Clone LD36454 Report

Search the DGRC for LD36454

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:364
Well:54
Vector:pOT2
Associated Gene/TranscriptCG17565-RA
Protein status:LD36454.pep: gold
Preliminary Size:1584
Sequenced Size:1588

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17565 2001-01-01 Release 2 assignment
CG17565 2001-07-04 Blastp of sequenced clone
CG17565 2003-01-01 Sim4 clustering to Release 3
CG17565 2008-04-29 Release 5.5 accounting
CG17565 2008-08-15 Release 5.9 accounting
CG17565 2008-12-18 5.12 accounting

Clone Sequence Records

LD36454.complete Sequence

1588 bp (1588 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051869

> LD36454.complete
AAACAAAAACCATTCGCTTAAAATTCCTGCTCGGCAAATCTTTTTAGTTT
ATTTAATTTAATTTAACCGGCTCGGAGTAGAAATGGGAACCGAGGAGGAG
CTGATGTTCCGCAACTTCCAGCGCCTGAAAAGCTACATCTTCGACGACGA
GAAGGTGTCCACCACCACATCCCGCGAGCAACAAAAGACGGAGAGTTCGG
TGGAGAAATGCTTCGACCGCTTCGAGCAGATAATGTTCACCGACCCGCGC
CTCACCCAGATCTTCCGGCTGGAGCACCAGTACTACCTGGACGCGATGCT
GAGGCGGCTGCCGTCCAATTACGAGTGCCTGGACAGCAGTCGCGCGTGGT
GCGTTTACTGGATCCTGCAGGCGGCCCAGCTACTTAGCTTTAACTTCGAC
GACCAGACATTGAACCACGTGGTCCAGTTTCTAAGCAACTGCCGTTCGCC
GACTGGGGGTTTTGGAGGAGGACCTGGACAGTATGCCCATCTGGCGCCCA
CCTATGCAGCAGTGAACAGTCTGTGCATCATCGGAAGCGAGCAGGCGTAC
CGTGCCATAGACCGACCGACTTTGGTCCAGTTCCTGTTCAGTGTACGTGA
CTCAGACGGCTCCTTCCGGCTCCACGTGGATGGTGAGACGGATGTGCGTG
GCGCCTACTGCGCAATCTCCTGCGCAAAGCTGCTAAATCTTCCCGAGCCA
GTGATCAAGGAGCTATTTGCCGGCACTGGCGACTGGATAGCCCAGTGTCA
GACATACGAGGGAGGATTTGGAGGAGCCCCTGGTCTGGAGGCCCATGGTG
GCTACACCTTCTGCGGAATCGCGGGCCTGGCGCTGCTCAACGAGGCTGAT
AAGTGCGACAGGCAGGCTTTGCTCAAATGGACACTGCGCCGTCAGATGAC
CTACGAAGGCGGCTTCCAAGGGAGGACCAACAAACTGGTTGATGGCTGCT
ACTCCTTCTGGGTGGGAGCCACCATTCCCATTACGCAGGCAACGCTATCC
GGCGTCGATAAGCAAATGGAGCACACCCTTTTCGATGTGGAGGCCCTGCA
GGAGTACATCCTGCTCTGCTGCCAAAAGCAGAGCGGCGGGCTTATCGACA
AACCCGGAAAACCGCAGGATCTCTACCACACATGCTATACTCTTAGTGGC
GTTTCCATTGCCCAGCACTCGGAGTGCGCCAGCAGCCCCCAGGTCCTGGG
CGACACCATTAACGAGCTACTGCCTACCCACCCACTGTTCAACATCCCAC
CAAAGTCAGTTGCAGCTGCCAGGAGCCACTTCAGCAATTCCAATGACACA
GAGTTCTTGGGGAAAGACAGTCCCAGCAAGGAGGAGAGTTAAGGCTTCAG
GTCAGGAGGAGGAGCCTGCGTAATGAGGACGTTTTGCTGGTGGTTTACCT
TTAAAGAACTAAACTTGGTTTAATAAATTAATCTTTGAAATATTGTATTT
TTCGCTTCTTGTATAAATGTACTTATTGGAAAAGGAATTGATTAAAATGT
TTAACGTTTTCTAAAAAATATTTATGTCATATATTATTTCGAAATAAAAT
TATTATGTTTTCAAATAAAAAAAAAAAAAAAAAAAAAA

