Clone LD36412 Report

Search the DGRC for LD36412

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:364
Well:12
Vector:pOT2
Associated Gene/TranscriptCG5482-RA
Protein status:LD36412.pep: gold
Preliminary Size:1684
Sequenced Size:1635

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5482 2001-01-01 Release 2 assignment
CG5482 2001-09-19 Blastp of sequenced clone
CG5482 2003-01-01 Sim4 clustering to Release 3
CG5482 2008-04-29 Release 5.5 accounting
CG5482 2008-08-15 Release 5.9 accounting
CG5482 2008-12-18 5.12 accounting

Clone Sequence Records

LD36412.complete Sequence

1635 bp (1635 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058659

> LD36412.complete
TCACACTGGCTAGCTGGCAGAAGTCCGTAAAATTATTTTTCGTTTCCCAG
TAACTTTCTTGTCGCATTTTGCTTTTGAAATCAAATTAAATCATTTTTTT
TACCAAAATCCGATATCACAATCAGATACTGCTGTAATTATGGATACGGA
GAAGTCTAGCAGCAGCTCCTTCGAGGACCTGACCAACGCCGAGGACACCA
AAGACATTCGCAAGGTGGCAGCGGAGGAGGCAGCCTCCGGAGATGGCGCA
CCCCCGGCATCCGTTTCTGGAGACGGACAGAAGGCGGAGGAGGAGGATGC
AGAGGAGGAATGTGATATACTGGGTAACAAGCAGCTGATTAAGCGCACCA
TCAAAAAGGCACCGCAAGACTCGTTTAGGCGTCCGATTCGCGGCGAATTG
GTCACCGTGAACTTCACTGGAAAACTGGACAACGGCACGGTGGTCGAGAA
CGAGTTGAACTTCCAGTGTCACGTGGGAGACTACGAGGTTATCCAAGGAT
TAGATATGGTGTTGCCCATGCTGCAGGTCGGCGAAGTGTCCCAAGTCAGC
GTGGATTCCCGCTTCGGCTACGGCTCCCTAGGACTGAAAAAAGAGGGTGA
ATCCGAGTACCTGGTACCACCCGATGCGCACCTTACCTACGAAATAGAGC
TTCTGGATATCAAATACGAAGAATTTGCGGACCTTAAGAGCTTTGAAATA
CTGCGCAAATATGGTACGCGCAAGAAAGAACGTGCCAATTTCTTTTACAA
ACGCTCGGAGTTCACAACCGCCATTCACCTGTACAGACGTGCCCTCGACT
TTCTGGACAATCGTGATGGGGATCCGGACTCCGAGTTCGACAAGGAAGAC
TTGGAGCTCTCGAACAGTGACACGCAGACCCTGCTAGAGGATCGGTTGAT
CGTTTACAATAACTTGGCAATGACTCAAATCAAGATTGCCGCTTATGACG
CAGCTCTGCAGTCCGTGGAGCATGTGCTGCGGTGCCAGCCAAATAACTCC
AAAGCCTTGTATCGCAAAGGAAGAATATTGGAGGGCAAAGCGGACACCCA
GGGTGCTATTAAGCTACTGCAAAAAGTGGCTACTCTCGAACCCGAAAATC
GAGCCGTTCAATCGGATTTGGCCAGACTTTTCATCAAGGCTCGTCGTGAG
GAGCACAACGAAAAGGAGATGTATCAAAAGATGCTGGGCCAGGCCAAAAA
AATGGAGCAGAATACTGCCACCAGGCAAAAGCAGCCGCTTGTCGACAATT
CCAAGCTGAAGCTGCTTGGCTATCTAATGGGTACGATATTAATTGGAGTG
GCTGGCGTCGCTATTTATCGTTACAAGTACTAAGGACAAGCATTGCACAC
GAACTACTGGTTATTTTAAGCAATTGAAATGCATTTTTTAAGTATATATA
GAAGGCAAAATTATGAATGTTGGAAAGTCGCAGTTGCTTATTATGATGAT
ATGGCTCTCGTTGTACATTTAATGCTATGCACACTTCACAATAGTATGTA
TCTTTCAAATAGTATGGTTTTGGATATCGTACATATAATGTTAAAGCTTA
AGTTTAATCAACTACATTCTGTCAGACAAGTAACGGGAATTGTTAAAATA
AACACAATATTCTCATCAAAAAAAAAAAAAAAAAA

