Clone LD36568 Report

Search the DGRC for LD36568

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:365
Well:68
Vector:pOT2
Associated Gene/TranscriptCG11284-RA
Protein status:LD36568.pep: gold
Preliminary Size:2039
Sequenced Size:1994

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11284 2001-11-29 Blastp of sequenced clone
CG11284 2003-01-01 Sim4 clustering to Release 3
CG11284 2008-04-29 Release 5.5 accounting
CG11284 2008-08-15 Release 5.9 accounting
CG11284 2008-12-18 5.12 accounting

Clone Sequence Records

LD36568.complete Sequence

1994 bp (1994 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069607

> LD36568.complete
CGCATTGAATTTTCGTTCTGGAATTGAAATTAATTCGCTTCGAACTTCGC
GTTTAGCGTTCGTACACGGTTTTTGTTCTTGTTTTTTTGCGCAGTGCGTG
TGTACATGTGTGTGGTACTTGTGTGCGCGGCGGCAAATGCGAAATTACAA
GCATAAATAAATGCCGTCGATTGTTTGCTAATTAGCTATCGGCGAATATC
GGGAAAACGAGCGGAGAACGGCAAATAGGCGAAAACTAAATCAACAGGTG
CATTTCCAAGCGGGCTTAACCAATCCGTGGATCTGAAAAGGAGGAGCAGG
CGTCGGTCGTTGGAGGCGCCGGCATAGAGAACTTTTCCGAGACGCGAGCG
CCCAGCGGAGCAGTCGCCACCACGACGTCGACATCGCCACCGCCGCCGCG
AGCCGCGCTGCTGTCACCAGCCGAGCATTTGGACGCCAGCGCCGACGATC
GCGGGCGTGTGTACAAGCTCCGGAAGAAGAAATACCTGAACGCAGCGCAT
ATCACATAGGGAGTCGTCGTCGGTGGAGGAGTGGAGTAGCCAGTGCGGTT
TGGGTGCTAGGAATCGGTGCTAGGAGCTAGGATTAGGAGATCAAAACTGG
AAAAAAGCATAATTTAATTCGAGGAGGAATCTGGGAAAGCGCAATGCCCG
TACAATCCCCAATTGAGATCAGCAACCGTGCCATCGAGCACATTGACGAT
GTGGATCCACTAGAGTACCATGGCCATTGGGAGCCGGTGGGCGTGGCCCG
GGTACAGAACACAGGCACCTCCGCAATGGTCACATTCAGCAAGCGAAAAC
AACAGCCATACATAATCGGCGGTGCCCTGGAGCAGGACATGTACGTGTTC
GAGCAGCTGCACTTCCATTGGTCGGACTGCGATGAATCCGGCTGCGAGCA
TACACTGGAGGGCATGAAGTACTCAATGGAGGCCCATGCCGTCCACTACA
ATTCGAAGTACAAGGACTTCACGGAGGCCAAGAACAAGCCCGATGGCCTG
GCCGTCGTCGCATTCTTTATTCAGGCCTGCGGCGAGAAGGACTGTCCCGA
GTTCAAGAAGATCACCGAGGGCATCCGCATCGTTCAAAAGATCCATACGA
GTGCATCGCTGGATTCCGATTGCCTATCATGGATTGGTCTGCAGGAGCTG
AGCAAACATTATTACACGTACAAGGGTTCGCTGACAACGGCGCCGTACTT
TGAGAGTGTCACCTGGATCATATACCGCACCCCCATCTATGTGTCTCGCG
GCCAGGTTCAGGTGTTTCGCAATTTGCAATCGTGTCCCAAAGATGAGTCC
AAAAAGATAGTCAACAATTATCGCGAGATCCAGCGTCCGCACAAGGATCC
GGAAATCTTCTTTGCGCGCAACACCAATCCAAAGTCCAAGTTATAATGTG
CTTGCCATATGACTTGGATACAATTCTACAATTCCCGCTCCCGCTGACTT
TCCTTTTTCCAACCTTTCGCGCAATTTTCTCCGCCCAATCGCCTATCTAA
ACTATAGCTATGTGTAAACATTTATCTGTCTATGGTTGTCTGTAAGCTGC
TTTTGTTATTTGCCTCATGTACATAGCGTTATATACCTAACAAAACATAC
ATATACATACATACATATATATATATATATATATATATATATATATACGG
AGTATTTACGATACGGATACGTGTATGGAATTTTAGTCGGAGCACGCGGT
TGCCTTGCATTGAATATTTCAGAGAAATATCGGGCACAACTACTTAAGAC
ATCTACAAGAGACGTAATCCTAACGTTTAAGTTATTAAGATAAACAGTGA
AAGCGAGAAAAAGAGGAAAATAAGAACAGTAAATCAACACATTTTGTATG
TCCAAACTGAATTTATTAAACATCTAATTAAACATGTATAAAAGTATCAA
AAAGTCATTATTAATATTAAAATGCTTATGTTAATAGGAAGAATGGATTA
AACCTATGCAAACATTTTTGTCACAAAAAAAAAAAAAAAAAAAA

