Clone LD36653 Report

Search the DGRC for LD36653

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:366
Well:53
Vector:pOT2
Associated Gene/TranscriptCG17985-RA
Protein status:LD36653.pep: gold
Preliminary Size:1544
Sequenced Size:1463

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1341 2001-01-01 Release 2 assignment
CG17985 2001-01-01 Release 2 assignment
CG17985 2001-07-04 Blastp of sequenced clone
CG17985 2003-01-01 Sim4 clustering to Release 3
CG17985 2008-04-29 Release 5.5 accounting
CG17985 2008-08-15 Release 5.9 accounting
CG17985 2008-12-18 5.12 accounting

Clone Sequence Records

LD36653.complete Sequence

1463 bp (1463 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051872

> LD36653.complete
CTTAGAACAAACTTTACACGTAAATAATCTAATTGCGTTAATTAACTGGC
TTGAGCTAAACAACGACGTGCGATTTGATCGAGGGAAGGAACGTAGTTGA
GATCTGGGCCAGGAAATCCCGACTAGGCAAGCAGGAAAACAATGCGTCGC
AATGCGCGCCAACAACAACACAATCAGGAAGAAATCGGCCCCGACGACGT
GGAAGACATCTTTGCCCGTCCCGCCTACGATGACGACGAGTTCGAAGATC
TGCTCCCTCTGGCCAGGAGGCCCAATGGCCACGCCCGACTCGGCCGCTAC
GAGAACACTCTGGAGGTAAAGGTCCAAGAGGGAGACACACTCCAGGCGCT
GGCCCTGCGCTTTCACTCCTCTGTGGCGGACATCAAGCGCCTGAACAAGA
TCGACCGCGAAAATGAAATCCACGCACATCGGGTTATTCGCATTCCGGTT
ACAGTGCACAACGTCCTGCTGGGCAACGGGGGCCTCGAAGCCCTTCCTGC
GGTCCACCGCAGCGGGAACAACAGTCCTAGACACAATATTGAGCGGGAAC
CAGCTCCCGAACGCAATCCCCTCGAGGATGCGCGGCAAATGCTGGATGAG
CGACTCCTGGTGGCGGCGGTAAATGCTTCAGGCGCCGTGGATCACGAGAA
ACCATCGACGAGCAGAGCTGCTGGACAATTCTACGAGGGAGCCCAGGGTG
CGCCGAATGACGAAGCCAATATGGAGCAACCCTACGAGGAAAATGCCGCT
CTGCTTAACCACATGGTGGACAGGCACGCTCCGCTAGTGCGTCCCATCCC
TGGACCCTCTTTGAGTGCCATCGACTGGTCCGGATCGGACTGCGACTTGT
CTTGGATATGTCTGCTGATCTTCATACTCGCCTTGTGTGTCGTCATACCC
TTGGTCTACGTCATCTACCTAGCAGAGCATCCACATCACAACCATAGTGC
CCAGTAGTTGGGTAATGTCTGCACCCGAAGTGGTCATCATTCCAAACGGC
ACCCCCTCACCCGGCACCCTGTCAATCTCTCAGATGAGCCTGGCGCATTT
CAAATGCAACCCCAGGCGACGGAATTTATTTTTATACCTATGCGCGTAAC
TTTGTATTGACTCTTGATAAAAAAAATAAGGTCTTTGTCGACAGAACTTT
TAAATTACCACGATTTGGGTGCTTCCCAGATGCATAGGCTTGTCTATGCG
CCACATAACTTCTGGCAGCACCAATTGCAGGATTCTAAGATCCGATTGTG
CTGTGAATATAAATCGTAACCCCGCCGTTTTGCTTTTCTATATGTTTTAT
TGAGTACAATTATGTAACATTTAAACTACAATAGTACGGGTAAGGTGTAA
CATTATTCAGCTGAAGTTGGGATAGTTTCTCTTACGCCAAAAAAGTACGT
AATACATATCTTAGAGCTAAATAAATAGTATCCATGGATATAAGAAAAAA
AAAAAAAAAAAAA

