Clone LD36812 Report

Search the DGRC for LD36812

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:368
Well:12
Vector:pOT2
Associated Gene/Transcriptnct-RA
Protein status:LD36812.pep: gold
Preliminary Size:2454
Sequenced Size:2424

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7012 2001-01-01 Release 2 assignment
CG7012 2003-01-01 Sim4 clustering to Release 3
CG7012 2003-01-14 Blastp of sequenced clone
nct 2008-04-29 Release 5.5 accounting
nct 2008-08-15 Release 5.9 accounting
nct 2008-12-18 5.12 accounting

Clone Sequence Records

LD36812.complete Sequence

2424 bp (2424 high quality bases) assembled on 2003-01-14

GenBank Submission: BT003245

> LD36812.complete
ACGCAACACTGCAATTTCTGGACGCGATTTCGTGGGAATCTTCGATGGAA
ATGCGTCTGAATGCGGCTTCCATATGGCTGTTAATACTGTCGTATGGAGC
AACTATTGCTCAAGGAGAAAGAACCCGCGATAAGATGTACGAGCCCATTG
GAGGAGCTAGCTGTTTCCGACGGCTGAATGGCACCCATCAGACAGGCTGT
TCCTCAACCTACTCCGGTTCCGTGGGCGTACTACATCTAATAAACGTCGA
GGCCGACCTGGAATTTCTTCTTAGCAGCCCACCATCTCCACCTTACGCCC
CCATGATACCACCTCACCTGTTCACACGTAACAACCTGATGCGCCTAAAG
GAAGCCGGACCAAAGAACATTTCTGTGGTGCTGCTGATCAACCGCACGAA
CCAGATGAAGCAGTTCTCGCACGAACTCAACTGCCCCAATCAGTACAGCG
GCCTGAACAGCACCAGTGAGACCTGCGACGCCAGCAATCCAGCCAAAAAC
TGGAATCCCTGGGGCACTGGACTTCTGCACGAGGACTTTCCCTTTCCTAT
CTATTACATAGCCGATTTGGATCAGGTCACCAAGCTAGAGAAGTGCTTTC
AGGACTTTAACAACCATAACTACGAGACGCACGCGCTGCGTAGCTTGTGC
GCCGTCGAGGTCAAGTCCTTTATGTCCGCCGCTGTCAACACCGAGGTCTG
TATGCGCCGCACCAACTTCATCAATAATCTTGGAGGAAGCAAGTACTGCG
ATCCGCTCGAGGGACGGAATGTTTACGCCACCTTGTACCCCCGAAAGCCA
GCAATCGAAAACAACTTGGAGACAGTCCATACGAATGAAAAGTTCATATT
AGTAACCTGTCGCCTGGACACCACCACCATGTTCGATGGCGTCGGTCTTG
GAGCCATGGACTCCCTCATGGGATTTGCTGTTTTCACTCATGTGGCGTAT
CTATTAAAACAACTACTTCCGCCGCAAAGCAAAGACCTTCATAATGTCCT
CTTTGTGACTTTTAATGGCGAATCCTATGACTACATTGGTTCTCAAAGAT
TTGTATACGACATGGAGAAACTTCAATTTCCTACTGAATCCACAGGCACG
CCTCCGATTGCCTTTGACAATATTGACTTCATGCTGGACATCGGGACACT
GGATGACATATCGAATATTAAGCTGCATGCGTTAAATGGAACGACTTTGG
CTCAGCAAATTCTAGAGCGGCTAAATAACTATGCGAAGTCGCCACGCTAT
GGCTTTAACCTGAACATTCAGTCCGAGATGAGCGCTCACTTACCACCTAC
GTCGGCGCAATCATTTCTGCGACGTGATCCAAACTTCAATGCATTGATTC
TAAACGCTCGTCCAACGAACAAGTATTATCATTCCATATACGATGACGCG
GATAACGTGGACTTCACCTATGCGAACACAAGCAAGGATTTCACCCAGCT
GACGGAAGTTAATGACTTTAAAAGCTTGAACCCAGATTCACTGCAAATGA
AAGTGCGCAACGTTTCCTCTATTGTGGCCATGGCCCTATATCAGACAATA
ACTGGAAAGGAGTACACTGGCACCAAGGTGGCCAACCCTCTGATGGCAGA
TGAGTTCCTTTACTGTTTCCTGCAATCGGCGGACTGCCCACTCTTTAAGG
CCGCATCTTATCCGGGCAGTCAGCTCACCAATTTGCCTCCGATGCGCTAC
ATAAGCGTCTTGGGTGGCTCTCAAGAGTCGTCGGGCTATACGTATAGATT
GCTGGGCTATCTCCTGTCACAACTGCAGCCAGACATTCACAGAGATAACT
GCACCGACTTGCCGCTGCACTATTTCGCCGGATTCAACAATATCGGAGAG
TGTCGCCTCACCACGCAGAACTACAGTCACGCCCTGAGTCCAGCTTTTCT
TATTGATGGCTACGATTGGAGTTCCGGCATGTATTCCACTTGGACTGAAT
CCACCTGGTCACAGTTCAGTGCACGCATCTTCCTGCGCCCGTCCAATGTG
CACCAGGTCACAACTCTAAGCGTTGGCATAGTGGTGCTGATAATATCCTT
CTGTTTGGTGTATATAATCAGCTCACGATCGGAAGTCCTCTTTGAGGATT
TGCCGGCAAGCAATGCCGCATTATTTGGTTGATGTCACAACTGCCACAGC
GACGAAATCATCGCGTTCAGCAGCTCATTCCATAGATTTCTGCATGCATC
GCCGCGGCCGACAGCCTGTTAAATCTTCAAAGAATATCTGATCACGTGCC
GAAGATGATTGGTTGCTGAATATGATCTAAAACAAAAAACAGACTTAACA
AAGACACTAAAATGATATTCTAACTCGTCTTATTTAAAACATTAAGCAAA
CGTTTATTTATATGTATTTTTGTATTTTAAAGTAGTAAATTAGCTTCTAT
CAACTAAAAAAAAAAAAAAAAAAA

