Clone LD36501 Report

Search the DGRC for LD36501

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:365
Well:1
Vector:pOT2
Associated Gene/TranscriptCG8289-RA
Protein status:LD36501.pep: gold
Preliminary Size:1759
Sequenced Size:1769

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8289 2001-01-01 Release 2 assignment
CG8289 2001-07-04 Blastp of sequenced clone
CG8289 2003-01-01 Sim4 clustering to Release 3
CG8289 2008-04-29 Release 5.5 accounting
CG8289 2008-08-15 Release 5.9 accounting
CG8289 2008-12-18 5.12 accounting

Clone Sequence Records

LD36501.complete Sequence

1769 bp (1769 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051870

> LD36501.complete
AAACTCTATAAAGAATTTGTTTTGCTGGTACGCGGCAATTGAAATCGCCA
CCGTAGAGCAAATTGGACGTTGTCACACAACCGGATAAACAAGTGCATTA
TGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTAAGCGCAGGAACGGAGTC
GCCAACGAGAGCGAAAACGAGGAGATTGACCAGCAAAAGTCCAATGGGAC
AGGTCGATCGTCCAGGAAGACGCCGAACAAACGAAAGGCCAAACTGACTG
TGGCCTCTGACAGCGAAGACAGCGATTGCCAGACCTCTACCTCCAACGTG
GATGTACCAGCTGCAAGGAACAAGCGCAAGGTGGGCAAGGCCAGGAACGC
CACCACTTCGCCCCGCAAAAATGGCAAAAAAATCGTTATAGAGGATTCGG
ATGATGATGCTAATCATTCCGATGTAGACCCTAGTGCCGACAGTTCGCCA
AGGAAGCCAAATATCAAACGCCAGACACGGCGATCCGTGCGCGGTGAAAC
GGAAGATAGCAATGAACTGCCCTCCACCTCCAAAGCCTCTGCACATGCAT
CAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGGCTTCGACTTCTTCCGTC
AAAAATGGCAAGAAGGTTGCTGAAAAGGATTCGGAATCCGATGTCGATGC
TGGAACAGAGGATGAGAAATCAGCTCAACCCCAGAAGGTTGCAGCTAAAT
CGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGGGACGTGGTCGACGGAAC
GCCGGCACCAAGAAAGCCGACGATTCAATCGACCCAGAAAAGCAATGGGA
AGTCGAAAAAATTCTTGATCACGTTGCCACCAAGGAGGGCGACATGTTTA
AGATCCGATGGAAGAAGTATGGACCGAAGGATGATTCCTGGGAGCCGAGT
AAGAATCTGGCGTGCGATGCGCTTATCGAAAAGTTTATGCGGAAACAAGC
AACCCAGGAGAACGTGGACGTTAAGGAGCTGCGCGAATCGCCCAAGAAGA
CCGAGCGCCTCGTCGATGAATGCTATCCCAGGACAAATCTGCACAATCGT
ATTGAACGCTCCTCGAAGCGCTCTTCCGCCAAAAACCGCATTTTCTACGG
CGAGGAGTGAGGAAGGGCAACAAGGAAGGAAATCCATGTAGGAATTTAGT
ACACTTTTTTTTTTTTACATATAATATTACAACACATGCGGACCGAAGTA
CGCGGAAAGGTGACCCATGGCGGCTCCAGTTAGATTTTAACGGAAAATTT
CCCTTATCGTTATTGGTTTTAAAAAAGCTCGCGGGCGGAGCCAATCCACA
TCATGTCCACAATCCTGACTATTGGCGGACAACTTTACGGGCAACACAAA
TAACTAAATATTAAATTCGGATTTTAGTACATAAGTAAAAAGGACAGGCA
ATCGACTGCATCACAGTGCGTACATACATGTAGTATTATATCTGGTTAAT
TGCACTCAACCAGCGTAGAATGTAAGGCATCATTTCTGTAGCTTTAGTTT
TATCCTTTGAGTAATTGATGTTTGTATTGGTCAATTGCCACAGCTGAAAA
TAGCCTCTCAACTACTCTTCCAATCATCTTAATTCATAATATTCGTTCTT
ACGTACGTACGCCATTGTACATACAATTATAATGAGCGAACATTATAATT
AGTAATGGAACATGCGTACGTATGCAATAGTAAACATCCATTATAATTAG
CAATGGGAACCTGCCGTTTCCACTACAAAATAAAATCATTTATTGGTCAA
GAAAAAAAAAAAAAAAAAA

LD36501.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-RA 1926 CG8289-RA 132..1883 1..1752 8760 100 Plus
CG8289.b 1822 CG8289.b 61..1809 1..1752 8690 99.8 Plus
CG8289.a 1856 CG8289.a 61..1148 1..1088 5440 100 Plus
CG8289.a 1856 CG8289.a 1179..1843 1088..1752 3325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17524668..17525351 684..1 3420 100 Minus
chrX 22417052 chrX 17523017..17523680 1751..1088 3320 100 Minus
chrX 22417052 chrX 17523900..17524306 1088..682 2035 100 Minus
chr2L 23010047 chr2L 9787691..9787899 721..931 505 84.8 Plus
chr2L 23010047 chr2L 9788631..9788746 684..569 295 83.6 Minus
chr2L 23010047 chr2L 9788754..9788853 440..340 275 87.1 Minus
chr2L 23010047 chr2L 9787984..9788047 366..429 185 85.9 Plus
chr2L 23010047 chr2L 9788917..9789080 920..757 185 77 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17635342..17636025 684..1 3420 100 Minus
X 23542271 X 17633690..17634354 1752..1088 3325 100 Minus
X 23542271 X 17634574..17634980 1088..682 2035 100 Minus
2L 23513712 2L 9788850..9789058 721..931 505 84.8 Plus
2L 23513712 2L 9789791..9789906 684..569 295 83.6 Minus
2L 23513712 2L 9789914..9790013 440..340 275 87.1 Minus
2L 23513712 2L 9789143..9789206 366..429 185 85.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17643440..17644123 684..1 3420 100 Minus
X 23527363 X 17641788..17642452 1752..1088 3325 100 Minus
X 23527363 X 17642672..17643078 1088..682 2035 100 Minus
2L 23513712 2L 9788850..9789058 721..931 525 84.8 Plus
2L 23513712 2L 9789791..9789906 684..569 295 83.6 Minus
2L 23513712 2L 9789914..9790013 440..340 285 87.1 Minus
Blast to na_te.dros performed on 2019-03-15 22:28:54 has no hits.

