Clone LD36721 Report

Search the DGRC for LD36721

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:367
Well:21
Vector:pOT2
Associated Gene/TranscriptCG1275-RA
Protein status:LD36721.pep: gold
Preliminary Size:1752
Sequenced Size:1705

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1275 2001-01-01 Release 2 assignment
CG1275 2001-09-19 Blastp of sequenced clone
CG1275 2003-01-01 Sim4 clustering to Release 3
CG1275 2008-04-29 Release 5.5 accounting
CG1275 2008-08-15 Release 5.9 accounting
CG1275 2008-12-18 5.12 accounting

Clone Sequence Records

LD36721.complete Sequence

1705 bp (1705 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058661

> LD36721.complete
AAATCGAAGCGGTTAACAGATCGAGTTACAGTTTAAAACCCTTTGATAGT
GAAAGTTTGACCGTGTCCTTGACTTGCTGTACTAAATTAAGTATCAATGA
ATGTGCCGCTTTAAGTTTAACTTGTTAATAATAATGCTGACGTAGTAAAT
TCGCACAGCATTCCGCTCTCTTATGCTGCCAAATTATCTCTTTGTGTTTG
TGCCGTTTCTGTTTGTGTTCTTGCCTCTTCCGTTGAAGACATTTTGGAAA
TATTCCAAACAAAACACATTATTGGATTACTGATTCATTTCAAATCTTGC
ACAGACCATGTCGAAGGACGCGGACGTGGAGCAGGCGACCAAGCCGGAGA
GCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCACAGGCCGCC
GTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGTGACTAATGG
GGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACACCTGCGACAG
CAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAGTTGGCCACT
CCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAAGGCCAACAT
GGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTGT
GCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCAGCACTTC
GGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATCC
GCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTGA
TCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCAC
GCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGAC
GGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCAACATGTACT
CCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTCTCGCTGCAG
TATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAGGGAGAACTA
CAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCTTTGGATTCG
TTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAGGCCATCTTC
GCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGGTGTGTTGGC
CAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGGTTGTCTACC
TAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAGGACACGGCT
CTGCTGAACTCCAGTTCTGTCAACGAGTAAGGGCTATGCCCATGCCCCAA
ATCAACTGCAATGCTTACTTAAGCTAAAAACTGTGCACAAAACCAAACGA
AACCGAACCTGATCACACGGATGGTGCTTTCTTAGTGATGGAGATGGAGA
TTCGTCAAGATGAGTGTATTATCTGTAGCATGTACATAACCTAACGACTA
TGTATGACTCTGAATTATGAACATACGTATACTTTGGTCACCAGTTGTGC
AATGATTTCAGCGAGTGCTCAAATCATAACGTATTTAACCTCAAGAAAAA
CATTTGCTTTGAACTGTACGAATACATCTATATATGTGTGTTATATATGC
TTAAATAAATATATATATATATATATATCTATTAAAAAAAAAAAAAAAAA
AAAAA

LD36721.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RB 1779 CG1275-RB 97..1779 1..1683 8415 100 Plus
CG1275.c 1808 CG1275.c 434..1808 317..1691 6860 99.9 Plus
CG1275.a 1735 CG1275.a 361..1735 317..1691 6860 99.9 Plus
CG1275.c 1808 CG1275.c 137..433 1..297 1485 100 Plus
CG1275.a 1735 CG1275.a 64..360 1..297 1485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2252143..2252670 1683..1156 2610 99.6 Minus
chr3L 24539361 chr3L 2252728..2253091 1155..792 1790 99.5 Minus
chr3L 24539361 chr3L 2256514..2256810 297..1 1470 99.7 Minus
chr3L 24539361 chr3L 2254940..2255224 582..298 1425 100 Minus
chr3L 24539361 chr3L 2253176..2253388 791..579 1035 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2252736..2253271 1691..1156 2665 99.8 Minus
3L 28110227 3L 2253329..2253692 1155..792 1820 100 Minus
3L 28110227 3L 2257112..2257408 297..1 1485 100 Minus
3L 28110227 3L 2255538..2255822 582..298 1425 100 Minus
3L 28110227 3L 2253777..2253989 791..579 1065 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2252736..2253271 1691..1156 2665 99.8 Minus
3L 28103327 3L 2253329..2253692 1155..792 1820 100 Minus
3L 28103327 3L 2257112..2257408 297..1 1485 100 Minus
3L 28103327 3L 2255538..2255822 582..298 1425 100 Minus
3L 28103327 3L 2253777..2253989 791..579 1065 100 Minus
Blast to na_te.dros performed 2019-03-16 11:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9338..9467 406..530 126 61.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7902..8023 414..530 122 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2949..2989 459..499 115 75.6 Plus
X-element 4740 X-element ROXELEMENT 4740bp 2188..2231 233..276 112 72.7 Plus