LD36412.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5482-RA 2167 CG5482-RA 156..1775 1..1618 8045 99.8 Plus
CG5482.a 1606 CG5482.a 64..1556 126..1618 7465 100 Plus
CG5482.d 1689 CG5482.d 155..1639 134..1618 7425 100 Plus
CG5482.d 1689 CG5482.d 15..149 1..133 620 98.5 Plus
CG5482.a 1606 CG5482.a 15..63 1..49 245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14518256..14518753 631..134 2475 99.8 Minus
chr2R 21145070 chr2R 14517037..14517400 1617..1254 1820 100 Minus
chr2R 21145070 chr2R 14517752..14518062 1024..714 1525 99.4 Minus
chr2R 21145070 chr2R 14517456..14517690 1259..1025 1085 97.4 Minus
chr2R 21145070 chr2R 14518869..14519008 137..1 620 97.9 Minus
chr2R 21145070 chr2R 14518119..14518201 714..632 385 97.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18631133..18631630 631..134 2490 100 Minus
2R 25286936 2R 18629914..18630278 1618..1254 1825 100 Minus
2R 25286936 2R 18630629..18630939 1024..714 1555 100 Minus
2R 25286936 2R 18630334..18630568 1259..1025 1160 99.6 Minus
2R 25286936 2R 18631746..18631884 137..1 630 98.6 Minus
2R 25286936 2R 18630996..18631078 714..632 415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18632332..18632829 631..134 2490 100 Minus
2R 25260384 2R 18631113..18631477 1618..1254 1825 100 Minus
2R 25260384 2R 18631828..18632138 1024..714 1555 100 Minus
2R 25260384 2R 18631533..18631767 1259..1025 1160 99.5 Minus
2R 25260384 2R 18632945..18633083 137..1 640 98.5 Minus
2R 25260384 2R 18632195..18632277 714..632 415 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:05:23 has no hits.

LD36412.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:06:32 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14517037..14517398 1256..1617 100 <- Minus
chr2R 14517460..14517690 1025..1255 97 <- Minus
chr2R 14517752..14518061 715..1024 99 <- Minus
chr2R 14518119..14518201 632..714 97 <- Minus
chr2R 14518256..14518753 134..631 99 <- Minus
chr2R 14518873..14519008 1..133 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:18:58 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 1..1194 140..1333 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:25 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 1..1194 140..1333 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:52:23 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 1..1194 140..1333 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:49 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 1..1194 140..1333 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:26:29 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RB 1..1194 140..1333 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:51 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 15..1633 1..1617 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:25 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 15..1633 1..1617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:23 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 19..1637 1..1617 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:49 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 15..1633 1..1617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:26:29 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
CG5482-RA 19..1637 1..1617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:32 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18629915..18630276 1256..1617 100 <- Minus
2R 18630338..18630568 1025..1255 100 <- Minus
2R 18630629..18630938 715..1024 100 <- Minus
2R 18630996..18631078 632..714 100 <- Minus
2R 18631133..18631630 134..631 100 <- Minus
2R 18631750..18631884 1..133 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:32 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18629915..18630276 1256..1617 100 <- Minus
2R 18630338..18630568 1025..1255 100 <- Minus
2R 18630629..18630938 715..1024 100 <- Minus
2R 18630996..18631078 632..714 100 <- Minus
2R 18631133..18631630 134..631 100 <- Minus
2R 18631750..18631884 1..133 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:32 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18629915..18630276 1256..1617 100 <- Minus
2R 18630338..18630568 1025..1255 100 <- Minus
2R 18630629..18630938 715..1024 100 <- Minus
2R 18630996..18631078 632..714 100 <- Minus
2R 18631133..18631630 134..631 100 <- Minus
2R 18631750..18631884 1..133 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:23 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14517420..14517781 1256..1617 100 <- Minus
arm_2R 14517843..14518073 1025..1255 100 <- Minus
arm_2R 14518134..14518443 715..1024 100 <- Minus
arm_2R 14518501..14518583 632..714 100 <- Minus
arm_2R 14518638..14519135 134..631 100 <- Minus
arm_2R 14519255..14519389 1..133 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:17 Download gff for LD36412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18631114..18631475 1256..1617 100 <- Minus
2R 18631537..18631767 1025..1255 100 <- Minus
2R 18631828..18632137 715..1024 100 <- Minus
2R 18632195..18632277 632..714 100 <- Minus
2R 18632332..18632829 134..631 100 <- Minus
2R 18632949..18633083 1..133 98   Minus

