Clone LD36273 Report

Search the DGRC for LD36273

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:362
Well:73
Vector:pOT2
Associated Gene/Transcriptsni-RA
Protein status:LD36273.pep: gold
Preliminary Size:1249
Sequenced Size:1070

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10964 2001-01-01 Release 2 assignment
CG10964 2002-06-04 Blastp of sequenced clone
CG10964 2003-01-01 Sim4 clustering to Release 3
sni 2008-04-29 Release 5.5 accounting
sni 2008-08-15 Release 5.9 accounting
sni 2008-12-18 5.12 accounting

Clone Sequence Records

LD36273.complete Sequence

1070 bp (1070 high quality bases) assembled on 2002-06-04

GenBank Submission: AY118557

> LD36273.complete
AACGAAACAGCCGGCCGTCAAAATTTTTCCTAACATTTCACTATTTTCAC
GCTTGTGTTACGGCAATAAAGTCGATTGATAAGCACGGAAAGATCTGGCT
GCGGGTCTGGTGAAATCCACAGAACACACGGAACCCGTATAGTAGTGCCG
CCCTTTATTGGTTTTATCTCAAGTACGACGCGATAAGATTTCGAGCAACT
CGATCGCGGATCTTCGGAAAAAAAAAACATGAACTCCATCCTGATAACCG
GCTGCAATCGAGGATTGGGTCTGGGCCTGGTCAAGGCGCTGCTCAATCTT
CCCCAGCCGCCGCAGCATCTATTTACCACCTGCCGGAATCGCGAGCAGGC
AAAGGAGCTGGAGGATCTAGCCAAGAACCACTCGAACATACACATACTTG
AGATTGATTTGAGAAATTTCGATGCCTATGACAAGCTAGTCGCCGACATC
GAGGGCGTGACCAAGGACCAAGGCCTCAATGTGCTCTTCAACAATGCCGG
CATAGCGCCCAAATCGGCCAGGATAACGGCCGTTCGATCGCAGGAGCTGC
TCGACACCTTGCAGACCAACACGGTTGTGCCCATCATGCTGGCCAAGGCG
TGTCTGCCGCTCCTTAAGAAGGCAGCCAAAGCGAACGAATCCCAGCCGAT
GGGCGTGGGCCGTGCCGCCATTATTAACATGTCCTCGATCCTTGGCTCCA
TCCAGGGCAACACGGACGGCGGAATGTACGCCTATCGCACCTCTAAGTCG
GCCTTGAATGCGGCCACCAAGTCGTTGAGCGTGGATCTGTATCCGCAACG
CATCATGTGCGTCAGTCTGCATCCTGGCTGGGTGAAAACCGACATGGGTG
GCTCCAGTGCCCCCTTGGACGTGCCCACCAGCACGGGACAAATTGTGCAG
ACCATCAGCAAGCTGGGCGAGAAACAGAACGGCGGTTTTGTCAACTACGA
CGGCACTCCGCTGGCCTGGTAAACGATGACAGCGGTTAGTTTACCTGCAT
TTTGTTTCTGTCTGTTAATTGTTGTTGAATAAACTGGACTCCTAAAGTCA
AAAAAAAAAAAAAAAAAAAA

LD36273.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
sni-RA 1238 sni-RA 160..1214 1..1055 5260 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8133314..8133957 1049..406 3220 100 Minus
chrX 22417052 chrX 8134763..8135117 355..1 1775 100 Minus
chrX 22417052 chrX 8134018..8134071 406..353 270 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8241495..8242144 1055..406 3235 99.8 Minus
X 23542271 X 8242950..8243304 355..1 1775 100 Minus
X 23542271 X 8242205..8242258 406..353 270 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8249593..8250242 1055..406 3235 99.8 Minus
X 23527363 X 8251048..8251402 355..1 1775 100 Minus
X 23527363 X 8250303..8250356 406..353 270 100 Minus
Blast to na_te.dros performed on 2019-03-15 13:44:23 has no hits.