LD36812.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
nct-RA 2909 nct-RA 66..2471 1..2406 12030 100 Plus
nct.c 3079 nct.c 66..2262 1..2197 10985 100 Plus
nct-RC 2968 nct-RC 66..2262 1..2197 10985 100 Plus
nct.c 3079 nct.c 2322..2530 2198..2406 1045 100 Plus
nct-RC 2968 nct-RC 2322..2530 2198..2406 1045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20675923..20676725 894..1696 4015 100 Plus
chr3R 27901430 chr3R 20675172..20675863 205..896 3460 100 Plus
chr3R 27901430 chr3R 20676788..20677001 1696..1909 1055 99.5 Plus
chr3R 27901430 chr3R 20677061..20677272 1908..2119 1030 99.1 Plus
chr3R 27901430 chr3R 20677548..20677755 2198..2405 1025 99.5 Plus
chr3R 27901430 chr3R 20674791..20674898 1..108 540 100 Plus
chr3R 27901430 chr3R 20675023..20675119 108..204 470 99 Plus
chr3R 27901430 chr3R 20677411..20677488 2120..2197 390 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24852737..24853539 894..1696 4015 100 Plus
3R 32079331 3R 24851986..24852677 205..896 3460 100 Plus
3R 32079331 3R 24853602..24853815 1696..1909 1070 100 Plus
3R 32079331 3R 24853875..24854086 1908..2119 1060 100 Plus
3R 32079331 3R 24854362..24854570 2198..2406 1045 100 Plus
3R 32079331 3R 24851605..24851712 1..108 540 100 Plus
3R 32079331 3R 24851837..24851933 108..204 485 100 Plus
3R 32079331 3R 24854225..24854302 2120..2197 390 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24593568..24594370 894..1696 4015 100 Plus
3R 31820162 3R 24592817..24593508 205..896 3460 100 Plus
3R 31820162 3R 24594433..24594646 1696..1909 1070 100 Plus
3R 31820162 3R 24594706..24594917 1908..2119 1060 100 Plus
3R 31820162 3R 24595193..24595401 2198..2406 1045 100 Plus
3R 31820162 3R 24592436..24592543 1..108 540 100 Plus
3R 31820162 3R 24592668..24592764 108..204 485 100 Plus
3R 31820162 3R 24595056..24595133 2120..2197 390 100 Plus
Blast to na_te.dros performed 2019-03-16 19:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 6411..6470 2328..2389 116 67.7 Plus