LD36721.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:57:42 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2253176..2253385 582..791 99 <- Minus
chr3L 2252205..2252670 1156..1621 99 <- Minus
chr3L 2252728..2253091 792..1155 99 <- Minus
chr3L 2254941..2255224 298..581 100 <- Minus
chr3L 2256514..2256809 1..297 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:14 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 1..1023 308..1330 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:29 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 1..1023 308..1330 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:42:45 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 1..1023 308..1330 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:53 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 1..1023 308..1330 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:17 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 1..1023 308..1330 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:56 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 2..1666 1..1665 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:28 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 2..1684 1..1683 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:45 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 16..1698 1..1683 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:53 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 2..1666 1..1665 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:17 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 16..1698 1..1683 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:57:42 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2252744..2253271 1156..1683 100 <- Minus
3L 2253329..2253692 792..1155 100 <- Minus
3L 2253777..2253986 582..791 100 <- Minus
3L 2255539..2255822 298..581 100 <- Minus
3L 2257112..2257408 1..297 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:57:42 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2252744..2253271 1156..1683 100 <- Minus
3L 2253329..2253692 792..1155 100 <- Minus
3L 2253777..2253986 582..791 100 <- Minus
3L 2255539..2255822 298..581 100 <- Minus
3L 2257112..2257408 1..297 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:57:42 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2252744..2253271 1156..1683 100 <- Minus
3L 2253329..2253692 792..1155 100 <- Minus
3L 2253777..2253986 582..791 100 <- Minus
3L 2255539..2255822 298..581 100 <- Minus
3L 2257112..2257408 1..297 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:45 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2252744..2253271 1156..1683 100 <- Minus
arm_3L 2253329..2253692 792..1155 100 <- Minus
arm_3L 2253777..2253986 582..791 100 <- Minus
arm_3L 2255539..2255822 298..581 100 <- Minus
arm_3L 2257112..2257408 1..297 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:22 Download gff for LD36721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2252744..2253271 1156..1683 100 <- Minus
3L 2253329..2253692 792..1155 100 <- Minus
3L 2253777..2253986 582..791 100 <- Minus
3L 2255539..2255822 298..581 100 <- Minus
3L 2257112..2257408 1..297 100   Minus

LD36721.pep Sequence

Translation from 307 to 1329

> LD36721.pep
MSKDADVEQATKPESGVVQVEPAIPEQPQAAVPTTISTATTVIAVTNGEK
PAAATPATTATPATAEQVQPATTIAGIELATPTAAATSPPTGSGKANMDP
ALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAGTSNPGVEFNWHPLF
MTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHMGAFILTVIALKTVF
DSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGFVAFLAPGLRENYRI
AMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTPAYSTLPPAGVLANV
IGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSSSVNE*