LD36454.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-RA 1592 CG17565-RA 27..1592 1..1566 7830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12258246..12258917 439..1110 3360 100 Plus
chr3R 27901430 chr3R 12258974..12259426 1111..1566 2125 98.2 Plus
chr3R 27901430 chr3R 12257923..12258187 178..442 1295 99.2 Plus
chr3R 27901430 chr3R 12257690..12257870 1..181 905 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16433557..16434228 439..1110 3360 100 Plus
3R 32079331 3R 16434285..16434743 1111..1569 2295 100 Plus
3R 32079331 3R 16433234..16433498 178..442 1295 99.2 Plus
3R 32079331 3R 16433001..16433181 1..181 905 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16174388..16175059 439..1110 3360 100 Plus
3R 31820162 3R 16175116..16175574 1111..1569 2295 100 Plus
3R 31820162 3R 16174065..16174329 178..442 1295 99.2 Plus
3R 31820162 3R 16173832..16174012 1..181 905 100 Plus
Blast to na_te.dros performed 2019-03-16 03:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 7093..7255 1405..1564 130 59 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 1491..1589 1453..1552 127 62.4 Plus

LD36454.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:03:48 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12257690..12257870 1..181 100 -> Plus
chr3R 12257927..12258183 182..438 100 -> Plus
chr3R 12258246..12258917 439..1110 100 -> Plus
chr3R 12258974..12259426 1111..1566 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:00 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 1..1260 83..1342 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:55 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 1..1260 83..1342 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:58 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 1..1260 83..1342 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:25 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 1..1260 83..1342 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:27 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 1..1260 83..1342 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:53 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 21..1586 1..1566 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:55 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 21..1586 1..1566 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:58 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 4..1569 1..1566 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:25 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 21..1586 1..1566 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:27 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
CG17565-RA 4..1569 1..1566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:48 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16433238..16433494 182..438 100 -> Plus
3R 16433001..16433181 1..181 100 -> Plus
3R 16433557..16434228 439..1110 100 -> Plus
3R 16434285..16434740 1111..1566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:48 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16433238..16433494 182..438 100 -> Plus
3R 16433001..16433181 1..181 100 -> Plus
3R 16433557..16434228 439..1110 100 -> Plus
3R 16434285..16434740 1111..1566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:48 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16433238..16433494 182..438 100 -> Plus
3R 16433001..16433181 1..181 100 -> Plus
3R 16433557..16434228 439..1110 100 -> Plus
3R 16434285..16434740 1111..1566 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:58 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12258723..12258903 1..181 100 -> Plus
arm_3R 12258960..12259216 182..438 100 -> Plus
arm_3R 12259279..12259950 439..1110 100 -> Plus
arm_3R 12260007..12260462 1111..1566 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:38 Download gff for LD36454.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16173832..16174012 1..181 100 -> Plus
3R 16174069..16174325 182..438 100 -> Plus
3R 16174388..16175059 439..1110 100 -> Plus
3R 16175116..16175571 1111..1566 100   Plus

LD36454.pep Sequence

Translation from 82 to 1341

> LD36454.pep
MGTEEELMFRNFQRLKSYIFDDEKVSTTTSREQQKTESSVEKCFDRFEQI
MFTDPRLTQIFRLEHQYYLDAMLRRLPSNYECLDSSRAWCVYWILQAAQL
LSFNFDDQTLNHVVQFLSNCRSPTGGFGGGPGQYAHLAPTYAAVNSLCII
GSEQAYRAIDRPTLVQFLFSVRDSDGSFRLHVDGETDVRGAYCAISCAKL
LNLPEPVIKELFAGTGDWIAQCQTYEGGFGGAPGLEAHGGYTFCGIAGLA
LLNEADKCDRQALLKWTLRRQMTYEGGFQGRTNKLVDGCYSFWVGATIPI
TQATLSGVDKQMEHTLFDVEALQEYILLCCQKQSGGLIDKPGKPQDLYHT
CYTLSGVSIAQHSECASSPQVLGDTINELLPTHPLFNIPPKSVAAARSHF
SNSNDTEFLGKDSPSKEES*