LD36501.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:29:58 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17523017..17523679 1089..1751 100 <- Minus
chrX 17523900..17524303 685..1088 100 <- Minus
chrX 17524668..17525351 1..684 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:01 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 1..1011 100..1110 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:56 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 1..1011 100..1110 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:27 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 1..1011 100..1110 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:26 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 1..1011 100..1110 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:12 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 1..1011 100..1110 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:55 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 18..1768 1..1751 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:56 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 18..1768 1..1751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:27 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 20..1770 1..1751 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:26 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 18..1768 1..1751 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:12 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
CG8289-RA 20..1770 1..1751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:58 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
X 17633691..17634353 1089..1751 100 <- Minus
X 17634574..17634977 685..1088 100 <- Minus
X 17635342..17636025 1..684 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:58 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
X 17633691..17634353 1089..1751 100 <- Minus
X 17634574..17634977 685..1088 100 <- Minus
X 17635342..17636025 1..684 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:58 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
X 17633691..17634353 1089..1751 100 <- Minus
X 17634574..17634977 685..1088 100 <- Minus
X 17635342..17636025 1..684 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:27 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17527724..17528386 1089..1751 100 <- Minus
arm_X 17528607..17529010 685..1088 100 <- Minus
arm_X 17529375..17530058 1..684 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:40 Download gff for LD36501.complete
Subject Subject Range Query Range Percent Splice Strand
X 17641789..17642451 1089..1751 100 <- Minus
X 17642672..17643075 685..1088 100 <- Minus
X 17643440..17644123 1..684 100   Minus

LD36501.pep Sequence

Translation from 99 to 1109

> LD36501.pep
MAKASKKVAESKRRNGVANESENEEIDQQKSNGTGRSSRKTPNKRKAKLT
VASDSEDSDCQTSTSNVDVPAARNKRKVGKARNATTSPRKNGKKIVIEDS
DDDANHSDVDPSADSSPRKPNIKRQTRRSVRGETEDSNELPSTSKASAHA
SSPIKKRKLSRASTSSVKNGKKVAEKDSESDVDAGTEDEKSAQPQKVAAK
SKSSPNAKKAKGRGRRNAGTKKADDSIDPEKQWEVEKILDHVATKEGDMF
KIRWKKYGPKDDSWEPSKNLACDALIEKFMRKQATQENVDVKELRESPKK
TERLVDECYPRTNLHNRIERSSKRSSAKNRIFYGEE*

LD36501.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22550-PA 367 GF22550-PA 222..367 196..336 413 55.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18172-PA 345 GG18172-PA 1..345 1..336 1136 71.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24044-PA 333 GH24044-PA 191..333 190..336 404 55.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-PA 336 CG8289-PA 1..336 1..336 1712 100 Plus
CG8289-PB 335 CG8289-PB 1..335 1..336 1695 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15720-PA 340 GI15720-PA 182..340 175..336 416 52.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20390-PA 85 GL20390-PA 13..82 262..331 249 62.9 Plus
Dper\GL20389-PA 276 GL20389-PA 203..260 227..284 149 43.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20959-PA 424 GA20959-PA 315..424 228..336 428 63.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13304-PA 336 GM13304-PA 1..336 1..336 1444 87.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17350-PA 336 GD17350-PA 1..336 1..336 1516 88.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15248-PA 333 GJ15248-PA 196..333 195..336 416 59.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25767-PA 322 GK25767-PA 195..322 213..336 412 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15582-PA 344 GE15582-PA 1..344 1..336 1223 72.7 Plus

LD36501.hyp Sequence

Translation from 99 to 1109

> LD36501.hyp
MAKASKKVAESKRRNGVANESENEEIDQQKSNGTGRSSRKTPNKRKAKLT
VASDSEDSDCQTSTSNVDVPAARNKRKVGKARNATTSPRKNGKKIVIEDS
DDDANHSDVDPSADSSPRKPNIKRQTRRSVRGETEDSNELPSTSKASAHA
SSPIKKRKLSRASTSSVKNGKKVAEKDSESDVDAGTEDEKSAQPQKVAAK
SKSSPNAKKAKGRGRRNAGTKKADDSIDPEKQWEVEKILDHVATKEGDMF
KIRWKKYGPKDDSWEPSKNLACDALIEKFMRKQATQENVDVKELRESPKK
TERLVDECYPRTNLHNRIERSSKRSSAKNRIFYGEE*

LD36501.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8289-PA 336 CG8289-PA 1..336 1..336 1712 100 Plus
CG8289-PB 335 CG8289-PB 1..335 1..336 1695 99.7 Plus