LD36812.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:58:43 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20675024..20675119 109..204 98 -> Plus
chr3R 20674791..20674898 1..108 100 -> Plus
chr3R 20675172..20675861 205..894 100 -> Plus
chr3R 20675924..20676725 895..1696 100 -> Plus
chr3R 20676789..20677000 1697..1908 99 -> Plus
chr3R 20677062..20677272 1909..2119 99 -> Plus
chr3R 20677411..20677488 2120..2197 100 -> Plus
chr3R 20677548..20677755 2198..2405 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:16 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 1..2088 45..2132 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:55 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RC 1..2088 45..2132 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:26 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 1..2088 45..2132 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:46 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 1..2088 45..2132 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:48:05 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 1..2088 45..2132 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:50 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 19..2423 1..2405 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:55 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 34..2438 1..2405 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:26 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 5..2409 1..2405 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:48 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 19..2423 1..2405 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:05 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
nct-RA 5..2409 1..2405 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:43 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24854362..24854569 2198..2405 100   Plus
3R 24851605..24851712 1..108 100 -> Plus
3R 24851838..24851933 109..204 100 -> Plus
3R 24851986..24852675 205..894 100 -> Plus
3R 24852738..24853539 895..1696 100 -> Plus
3R 24853603..24853814 1697..1908 100 -> Plus
3R 24853876..24854086 1909..2119 100 -> Plus
3R 24854225..24854302 2120..2197 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:43 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24854362..24854569 2198..2405 100   Plus
3R 24851605..24851712 1..108 100 -> Plus
3R 24851838..24851933 109..204 100 -> Plus
3R 24851986..24852675 205..894 100 -> Plus
3R 24852738..24853539 895..1696 100 -> Plus
3R 24853603..24853814 1697..1908 100 -> Plus
3R 24853876..24854086 1909..2119 100 -> Plus
3R 24854225..24854302 2120..2197 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:43 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24854362..24854569 2198..2405 100   Plus
3R 24851605..24851712 1..108 100 -> Plus
3R 24851838..24851933 109..204 100 -> Plus
3R 24851986..24852675 205..894 100 -> Plus
3R 24852738..24853539 895..1696 100 -> Plus
3R 24853603..24853814 1697..1908 100 -> Plus
3R 24853876..24854086 1909..2119 100 -> Plus
3R 24854225..24854302 2120..2197 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:26 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20677327..20677434 1..108 100 -> Plus
arm_3R 20677560..20677655 109..204 100 -> Plus
arm_3R 20677708..20678397 205..894 100 -> Plus
arm_3R 20678460..20679261 895..1696 100 -> Plus
arm_3R 20679325..20679536 1697..1908 100 -> Plus
arm_3R 20679598..20679808 1909..2119 100 -> Plus
arm_3R 20679947..20680024 2120..2197 100 -> Plus
arm_3R 20680084..20680291 2198..2405 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:19:06 Download gff for LD36812.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24592817..24593506 205..894 100 -> Plus
3R 24593569..24594370 895..1696 100 -> Plus
3R 24594434..24594645 1697..1908 100 -> Plus
3R 24594707..24594917 1909..2119 100 -> Plus
3R 24595056..24595133 2120..2197 100 -> Plus
3R 24595193..24595400 2198..2405 100   Plus
3R 24592436..24592543 1..108 100 -> Plus
3R 24592669..24592764 109..204 100 -> Plus