LD36454.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18495-PA 415 GF18495-PA 5..414 4..413 1902 87.6 Plus
Dana\GF14990-PA 341 GF14990-PA 55..312 91..363 334 32.1 Plus
Dana\GF23591-PA 404 GF23591-PA 115..327 133..359 283 35.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17001-PA 419 GG17001-PA 1..419 1..419 2127 95.2 Plus
Dere\GG24898-PA 345 GG24898-PA 59..316 91..363 337 31.4 Plus
Dere\GG25031-PA 402 GG25031-PA 115..326 133..358 278 35.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19342-PA 415 GH19342-PA 1..415 1..419 1666 74.5 Plus
Dgri\GH10686-PA 342 GH10686-PA 57..314 91..363 333 31 Plus
Dgri\GH13329-PA 388 GH13329-PA 116..327 133..358 288 35.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-PA 419 CG17565-PA 1..419 1..419 2237 100 Plus
betaggt-II-PA 347 CG18627-PA 61..318 91..363 345 31.4 Plus
betaggt-I-PB 376 CG3469-PB 109..320 133..358 279 34.8 Plus
betaggt-I-PA 395 CG3469-PA 109..320 133..358 279 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22551-PA 414 GI22551-PA 1..404 1..404 1741 80.2 Plus
Dmoj\GI11182-PA 341 GI11182-PA 55..311 91..362 316 30 Plus
Dmoj\GI17803-PA 389 GI17803-PA 109..320 133..358 291 33.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21606-PA 424 GL21606-PA 1..408 1..408 1913 88.7 Plus
Dper\GL26294-PA 342 GL26294-PA 56..313 91..363 341 31.8 Plus
Dper\GL18644-PA 404 GL18644-PA 116..327 133..358 275 34.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14558-PA 424 GA14558-PA 1..408 1..408 1909 88.5 Plus
Dpse\GA15021-PA 342 GA15021-PA 56..313 91..363 341 31.8 Plus
Dpse\GA17468-PA 405 GA17468-PA 116..327 133..358 275 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15154-PA 425 GM15154-PA 1..419 1..419 2218 97.1 Plus
Dsec\GM18378-PA 346 GM18378-PA 60..317 91..363 341 31.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19096-PA 419 GD19096-PA 1..419 1..419 2217 97.6 Plus
Dsim\GD23309-PA 326 GD23309-PA 109..312 133..350 272 35.6 Plus
Dsim\GD23193-PA 212 GD23193-PA 71..183 240..363 163 32.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23741-PA 417 GJ23741-PA 1..417 1..419 1804 80.7 Plus
Dvir\GJ18324-PA 345 GJ18324-PA 59..316 91..363 322 29.6 Plus
Dvir\GJ17628-PA 396 GJ17628-PA 3..327 47..358 299 29.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13218-PA 419 GK13218-PA 1..412 1..416 1833 83.7 Plus
Dwil\GK24285-PA 347 GK24285-PA 61..305 91..350 323 32.6 Plus
Dwil\GK24474-PA 392 GK24474-PA 115..327 133..359 296 36.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24394-PA 419 GE24394-PA 1..419 1..419 2119 94.7 Plus
Dyak\GE18191-PA 342 GE18191-PA 56..313 91..363 337 31.4 Plus
Dyak\GE11266-PA 402 GE11266-PA 115..327 133..359 280 35.1 Plus

LD36454.hyp Sequence

Translation from 82 to 1341

> LD36454.hyp
MGTEEELMFRNFQRLKSYIFDDEKVSTTTSREQQKTESSVEKCFDRFEQI
MFTDPRLTQIFRLEHQYYLDAMLRRLPSNYECLDSSRAWCVYWILQAAQL
LSFNFDDQTLNHVVQFLSNCRSPTGGFGGGPGQYAHLAPTYAAVNSLCII
GSEQAYRAIDRPTLVQFLFSVRDSDGSFRLHVDGETDVRGAYCAISCAKL
LNLPEPVIKELFAGTGDWIAQCQTYEGGFGGAPGLEAHGGYTFCGIAGLA
LLNEADKCDRQALLKWTLRRQMTYEGGFQGRTNKLVDGCYSFWVGATIPI
TQATLSGVDKQMEHTLFDVEALQEYILLCCQKQSGGLIDKPGKPQDLYHT
CYTLSGVSIAQHSECASSPQVLGDTINELLPTHPLFNIPPKSVAAARSHF
SNSNDTEFLGKDSPSKEES*

LD36454.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17565-PA 419 CG17565-PA 1..419 1..419 2237 100 Plus
betaggt-II-PA 347 CG18627-PA 61..318 91..363 345 31.4 Plus
betaggt-I-PB 376 CG3469-PB 109..320 133..358 279 34.8 Plus
betaggt-I-PA 395 CG3469-PA 109..320 133..358 279 34.8 Plus