Clone LD36337 Report

Search the DGRC for LD36337

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:363
Well:37
Vector:pOT2
Associated Gene/TranscriptTis11-RA
Protein status:LD36337.pep: gold
Sequenced Size:2158

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Tis11 2008-04-29 Picked prior to 5.5
Tis11 2008-08-15 Release 5.9 accounting
Tis11 2008-12-18 5.12 accounting

Clone Sequence Records

LD36337.complete Sequence

2158 bp assembled on 2008-05-22

GenBank Submission: BT032844

> LD36337.complete
CGAGTGTAAGGTTCGATTCCGATCTGGCTGGTTGTCTGACGGACGTGCTG
CGTCTATTTTGTTGTGTTTTTTTGCGAACGAGCGAAGAGCGACAGGACCT
CTGCGCCCGTATTCAAACTGATTTTTTTTTATTGTTGCAATGCAATATTC
GCGGAACGAATAACAACAACATACATAACTCAATATTCAAGTGCAAAGCA
AATACAAATCAAACACAAAAGAAAAAGCAACGAAATAAAGATATATAGAA
AAGAAAAACAAAACGAAAAAATTCGCACATTTTTTCTGTCTTGTCCAGTG
GAAAATACAACAAATAAACAACAACGGCTAAATCAAGTTAACAATCTGTT
CAAAACCAATCAACAAAATGTCTGCTGATATTCTGCAGAAATCAAGAGAG
CAGGATGATTCGCACTACTTCGAGCGTGGCGATATATCCAAATACGTAAC
GATGAACGATCACTTGGGTGATTTCGATTGCAACGAGGTGCGCAAGGAAA
TAAGGATGCTGCTCGCCCACGGCGCCAACTTGGATCAGCAGCACCAGCAG
CAGCCACATCGCCACCATGGCGGTCTCACACGAACCATTTCACAGCCGGC
CCAGCTCATCCAGCAGCAGCAGCAGCAACACCAACAGCAGCAGCAGCAGC
AGCCAGCTGTTGCCAGTCTGGTGACCATCACCGAGAACCTGGGCAACATG
AACCTGCACCGAAAGCTGGAGCGAACCCAATCGGAGCCACTGCCGCCACA
GCAGCCGATGAACACATCCAGATACAAGACCGAGCTGTGCCGCCCGTTCG
AGGAGGCCGGAGAATGCAAGTACGGCGAGAAGTGCCAGTTCGCCCATGGA
AGCCATGAGTTGCGAAACGTGCACCGTCATCCCAAGTACAAGACGGAATA
CTGCCGCACCTTCCACAGCGTGGGCTTCTGTCCCTACGGACCGCGCTGTC
ACTTTGTTCACAATGCGGACGAGGCCCGCGCCCAACAGGCGGCCCAGGCA
GCCAAGTCCTCCACCCAGTCGCAGTCGCAGTCGCAGCAGTCGTCGTCGCA
GAACTTCTCGCCGAAGAGCAACCAGAGCAGCAATCAAAGTAGCAACAGTA
GCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGTGGCGGCGGCAACAGCATC
AACAACAACAACGGTAGCCAATTCTATCTGCCGCTAAGCCCACCGCTGAG
CATGAGCACAGGATCGGACCGGGAATCGCCCACCGGATCACTGTCCCTCA
GCCCCACCAACTCGTTGACCAGCTTCCCGTTCCACGATGCCCTGCAGCAT
GGATATTTGGCATCGAATGGCGCCAAGAGCAACAGTTCCGCCTCGTCCAC
ATCATCGGCCTCTGGAATGGGTCTGGGCATGAGCATGGGCATCGGCCAGG
GCATGATCATCGGTCAGGGCTTGGGAATGGGACATCATGGACCGGCTACA
CCGCCGGAGAGCCCCAATGTGCCCATATCGCCAGTGCATACACCGCCACC
GTACGATGTGGTGGTCAGTGGATCTGGAGCGGGCAACAATAGCGTTGGCA
GCAAGCAGCTCCTGCAGAAGAGCGTCAGCACACCGATGCAGCAGGAGGAT
ACGCCCAGGTTGCCGGTTTTCAACCGTCTCAGCTCCGGTGTGGAGGCCTA
CCAGCAGCAGTCCAATTTGGGACTCTAAACGCGTGGCAGTCTGCGAAACA
AAATTGAATTGAAACACCATCCAGCATCCAACTCACGCCCATCCAAGCAT
CCCTCCATCAACAAACCAGCATCCTTGACAAAATCTCAGTAACGACCAAA
CCATGGAAACTGAAAACAAAACTACTCTCGCAGTCCAATTTGAAACGCAA
ATATGCCAAGGCAAATGGATTTCCGGTGGCGTAACTTCGTTGCAGAATAA
GTGTATATCAAGTATACGCCAAACACAGACACCCCTTAATTATGAACCGA
TCCTTGATATCAATTCTCTCATTGCTGTGACAGTCAAACGTAATCGTTAT
ACAATAATCGTTATATGAGAAGGACCGAATTACGGACTACTACGGGACAA
TTAGTTAGATAGATACGTAAATGACAAACAAACAATCCAAGCAAACGATG
ATCTTAAACTATAACTAAATACTAAAAACTAAAAACTAACAAAAAAAAAA
AAAAAAAA