LD36412.pep Sequence

Translation from 139 to 1332

> LD36412.pep
MDTEKSSSSSFEDLTNAEDTKDIRKVAAEEAASGDGAPPASVSGDGQKAE
EEDAEEECDILGNKQLIKRTIKKAPQDSFRRPIRGELVTVNFTGKLDNGT
VVENELNFQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGLK
KEGESEYLVPPDAHLTYEIELLDIKYEEFADLKSFEILRKYGTRKKERAN
FFYKRSEFTTAIHLYRRALDFLDNRDGDPDSEFDKEDLELSNSDTQTLLE
DRLIVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGK
ADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEHNEKEMYQKMLG
QAKKMEQNTATRQKQPLVDNSKLKLLGYLMGTILIGVAGVAIYRYKY*

LD36412.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12939-PA 396 GF12939-PA 1..396 1..397 1678 81.2 Plus
Dana\GF14673-PA 440 GF14673-PA 133..394 67..349 239 25 Plus
Dana\GF11585-PA 108 GF11585-PA 9..108 74..175 145 33 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20961-PA 397 GG20961-PA 1..397 1..397 1904 94 Plus
Dere\GG10059-PA 439 GG10059-PA 132..393 67..349 228 26.2 Plus
Dere\GG21957-PA 108 GG21957-PA 9..108 74..175 145 33 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21577-PA 401 GH21577-PA 1..401 1..397 1543 74.6 Plus
Dgri\GH11297-PA 441 GH11297-PA 142..415 77..369 209 23 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
zda-PD 397 CG5482-PD 1..397 1..397 2013 100 Plus
zda-PC 397 CG5482-PC 1..397 1..397 2013 100 Plus
zda-PB 397 CG5482-PB 1..397 1..397 2013 100 Plus
zda-PA 397 CG5482-PA 1..397 1..397 2013 100 Plus
Fkbp59-PB 439 CG4535-PB 132..403 67..359 239 25.1 Plus
Fkbp59-PA 439 CG4535-PA 132..403 67..359 239 25.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19549-PA 401 GI19549-PA 1..401 1..397 1576 75.6 Plus
Dmoj\GI17716-PA 441 GI17716-PA 133..395 67..349 214 23.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11238-PA 394 GL11238-PA 1..394 1..397 1659 78.6 Plus
Dper\GL18937-PA 440 GL18937-PA 140..372 75..327 197 23.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18915-PA 394 GA18915-PA 1..394 1..397 1666 78.8 Plus
Dpse\GA18239-PA 440 GA18239-PA 140..372 75..327 197 23.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19892-PA 397 GM19892-PA 1..397 1..397 2060 97.2 Plus
Dsec\GM17712-PA 439 GM17712-PA 132..393 67..349 223 26 Plus
Dsec\GM21945-PA 108 GM21945-PA 9..108 74..175 146 33 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25378-PA 398 GD25378-PA 1..398 1..397 2057 97.5 Plus
Dsim\GD25374-PA 129 GD25374-PA 1..92 261..353 348 77.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21121-PA 402 GJ21121-PA 1..402 1..397 1597 74 Plus
Dvir\GJ17544-PA 441 GJ17544-PA 133..415 67..369 240 24.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21681-PA 405 GK21681-PA 1..405 1..397 1663 79.3 Plus
Dwil\GK23813-PA 440 GK23813-PA 133..394 67..349 209 25.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13900-PA 397 GE13900-PA 1..397 1..397 1859 94.2 Plus
Dyak\FKBP59-PA 439 GE18873-PA 132..393 67..349 219 25.9 Plus

LD36412.hyp Sequence

Translation from 139 to 1332

> LD36412.hyp
MDTEKSSSSSFEDLTNAEDTKDIRKVAAEEAASGDGAPPASVSGDGQKAE
EEDAEEECDILGNKQLIKRTIKKAPQDSFRRPIRGELVTVNFTGKLDNGT
VVENELNFQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGLK
KEGESEYLVPPDAHLTYEIELLDIKYEEFADLKSFEILRKYGTRKKERAN
FFYKRSEFTTAIHLYRRALDFLDNRDGDPDSEFDKEDLELSNSDTQTLLE
DRLIVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGK
ADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEHNEKEMYQKMLG
QAKKMEQNTATRQKQPLVDNSKLKLLGYLMGTILIGVAGVAIYRYKY*

LD36412.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5482-PD 397 CG5482-PD 1..397 1..397 2013 100 Plus
CG5482-PC 397 CG5482-PC 1..397 1..397 2013 100 Plus
CG5482-PB 397 CG5482-PB 1..397 1..397 2013 100 Plus
CG5482-PA 397 CG5482-PA 1..397 1..397 2013 100 Plus
FKBP59-PB 439 CG4535-PB 132..403 67..359 239 25.1 Plus