LD36273.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:45:26 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8133314..8133956 407..1049 100 <- Minus
chrX 8134018..8134069 355..406 100 <- Minus
chrX 8134764..8135117 1..354 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:46 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..744 229..972 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:32:18 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..744 229..972 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:11:13 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..744 229..972 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:22:28 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..744 229..972 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:39:55 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..744 229..972 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:02:41 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..1049 1..1049 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:32:18 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..1049 1..1049 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:11:13 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 57..1105 1..1049 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:22:29 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 1..1049 1..1049 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:39:55 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
sni-RA 57..1105 1..1049 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:26 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
X 8241501..8242143 407..1049 100 <- Minus
X 8242205..8242256 355..406 100 <- Minus
X 8242951..8243304 1..354 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:26 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
X 8241501..8242143 407..1049 100 <- Minus
X 8242205..8242256 355..406 100 <- Minus
X 8242951..8243304 1..354 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:26 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
X 8241501..8242143 407..1049 100 <- Minus
X 8242205..8242256 355..406 100 <- Minus
X 8242951..8243304 1..354 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:11:13 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8135534..8136176 407..1049 100 <- Minus
arm_X 8136238..8136289 355..406 100 <- Minus
arm_X 8136984..8137337 1..354 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:56:16 Download gff for LD36273.complete
Subject Subject Range Query Range Percent Splice Strand
X 8251049..8251402 1..354 100   Minus
X 8249599..8250241 407..1049 100 <- Minus
X 8250303..8250354 355..406 100 <- Minus

LD36273.hyp Sequence

Translation from 228 to 971

> LD36273.hyp
MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN
HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARIT
AVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN
MSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG
WVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAW*

LD36273.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
sni-PB 247 CG10964-PB 1..247 1..247 1264 100 Plus
sni-PA 247 CG10964-PA 1..247 1..247 1264 100 Plus
CG7322-PC 242 CG7322-PC 10..188 4..210 166 30.4 Plus
CG7322-PB 242 CG7322-PB 10..188 4..210 166 30.4 Plus
CG7322-PA 242 CG7322-PA 10..188 4..210 166 30.4 Plus

LD36273.pep Sequence

Translation from 228 to 971

> LD36273.pep
MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN
HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARIT
AVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIIN
MSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG
WVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLAW*

LD36273.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19520-PA 247 GF19520-PA 1..247 1..247 1167 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17975-PA 247 GG17975-PA 1..247 1..247 1292 98.4 Plus
Dere\GG18088-PA 242 GG18088-PA 10..186 4..208 156 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11969-PA 247 GH11969-PA 1..247 1..247 980 72.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
sni-PB 247 CG10964-PB 1..247 1..247 1264 100 Plus
sni-PA 247 CG10964-PA 1..247 1..247 1264 100 Plus
CG7322-PC 242 CG7322-PC 10..188 4..210 166 30.4 Plus
CG7322-PB 242 CG7322-PB 10..188 4..210 166 30.4 Plus
CG7322-PA 242 CG7322-PA 10..188 4..210 166 30.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14710-PA 247 GI14710-PA 1..247 1..247 993 73.7 Plus
Dmoj\GI21510-PA 242 GI21510-PA 10..185 4..207 142 29.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14172-PA 247 GL14172-PA 1..247 1..247 1088 80.6 Plus
Dper\GL21318-PA 350 GL21318-PA 118..306 4..213 157 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10672-PA 247 GA10672-PA 1..247 1..247 1086 80.6 Plus
Dpse\GA20258-PA 242 GA20258-PA 10..198 4..213 159 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11196-PA 129 GM11196-PA 1..105 1..105 551 99 Plus
Dsec\GM11197-PA 97 GM11197-PA 1..97 151..247 505 97.9 Plus
Dsec\GM22780-PA 242 GM22780-PA 10..185 4..207 157 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16123-PA 247 GD16123-PA 1..247 1..247 1305 99.6 Plus
Dsim\GD24467-PA 242 GD24467-PA 10..185 4..207 161 30.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16775-PA 247 GJ16775-PA 1..247 1..247 1005 76.1 Plus
Dvir\GJ19048-PA 242 GJ19048-PA 10..185 4..207 142 28.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10240-PA 247 GK10240-PA 1..247 1..247 1090 81 Plus
Dwil\GK20088-PA 242 GK20088-PA 10..185 4..207 157 28.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17468-PA 247 GE17468-PA 1..247 1..247 1297 98.4 Plus
Dyak\GE15485-PA 242 GE15485-PA 10..185 4..207 169 31.4 Plus