LD36337.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tis11.k 3468 Tis11.k 79..2236 1..2158 10760 99.9 Plus
Tis11.f 3336 Tis11.f 79..2236 1..2158 10760 99.9 Plus
Tis11.l 2590 Tis11.l 79..2236 1..2158 10760 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12569243..12570624 759..2140 6805 99.5 Plus
chrX 22417052 chrX 12551455..12551788 118..451 1670 100 Plus
chrX 22417052 chrX 12568655..12568978 451..771 1510 98.5 Plus
chrX 22417052 chrX 12550353..12550469 1..117 585 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CR33963-RA 1171 CR33963-RA 1073..1171 118..216 495 100 Plus
CR33963-RA 1171 CR33963-RA 1..87 31..117 435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12678321..12679720 759..2158 6940 99.7 Plus
X 23542271 X 12660534..12660867 118..451 1670 100 Plus
X 23542271 X 12677736..12678056 451..771 1605 100 Plus
X 23542271 X 12659432..12659548 1..117 585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12686419..12687818 759..2158 6940 99.7 Plus
X 23527363 X 12668632..12668965 118..451 1670 100 Plus
X 23527363 X 12685834..12686154 451..771 1605 100 Plus
X 23527363 X 12667530..12667646 1..117 585 100 Plus
Blast to na_te.dros performed 2019-03-16 11:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2959 532..1216 277 54 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2408 1068..1170 219 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2430 1064..1162 216 68.7 Plus
roo 9092 roo DM_ROO 9092bp 1059..1145 1076..1162 210 71.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2486 1034..1170 209 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2761..2834 1097..1170 172 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2828..2996 998..1171 155 58.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1163 537..644 154 65.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3233..3371 1068..1210 146 60.7 Plus

LD36337.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:39:00 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12550353..12550469 1..117 100 -> Plus
chrX 12551455..12551531 118..194 100 == Plus
chrX 12551608..12551788 271..451 100 -> Plus
chrX 12568656..12568978 452..771 86 -> Plus
chrX 12569256..12569550 772..1066 99 == Plus
chrX 12569659..12570605 1175..2121 99 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:48:29 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 1..1311 368..1678 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:37:39 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 1..1311 368..1678 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:05:54 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 1..1311 368..1678 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:43:19 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 1..1311 368..1678 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:09 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 1..1311 368..1678 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:31:11 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
CR33963-RA 1..87 31..117 100 -> Plus
CR33963-RA 1073..1171 118..216 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:28 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 71..2194 1..2124 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:37:39 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 71..2194 1..2124 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:05:54 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 18..2157 1..2140 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:43:19 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 71..2194 1..2124 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:09 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
Tis11-RA 18..2157 1..2140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:00 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
X 12659432..12659548 1..117 100 -> Plus
X 12660534..12660867 118..451 100 -> Plus
X 12677737..12678056 452..771 100 -> Plus
X 12678334..12679702 772..2140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:00 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
X 12659432..12659548 1..117 100 -> Plus
X 12660534..12660867 118..451 100 -> Plus
X 12677737..12678056 452..771 100 -> Plus
X 12678334..12679702 772..2140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:00 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
X 12659432..12659548 1..117 100 -> Plus
X 12660534..12660867 118..451 100 -> Plus
X 12677737..12678056 452..771 100 -> Plus
X 12678334..12679702 772..2140 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:05:54 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12553465..12553581 1..117 100 -> Plus
arm_X 12554567..12554900 118..451 100 -> Plus
arm_X 12571770..12572089 452..771 100 -> Plus
arm_X 12572367..12573735 772..2140 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:20:33 Download gff for LD36337.complete
Subject Subject Range Query Range Percent Splice Strand
X 12668632..12668965 118..451 100 -> Plus
X 12685835..12686154 452..771 100 -> Plus
X 12686432..12687800 772..2140 100   Plus
X 12667530..12667646 1..117 100 -> Plus