LD36721.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24874-PA 336 GF24874-PA 1..336 1..340 1383 80 Plus
Dana\GF11463-PA 290 GF11463-PA 35..271 89..314 293 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14525-PA 254 GG14525-PA 6..254 92..340 1292 98 Plus
Dere\GG22561-PA 290 GG22561-PA 27..233 81..278 286 35 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16482-PA 342 GH16482-PA 1..342 1..340 1144 66.9 Plus
Dgri\GH19961-PA 287 GH19961-PA 24..241 81..289 316 35.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PA 340 CG1275-PA 1..340 1..340 1731 100 Plus
CG1275-PB 340 CG1275-PB 1..340 1..340 1731 100 Plus
CG1275-PC 254 CG1275-PC 6..254 92..340 1284 100 Plus
CG1275-PD 243 CG1275-PD 1..243 98..340 1253 100 Plus
nemy-PA 290 CG8776-PA 27..271 81..314 290 31.6 Plus
nemy-PL 256 CG8776-PL 25..237 105..314 281 33.6 Plus
nemy-PK 266 CG8776-PK 35..247 105..314 281 33.6 Plus
nemy-PB 267 CG8776-PB 35..248 105..314 281 33.3 Plus
nemy-PG 267 CG8776-PG 35..248 105..314 281 33.3 Plus
nemy-PE 267 CG8776-PE 35..248 105..314 281 33.3 Plus
nemy-PM 209 CG8776-PM 6..190 133..314 261 36.4 Plus
nemy-PC 210 CG8776-PC 6..191 133..314 261 36.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12153-PA 336 GI12153-PA 1..333 1..336 1186 68.9 Plus
Dmoj\GI19919-PA 286 GI19919-PA 23..240 81..289 323 36.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24623-PA 332 GL24623-PA 1..325 1..316 1176 73.7 Plus
Dper\GL17735-PA 291 GL17735-PA 28..234 81..278 288 34.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11787-PA 349 GA11787-PA 1..349 1..340 1292 74.6 Plus
Dpse\GA21312-PA 291 GA21312-PA 28..234 81..278 290 34.6 Plus
Dpse\GA21312-PB 267 GA21312-PB 56..210 126..278 273 40.8 Plus
Dpse\GA21312-PC 210 GA21312-PC 6..153 133..278 266 42 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14130-PA 254 GM14130-PA 6..254 92..340 1298 98.4 Plus
Dsec\GM20344-PA 290 GM20344-PA 27..233 81..278 288 34.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13402-PA 340 GD13402-PA 1..340 1..340 1702 96.5 Plus
Dsim\GD13398-PA 243 GD13398-PA 1..243 98..340 1264 98.4 Plus
Dsim\GD25823-PA 290 GD25823-PA 27..233 81..278 288 34.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13433-PA 338 GJ13433-PA 1..338 1..340 1144 67 Plus
Dvir\GJ15086-PA 287 GJ15086-PA 24..268 81..314 319 34.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12595-PA 355 GK12595-PA 1..355 1..340 1198 68.6 Plus
Dwil\GK21609-PA 289 GK21609-PA 78..232 126..278 273 39.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21717-PA 254 GE21717-PA 6..254 92..340 1290 97.6 Plus
Dyak\GE13431-PA 290 GE13431-PA 27..233 81..278 287 35 Plus

LD36721.hyp Sequence

Translation from 307 to 1329

> LD36721.hyp
MSKDADVEQATKPESGVVQVEPAIPEQPQAAVPTTISTATTVIAVTNGEK
PAAATPATTATPATAEQVQPATTIAGIELATPTAAATSPPTGSGKANMDP
ALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAGTSNPGVEFNWHPLF
MTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHMGAFILTVIALKTVF
DSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGFVAFLAPGLRENYRI
AMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTPAYSTLPPAGVLANV
IGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSSSVNE*

LD36721.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PA 340 CG1275-PA 1..340 1..340 1731 100 Plus
CG1275-PB 340 CG1275-PB 1..340 1..340 1731 100 Plus
CG1275-PC 254 CG1275-PC 6..254 92..340 1284 100 Plus
CG1275-PD 243 CG1275-PD 1..243 98..340 1253 100 Plus
nemy-PA 290 CG8776-PA 27..271 81..314 290 31.6 Plus