Clone LD36566 Report

Search the DGRC for LD36566

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:365
Well:66
Vector:pOT2
Associated Gene/TranscriptCG1532-RA
Protein status:LD36566.pep: gold
Preliminary Size:1153
Sequenced Size:1022

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1532 2001-01-01 Release 2 assignment
CG1532 2003-01-01 Sim4 clustering to Release 3
CG1532 2003-01-14 Blastp of sequenced clone
CG1532 2008-04-29 Release 5.5 accounting
CG1532 2008-08-15 Release 5.9 accounting
CG1532 2008-12-18 5.12 accounting

Clone Sequence Records

LD36566.complete Sequence

1022 bp (1022 high quality bases) assembled on 2003-01-14

GenBank Submission: AY069606

> LD36566.complete
AGCTGATAAACACAAAGATGTCGGCCATATCGGGACGCGCCCTGCACTAT
GTGTTCAAAATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAAT
CTTGGGAATGACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACG
CAGCTTGCAACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGT
TATGGACCCGAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGG
AGTGAGCAGCTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACT
CCAAGGATATCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAG
GTGTCTGGAAAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTT
CTATGTGATCGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGG
AGCTTAATGTGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTG
CTGCAACTGAAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTA
CGGTGAACAGCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTA
ATAGAGCTAAGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAG
CAGCCACCTCTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAAC
ACCTCTGATTACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAA
TTCTCGGTGACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGC
TTCGGCCAGCTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCG
AAACATCGAAAAGGATCCCTTCCAACCGAAATGACTTTCCCAGCAATCCT
TGAGCACTGTTATTTGTACACAGCACCTTTTGTATTTGGATTTTGTATTG
TCTAATGGTTAATGGCTGTTTTCAACGGAGATATTATACTTTTTAAAACA
TTGTAAAAAAAAAAAAAAAAAA

LD36566.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-RA 1345 CG1532-RA 175..1182 1..1008 5040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20891445..20892179 1004..270 3675 100 Minus
chrX 22417052 chrX 20893335..20893449 115..1 575 100 Minus
chrX 22417052 chrX 20892894..20893002 271..163 545 100 Minus
chrX 22417052 chrX 20893059..20893110 164..113 260 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21026284..21027022 1008..270 3695 100 Minus
X 23542271 X 21028178..21028292 115..1 575 100 Minus
X 23542271 X 21027737..21027845 271..163 545 100 Minus
X 23542271 X 21027902..21027953 164..113 260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21011376..21012114 1008..270 3695 100 Minus
X 23527363 X 21013270..21013384 115..1 575 100 Minus
X 23527363 X 21012829..21012937 271..163 545 100 Minus
X 23527363 X 21012994..21013045 164..113 260 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:28:56 has no hits.

LD36566.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:00 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20891445..20892178 271..1004 100 <- Minus
chrX 20892895..20893001 164..270 100 <- Minus
chrX 20893060..20893109 114..163 100 <- Minus
chrX 20893337..20893449 1..113 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:06 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 1..867 18..884 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:57:10 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 1..867 18..884 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:31 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 1..867 18..884 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:48:00 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 1..867 18..884 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:18 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 1..867 18..884 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:13:10 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 55..1058 1..1004 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:57:10 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 55..1058 1..1004 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:31 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 70..1073 1..1004 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:48:00 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 55..1058 1..1004 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:18 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
CG1532-RA 70..1073 1..1004 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:00 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
X 21027738..21027844 164..270 100 <- Minus
X 21027903..21027952 114..163 100 <- Minus
X 21028180..21028292 1..113 100   Minus
X 21026288..21027021 271..1004 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:00 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
X 21027738..21027844 164..270 100 <- Minus
X 21027903..21027952 114..163 100 <- Minus
X 21028180..21028292 1..113 100   Minus
X 21026288..21027021 271..1004 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:00 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
X 21027738..21027844 164..270 100 <- Minus
X 21027903..21027952 114..163 100 <- Minus
X 21028180..21028292 1..113 100   Minus
X 21026288..21027021 271..1004 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:31 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20897315..20898048 271..1004 100 <- Minus
arm_X 20898765..20898871 164..270 100 <- Minus
arm_X 20898930..20898979 114..163 100 <- Minus
arm_X 20899207..20899319 1..113 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:23 Download gff for LD36566.complete
Subject Subject Range Query Range Percent Splice Strand
X 21011380..21012113 271..1004 100 <- Minus
X 21012830..21012936 164..270 100 <- Minus
X 21012995..21013044 114..163 100 <- Minus
X 21013272..21013384 1..113 100   Minus

LD36566.hyp Sequence

Translation from 2 to 883

> LD36566.hyp
LINTKMSAISGRALHYVFKIGDRAKNAFFFRQILGMTVLRHEEFKEGCDA
ACNGPYDNRWSKTMVGYGPESSHFVIELTYNYGVSSYEMGNDFGGVTIHS
KDILSRAAEHSYPVTQVSGKAGSLLTSPDGYKFYVIDQASASSDPVQSVE
LNVSNLQNSRKYWHDLLQLKVLEENEASVRLSYGEQQASLEITQISEPIN
RAKAYGRIAFAIPAAQQPPLQEAVKAAGGAILTPLITLDTPGKATVTVVI
LGDPDGHEICFVDEEGFGQLSQVESDGDKRLDRNIEKDPFQPK*

LD36566.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-PB 288 CG1532-PB 1..288 6..293 1493 100 Plus
CG1532-PA 288 CG1532-PA 1..288 6..293 1493 100 Plus

LD36566.pep Sequence

Translation from 17 to 883

> LD36566.pep
MSAISGRALHYVFKIGDRAKNAFFFRQILGMTVLRHEEFKEGCDAACNGP
YDNRWSKTMVGYGPESSHFVIELTYNYGVSSYEMGNDFGGVTIHSKDILS
RAAEHSYPVTQVSGKAGSLLTSPDGYKFYVIDQASASSDPVQSVELNVSN
LQNSRKYWHDLLQLKVLEENEASVRLSYGEQQASLEITQISEPINRAKAY
GRIAFAIPAAQQPPLQEAVKAAGGAILTPLITLDTPGKATVTVVILGDPD
GHEICFVDEEGFGQLSQVESDGDKRLDRNIEKDPFQPK*

LD36566.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21860-PA 288 GF21860-PA 1..288 1..288 1307 81.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17561-PA 288 GG17561-PA 1..288 1..288 1465 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17763-PA 287 GH17763-PA 1..286 1..286 1126 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1532-PB 288 CG1532-PB 1..288 1..288 1493 100 Plus
CG1532-PA 288 CG1532-PA 1..288 1..288 1493 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15097-PA 285 GI15097-PA 1..285 1..288 1121 70.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15913-PA 288 GL15913-PA 1..286 1..286 1224 78.5 Plus
Dper\GL15748-PA 289 GL15748-PA 1..247 1..247 960 72.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25437-PA 288 GA25437-PA 1..286 1..286 1227 78.8 Plus
Dpse\GA26081-PA 288 GA26081-PA 1..288 1..288 1155 73.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22646-PA 288 GM22646-PA 1..288 1..288 1491 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15515-PA 376 GD15515-PA 1..84 1..84 474 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18904-PA 288 GJ18904-PA 1..285 1..286 1116 69.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20039-PA 299 GK20039-PA 5..290 1..286 1189 74 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15322-PA 288 GE15322-PA 1..288 1..288 1466 94.4 Plus