133956 | 407..1049 | 100 | <- | Minus |
chrX | 8134018..8134069 | 355..406 | 100 | <- | Minus |
chrX | 8134764..8135117 | 1..354 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 1..744 | 229..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 1..744 | 229..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 1..744 | 229..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 1..744 | 229..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 1..744 | 229..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 1..1049 | 1..1049 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 1..1049 | 1..1049 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 57..1105 | 1..1049 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 1..1049 | 1..1049 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sni-RA | 57..1105 | 1..1049 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8241501..8242143 | 407..1049 | 100 | <- | Minus |
X | 8242205..8242256 | 355..406 | 100 | <- | Minus |
X | 8242951..8243304 | 1..354 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8241501..8242143 | 407..1049 | 100 | <- | Minus |
X | 8242205..8242256 | 355..406 | 100 | <- | Minus |
X | 8242951..8243304 | 1..354 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8241501..8242143 | 407..1049 | 100 | <- | Minus |
X | 8242205..8242256 | 355..406 | 100 | <- | Minus |
X | 8242951..8243304 | 1..354 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8135534..8136176 | 407..1049 | 100 | <- | Minus |
arm_X | 8136238..8136289 | 355..406 | 100 | <- | Minus |
arm_X | 8136984..8137337 | 1..354 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8251049..8251402 | 1..354 | 100 | Minus | |
X | 8249599..8250241 | 407..1049 | 100 | <- | Minus |
X | 8250303..8250354 | 355..406 | 100 | <- | Minus |
Translation from 228 to 971
> LD36273.hyp MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARIT AVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN MSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG WVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sni-PB | 247 | CG10964-PB | 1..247 | 1..247 | 1264 | 100 | Plus |
sni-PA | 247 | CG10964-PA | 1..247 | 1..247 | 1264 | 100 | Plus |
CG7322-PC | 242 | CG7322-PC | 10..188 | 4..210 | 166 | 30.4 | Plus |
CG7322-PB | 242 | CG7322-PB | 10..188 | 4..210 | 166 | 30.4 | Plus |
CG7322-PA | 242 | CG7322-PA | 10..188 | 4..210 | 166 | 30.4 | Plus |
Translation from 228 to 971
> LD36273.pep MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARIT AVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN MSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG WVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19520-PA | 247 | GF19520-PA | 1..247 | 1..247 | 1167 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17975-PA | 247 | GG17975-PA | 1..247 | 1..247 | 1292 | 98.4 | Plus |
Dere\GG18088-PA | 242 | GG18088-PA | 10..186 | 4..208 | 156 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11969-PA | 247 | GH11969-PA | 1..247 | 1..247 | 980 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sni-PB | 247 | CG10964-PB | 1..247 | 1..247 | 1264 | 100 | Plus |
sni-PA | 247 | CG10964-PA | 1..247 | 1..247 | 1264 | 100 | Plus |
CG7322-PC | 242 | CG7322-PC | 10..188 | 4..210 | 166 | 30.4 | Plus |
CG7322-PB | 242 | CG7322-PB | 10..188 | 4..210 | 166 | 30.4 | Plus |
CG7322-PA | 242 | CG7322-PA | 10..188 | 4..210 | 166 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14710-PA | 247 | GI14710-PA | 1..247 | 1..247 | 993 | 73.7 | Plus |
Dmoj\GI21510-PA | 242 | GI21510-PA | 10..185 | 4..207 | 142 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14172-PA | 247 | GL14172-PA | 1..247 | 1..247 | 1088 | 80.6 | Plus |
Dper\GL21318-PA | 350 | GL21318-PA | 118..306 | 4..213 | 157 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10672-PA | 247 | GA10672-PA | 1..247 | 1..247 | 1086 | 80.6 | Plus |
Dpse\GA20258-PA | 242 | GA20258-PA | 10..198 | 4..213 | 159 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11196-PA | 129 | GM11196-PA | 1..105 | 1..105 | 551 | 99 | Plus |
Dsec\GM11197-PA | 97 | GM11197-PA | 1..97 | 151..247 | 505 | 97.9 | Plus |
Dsec\GM22780-PA | 242 | GM22780-PA | 10..185 | 4..207 | 157 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16123-PA | 247 | GD16123-PA | 1..247 | 1..247 | 1305 | 99.6 | Plus |
Dsim\GD24467-PA | 242 | GD24467-PA | 10..185 | 4..207 | 161 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16775-PA | 247 | GJ16775-PA | 1..247 | 1..247 | 1005 | 76.1 | Plus |
Dvir\GJ19048-PA | 242 | GJ19048-PA | 10..185 | 4..207 | 142 | 28.9 | Plus |