LD36568.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-RA 2272 CG11284-RA 294..2269 1..1976 9880 100 Plus
CG11284.c 2056 CG11284.c 84..2053 1..1976 9765 99.6 Plus
CG11284.a 1897 CG11284.a 166..1894 248..1976 8645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8579781..8580502 1253..1974 3610 100 Plus
chrX 22417052 chrX 8578977..8579489 606..1118 2550 99.8 Plus
chrX 22417052 chrX 8578439..8578801 245..607 1800 99.7 Plus
chrX 22417052 chrX 8573322..8573570 1..249 1230 99.6 Plus
chrX 22417052 chrX 8579564..8579703 1118..1257 700 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8688034..8688757 1253..1976 3620 100 Plus
X 23542271 X 8687230..8687742 606..1118 2565 100 Plus
X 23542271 X 8686692..8687054 245..607 1815 100 Plus
X 23542271 X 8681582..8681830 1..249 1245 100 Plus
X 23542271 X 8687817..8687956 1118..1257 700 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8696132..8696855 1253..1976 3620 100 Plus
X 23527363 X 8695328..8695840 606..1118 2565 100 Plus
X 23527363 X 8694790..8695152 245..607 1815 100 Plus
X 23527363 X 8689680..8689928 1..249 1245 100 Plus
X 23527363 X 8695915..8696054 1118..1257 700 100 Plus
Blast to na_te.dros performed 2019-03-16 19:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 253..326 1858..1931 125 69.7 Plus

LD36568.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:58:31 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8573322..8573568 1..247 99 -> Plus
chrX 8578442..8578801 248..607 99 -> Plus
chrX 8578979..8579489 608..1118 99 -> Plus
chrX 8579565..8579701 1119..1255 100 -> Plus
chrX 8579784..8580124 1256..1596 100 == Plus
chrX 8580176..8580502 1648..1974 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:07 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 1..753 644..1396 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:27:00 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 1..753 644..1396 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:18 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RB 1..753 644..1396 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:54:26 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 1..753 644..1396 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:47:36 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RC 1..753 644..1396 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:03:37 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 1..1974 1..1974 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:27:00 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 1..1974 1..1974 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:18 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 32..2005 1..1974 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:54:26 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 1..1974 1..1974 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:36 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
CG11284-RA 32..2005 1..1974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:31 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
X 8681582..8681828 1..247 100 -> Plus
X 8686695..8687054 248..607 100 -> Plus
X 8687232..8687742 608..1118 100 -> Plus
X 8687818..8687954 1119..1255 100 -> Plus
X 8688037..8688755 1256..1974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:31 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
X 8681582..8681828 1..247 100 -> Plus
X 8686695..8687054 248..607 100 -> Plus
X 8687232..8687742 608..1118 100 -> Plus
X 8687818..8687954 1119..1255 100 -> Plus
X 8688037..8688755 1256..1974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:31 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
X 8681582..8681828 1..247 100 -> Plus
X 8686695..8687054 248..607 100 -> Plus
X 8687232..8687742 608..1118 100 -> Plus
X 8687818..8687954 1119..1255 100 -> Plus
X 8688037..8688755 1256..1974 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:18 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8575615..8575861 1..247 100 -> Plus
arm_X 8580728..8581087 248..607 100 -> Plus
arm_X 8581265..8581775 608..1118 100 -> Plus
arm_X 8581851..8581987 1119..1255 100 -> Plus
arm_X 8582070..8582788 1256..1974 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:30:33 Download gff for LD36568.complete
Subject Subject Range Query Range Percent Splice Strand
X 8689680..8689926 1..247 100 -> Plus
X 8694793..8695152 248..607 100 -> Plus
X 8695330..8695840 608..1118 100 -> Plus
X 8695916..8696052 1119..1255 100 -> Plus
X 8696135..8696853 1256..1974 100   Plus