LD36337.pep Sequence

Translation from 367 to 1677

> LD36337.pep
MSADILQKSREQDDSHYFERGDISKYVTMNDHLGDFDCNEVRKEIRMLLA
HGANLDQQHQQQPHRHHGGLTRTISQPAQLIQQQQQQHQQQQQQQPAVAS
LVTITENLGNMNLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGEC
KYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNA
DEARAQQAAQAAKSSTQSQSQSQQSSSQNFSPKSNQSSNQSSNSSSSSSS
SGGGGGGGNSINNNNGSQFYLPLSPPLSMSTGSDRESPTGSLSLSPTNSL
TSFPFHDALQHGYLASNGAKSNSSASSTSSASGMGLGMSMGIGQGMIIGQ
GLGMGHHGPATPPESPNVPISPVHTPPPYDVVVSGSGAGNNSVGSKQLLQ
KSVSTPMQQEDTPRLPVFNRLSSGVEAYQQQSNLGL*

LD36337.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21384-PA 470 GF21384-PA 1..470 1..436 978 58.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17735-PA 457 GG17735-PA 1..457 1..436 1528 83 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17894-PA 425 GH17894-PA 32..382 68..424 877 56.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Tis11-PD 436 CG4070-PD 1..436 1..436 2299 100 Plus
Tis11-PC 436 CG4070-PC 1..436 1..436 2299 100 Plus
Tis11-PA 436 CG4070-PA 1..436 1..436 2299 100 Plus
Smr-PF 3601 CG4013-PF 190..482 51..343 165 25.5 Plus
Smr-PE 3601 CG4013-PE 190..482 51..343 165 25.5 Plus
Smr-PD 3601 CG4013-PD 190..482 51..343 165 25.5 Plus
Smr-PG 3607 CG4013-PG 196..488 51..343 165 25.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21684-PA 411 GI21684-PA 1..313 1..306 745 55.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13141-PA 446 GL13141-PA 1..439 1..431 1010 57.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17935-PA 456 GA17935-PA 1..449 1..431 1023 55.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11580-PA 431 GM11580-PA 1..431 1..436 1654 93.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15863-PA 433 GJ15863-PA 45..411 68..427 900 59.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25600-PA 451 GK25600-PA 1..451 1..436 974 56.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17025-PA 448 GE17025-PA 1..448 1..436 1548 85.3 Plus

LD36337.hyp Sequence

Translation from 367 to 1677

> LD36337.hyp
MSADILQKSREQDDSHYFERGDISKYVTMNDHLGDFDCNEVRKEIRMLLA
HGANLDQQHQQQPHRHHGGLTRTISQPAQLIQQQQQQHQQQQQQQPAVAS
LVTITENLGNMNLHRKLERTQSEPLPPQQPMNTSRYKTELCRPFEEAGEC
KYGEKCQFAHGSHELRNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNA
DEARAQQAAQAAKSSTQSQSQSQQSSSQNFSPKSNQSSNQSSNSSSSSSS
SGGGGGGGNSINNNNGSQFYLPLSPPLSMSTGSDRESPTGSLSLSPTNSL
TSFPFHDALQHGYLASNGAKSNSSASSTSSASGMGLGMSMGIGQGMIIGQ
GLGMGHHGPATPPESPNVPISPVHTPPPYDVVVSGSGAGNNSVGSKQLLQ
KSVSTPMQQEDTPRLPVFNRLSSGVEAYQQQSNLGL*

LD36337.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Tis11-PD 436 CG4070-PD 1..436 1..436 2299 100 Plus
Tis11-PC 436 CG4070-PC 1..436 1..436 2299 100 Plus
Tis11-PA 436 CG4070-PA 1..436 1..436 2299 100 Plus
Smr-PF 3601 CG4013-PF 190..482 51..343 165 25.5 Plus
Smr-PE 3601 CG4013-PE 190..482 51..343 165 25.5 Plus