LD36653.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-RA 1485 CG17985-RA 45..1485 1..1441 7205 100 Plus
CG30492-RF 3515 CG30492-RF 3351..3515 1446..1282 825 100 Minus
CG30492-RB 3540 CG30492-RB 3376..3540 1446..1282 825 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3538932..3539662 1444..714 3640 99.9 Minus
chr2R 21145070 chr2R 3541785..3542344 715..156 2800 100 Minus
chr2R 21145070 chr2R 3542419..3542574 156..1 780 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7651623..7652355 1446..714 3665 100 Minus
2R 25286936 2R 7654478..7655037 715..156 2800 100 Minus
2R 25286936 2R 7655112..7655267 156..1 780 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7652822..7653554 1446..714 3665 100 Minus
2R 25260384 2R 7655677..7656236 715..156 2800 100 Minus
2R 25260384 2R 7656311..7656466 156..1 780 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:38:37 has no hits.

LD36653.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:39:42 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3542420..3542574 1..155 100   Minus
chr2R 3538932..3539660 716..1444 99 <- Minus
chr2R 3541785..3542344 156..715 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:10 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 1..816 142..957 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:59 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 1..816 142..957 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:16 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 1..816 142..957 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:29 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 1..816 142..957 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:37:00 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 1..816 142..957 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:59 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 45..1488 1..1444 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:58 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 45..1488 1..1444 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:16 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 36..1479 1..1444 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:29 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 45..1488 1..1444 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:37:00 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
CG17985-RA 36..1479 1..1444 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:42 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7651625..7652353 716..1444 100 <- Minus
2R 7654478..7655037 156..715 100 <- Minus
2R 7655113..7655267 1..155 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:42 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7651625..7652353 716..1444 100 <- Minus
2R 7654478..7655037 156..715 100 <- Minus
2R 7655113..7655267 1..155 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:42 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7651625..7652353 716..1444 100 <- Minus
2R 7654478..7655037 156..715 100 <- Minus
2R 7655113..7655267 1..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:16 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3539130..3539858 716..1444 100 <- Minus
arm_2R 3541983..3542542 156..715 100 <- Minus
arm_2R 3542618..3542772 1..155 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:43 Download gff for LD36653.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7656312..7656466 1..155 100   Minus
2R 7652824..7653552 716..1444 100 <- Minus
2R 7655677..7656236 156..715 100 <- Minus

LD36653.pep Sequence

Translation from 141 to 956

> LD36653.pep
MRRNARQQQHNQEEIGPDDVEDIFARPAYDDDEFEDLLPLARRPNGHARL
GRYENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIR
IPVTVHNVLLGNGGLEALPAVHRSGNNSPRHNIEREPAPERNPLEDARQM
LDERLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYEE
NAALLNHMVDRHAPLVRPIPGPSLSAIDWSGSDCDLSWICLLIFILALCV
VIPLVYVIYLAEHPHHNHSAQ*

LD36653.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11705-PA 272 GF11705-PA 1..272 1..271 1233 86 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10726-PA 271 GG10726-PA 1..271 1..271 1387 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20018-PA 275 GH20018-PA 1..265 1..262 997 71.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-PA 271 CG17985-PA 1..271 1..271 1426 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19198-PA 272 GI19198-PA 1..272 1..270 998 71.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20099-PA 272 GL20099-PA 1..272 1..271 1169 81.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14754-PA 272 GA14754-PA 1..272 1..271 1169 81.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20773-PA 271 GM20773-PA 1..271 1..271 1414 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10233-PA 271 GD10233-PA 1..271 1..271 1409 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20264-PA 273 GJ20264-PA 1..273 1..270 1043 74.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17804-PA 698 GK17804-PA 1..192 1..191 599 64.6 Plus
Dwil\GK17804-PA 698 GK17804-PA 626..697 199..269 341 84.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23772-PA 271 GE23772-PA 1..271 1..271 1395 97.8 Plus

LD36653.hyp Sequence

Translation from 141 to 956

> LD36653.hyp
MRRNARQQQHNQEEIGPDDVEDIFARPAYDDDEFEDLLPLARRPNGHARL
GRYENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIR
IPVTVHNVLLGNGGLEALPAVHRSGNNSPRHNIEREPAPERNPLEDARQM
LDERLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYEE
NAALLNHMVDRHAPLVRPIPGPSLSAIDWSGSDCDLSWICLLIFILALCV
VIPLVYVIYLAEHPHHNHSAQ*

LD36653.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17985-PA 271 CG17985-PA 1..271 1..271 1426 100 Plus