LD36568.pep Sequence

Translation from 643 to 1395

> LD36568.pep
MPVQSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSK
RKQQPYIIGGALEQDMYVFEQLHFHWSDCDESGCEHTLEGMKYSMEAHAV
HYNSKYKDFTEAKNKPDGLAVVAFFIQACGEKDCPEFKKITEGIRIVQKI
HTSASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIYRTPIYV
SRGQVQVFRNLQSCPKDESKKIVNNYREIQRPHKDPEIFFARNTNPKSKL
*

LD36568.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19158-PA 363 GF19158-PA 114..363 1..250 1337 97.2 Plus
Dana\GF14257-PA 270 GF14257-PA 28..254 4..227 324 35.9 Plus
Dana\GF22952-PA 311 GF22952-PA 47..284 4..239 305 36.2 Plus
Dana\GF24805-PA 336 GF24805-PA 50..274 4..230 264 32.2 Plus
Dana\GF24807-PA 329 GF24807-PA 55..294 4..246 263 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18267-PA 250 GG18267-PA 1..250 1..250 1354 99.6 Plus
Dere\GG23881-PA 270 GG23881-PA 28..254 4..227 330 35.5 Plus
Dere\GG12140-PA 311 GG12140-PA 47..284 4..239 312 34.5 Plus
Dere\GG15564-PA 335 GG15564-PA 82..275 36..230 266 33.7 Plus
Dere\GG12312-PA 279 GG12312-PA 71..272 37..236 260 29.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24456-PA 250 GH24456-PA 1..250 1..250 1310 95.6 Plus
Dgri\GH11114-PA 270 GH11114-PA 28..254 4..227 324 34.6 Plus
Dgri\GH18947-PA 310 GH18947-PA 46..283 4..239 300 34.4 Plus
Dgri\GH16154-PA 337 GH16154-PA 46..283 4..239 270 32.5 Plus
Dgri\GH18011-PA 245 GH18011-PA 3..239 4..239 267 32 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-PE 250 CG11284-PE 1..250 1..250 1351 100 Plus
CG11284-PD 250 CG11284-PD 1..250 1..250 1351 100 Plus
CG11284-PC 250 CG11284-PC 1..250 1..250 1351 100 Plus
CG11284-PB 250 CG11284-PB 1..250 1..250 1351 100 Plus
CG11284-PA 250 CG11284-PA 1..250 1..250 1351 100 Plus
CAH1-PA 270 CG7820-PA 28..254 4..227 317 34.5 Plus
caix-PA 311 CG6074-PA 47..276 4..230 295 35.4 Plus
CG10899-PA 279 CG10899-PA 38..272 4..236 276 30.2 Plus
CG10899-PC 200 CG10899-PC 21..193 64..236 271 33.3 Plus
CAH2-PA 335 CG6906-PA 51..275 4..230 267 32.3 Plus
CAH2-PB 253 CG6906-PB 3..193 39..230 264 34.2 Plus
CG3669-PB 298 CG3669-PB 78..285 33..240 256 30 Plus
CG3940-PC 304 CG3940-PC 48..262 4..230 241 31.4 Plus
CG3940-PB 304 CG3940-PB 48..262 4..230 241 31.4 Plus
CG3940-PA 304 CG3940-PA 48..262 4..230 241 31.4 Plus
CG32698-PD 327 CG32698-PD 57..286 4..230 230 28.4 Plus
CG32698-PB 327 CG32698-PB 57..286 4..230 230 28.4 Plus
CG32698-PC 327 CG32698-PC 57..286 4..230 230 28.4 Plus
CG32698-PA 327 CG32698-PA 57..286 4..230 230 28.4 Plus
CG18673-PC 302 CG18673-PC 62..289 4..230 227 28.4 Plus
CG18672-PD 281 CG18672-PD 78..267 37..230 225 29.6 Plus
CG18672-PB 284 CG18672-PB 78..270 37..230 225 28.4 Plus
CG18672-PC 286 CG18672-PC 78..272 37..230 225 29.9 Plus
CG5379-PB 303 CG5379-PB 48..276 4..230 223 28.6 Plus
CG5379-PA 303 CG5379-PA 48..276 4..230 223 28.6 Plus
CG1402-PC 333 CG1402-PC 66..306 4..245 208 27.9 Plus
CG1402-PB 333 CG1402-PB 66..306 4..245 208 27.9 Plus
CG12309-PA 527 CG12309-PA 112..330 4..230 181 23.3 Plus
CG9235-PA 332 CG9235-PA 100..327 4..242 163 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15514-PA 250 GI15514-PA 1..250 1..250 1300 95.6 Plus
Dmoj\GI18237-PA 270 GI18237-PA 28..254 4..227 319 34.6 Plus
Dmoj\GI23275-PA 310 GI23275-PA 46..283 4..239 304 34.8 Plus
Dmoj\GI12426-PA 330 GI12426-PA 48..270 4..230 273 32.8 Plus
Dmoj\GI23611-PA 207 GI23611-PA 6..198 49..243 266 32.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12953-PA 250 GL12953-PA 1..250 1..250 1313 96.4 Plus
Dper\GL21230-PA 270 GL21230-PA 28..254 4..227 324 34.5 Plus
Dper\GL23614-PA 305 GL23614-PA 47..278 4..239 313 36.4 Plus
Dper\GL13738-PA 234 GL13738-PA 21..232 39..250 288 33.2 Plus
Dper\GL25159-PA 335 GL25159-PA 50..283 4..239 275 33.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10890-PA 250 GA10890-PA 1..250 1..250 1311 96.4 Plus
Dpse\GA20608-PA 270 GA20608-PA 28..254 4..227 324 34.5 Plus
Dpse\GA19339-PA 311 GA19339-PA 47..284 4..239 318 34.9 Plus
Dpse\GA27011-PB 304 GA27011-PB 91..302 39..250 284 32.7 Plus
Dpse\GA10625-PA 291 GA10625-PA 39..281 4..247 273 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21755-PA 250 GM21755-PA 1..250 1..250 1362 100 Plus
Dsec\GM15222-PA 270 GM15222-PA 28..254 4..227 328 35.9 Plus
Dsec\GM10133-PA 311 GM10133-PA 47..284 4..239 313 35.4 Plus
Dsec\GM23454-PA 279 GM23454-PA 38..272 4..236 277 30.2 Plus
Dsec\GM25332-PA 335 GM25332-PA 82..275 36..230 266 33.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16911-PA 250 GD16911-PA 1..250 1..250 1362 100 Plus
Dsim\CAH1-PA 270 GD23924-PA 28..254 4..227 328 35.9 Plus
Dsim\GD18095-PA 311 GD18095-PA 47..284 4..239 307 35.2 Plus
Dsim\GD18260-PA 279 GD18260-PA 38..272 4..236 275 30.2 Plus
Dsim\GD21568-PA 299 GD21568-PA 79..286 33..240 266 30 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19272-PA 250 GJ19272-PA 1..250 1..250 1318 96.4 Plus
Dvir\GJ18144-PA 270 GJ18144-PA 28..254 4..227 318 35 Plus
Dvir\GJ24133-PA 310 GJ24133-PA 46..283 4..239 305 34.8 Plus
Dvir\GJ23584-PA 246 GJ23584-PA 45..237 49..243 269 32.8 Plus
Dvir\GJ12322-PA 331 GJ12322-PA 46..277 4..240 257 32.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10304-PA 250 GK10304-PA 1..250 1..250 1297 94.8 Plus
Dwil\GK24229-PA 270 GK24229-PA 28..254 4..227 321 35 Plus
Dwil\GK12035-PA 312 GK12035-PA 48..285 4..239 314 35.1 Plus
Dwil\GK13282-PA 300 GK13282-PA 37..270 4..239 291 35.7 Plus
Dwil\GK25359-PA 327 GK25359-PA 57..308 4..248 252 29.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15797-PA 250 GE15797-PA 1..250 1..250 1357 99.6 Plus
Dyak\GE18682-PA 270 GE18682-PA 28..254 4..227 327 35.5 Plus
Dyak\GE10587-PA 311 GE10587-PA 47..284 4..239 315 35.8 Plus
Dyak\GE10928-PA 298 GE10928-PA 78..285 33..240 270 31 Plus
Dyak\GE10767-PA 282 GE10767-PA 38..272 4..236 263 29.4 Plus

LD36568.hyp Sequence

Translation from 643 to 1395

> LD36568.hyp
MPVQSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSK
RKQQPYIIGGALEQDMYVFEQLHFHWSDCDESGCEHTLEGMKYSMEAHAV
HYNSKYKDFTEAKNKPDGLAVVAFFIQACGEKDCPEFKKITEGIRIVQKI
HTSASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIYRTPIYV
SRGQVQVFRNLQSCPKDESKKIVNNYREIQRPHKDPEIFFARNTNPKSKL
*

LD36568.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11284-PE 250 CG11284-PE 1..250 1..250 1351 100 Plus
CG11284-PD 250 CG11284-PD 1..250 1..250 1351 100 Plus
CG11284-PC 250 CG11284-PC 1..250 1..250 1351 100 Plus
CG11284-PB 250 CG11284-PB 1..250 1..250 1351 100 Plus
CG11284-PA 250 CG11284-PA 1..250 1..250 1351 100 Plus