LD36812.hyp Sequence

Translation from 2 to 2131

> LD36812.hyp
ATLQFLDAISWESSMEMRLNAASIWLLILSYGATIAQGERTRDKMYEPIG
GASCFRRLNGTHQTGCSSTYSGSVGVLHLINVEADLEFLLSSPPSPPYAP
MIPPHLFTRNNLMRLKEAGPKNISVVLLINRTNQMKQFSHELNCPNQYSG
LNSTSETCDASNPAKNWNPWGTGLLHEDFPFPIYYIADLDQVTKLEKCFQ
DFNNHNYETHALRSLCAVEVKSFMSAAVNTEVCMRRTNFINNLGGSKYCD
PLEGRNVYATLYPRKPAIENNLETVHTNEKFILVTCRLDTTTMFDGVGLG
AMDSLMGFAVFTHVAYLLKQLLPPQSKDLHNVLFVTFNGESYDYIGSQRF
VYDMEKLQFPTESTGTPPIAFDNIDFMLDIGTLDDISNIKLHALNGTTLA
QQILERLNNYAKSPRYGFNLNIQSEMSAHLPPTSAQSFLRRDPNFNALIL
NARPTNKYYHSIYDDADNVDFTYANTSKDFTQLTEVNDFKSLNPDSLQMK
VRNVSSIVAMALYQTITGKEYTGTKVANPLMADEFLYCFLQSADCPLFKA
ASYPGSQLTNLPPMRYISVLGGSQESSGYTYRLLGYLLSQLQPDIHRDNC
TDLPLHYFAGFNNIGECRLTTQNYSHALSPAFLIDGYDWSSGMYSTWTES
TWSQFSARIFLRPSNVHQVTTLSVGIVVLIISFCLVYIISSRSEVLFEDL
PASNAALFG*

LD36812.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
nct-PC 695 CG7012-PC 1..695 15..709 3673 100 Plus
nct-PA 695 CG7012-PA 1..695 15..709 3673 100 Plus
nct-PE 699 CG7012-PE 1..692 15..706 3657 100 Plus
nct-PD 692 CG7012-PD 1..692 15..706 3657 100 Plus

LD36812.pep Sequence

Translation from 44 to 2131

> LD36812.pep
MEMRLNAASIWLLILSYGATIAQGERTRDKMYEPIGGASCFRRLNGTHQT
GCSSTYSGSVGVLHLINVEADLEFLLSSPPSPPYAPMIPPHLFTRNNLMR
LKEAGPKNISVVLLINRTNQMKQFSHELNCPNQYSGLNSTSETCDASNPA
KNWNPWGTGLLHEDFPFPIYYIADLDQVTKLEKCFQDFNNHNYETHALRS
LCAVEVKSFMSAAVNTEVCMRRTNFINNLGGSKYCDPLEGRNVYATLYPR
KPAIENNLETVHTNEKFILVTCRLDTTTMFDGVGLGAMDSLMGFAVFTHV
AYLLKQLLPPQSKDLHNVLFVTFNGESYDYIGSQRFVYDMEKLQFPTEST
GTPPIAFDNIDFMLDIGTLDDISNIKLHALNGTTLAQQILERLNNYAKSP
RYGFNLNIQSEMSAHLPPTSAQSFLRRDPNFNALILNARPTNKYYHSIYD
DADNVDFTYANTSKDFTQLTEVNDFKSLNPDSLQMKVRNVSSIVAMALYQ
TITGKEYTGTKVANPLMADEFLYCFLQSADCPLFKAASYPGSQLTNLPPM
RYISVLGGSQESSGYTYRLLGYLLSQLQPDIHRDNCTDLPLHYFAGFNNI
GECRLTTQNYSHALSPAFLIDGYDWSSGMYSTWTESTWSQFSARIFLRPS
NVHQVTTLSVGIVVLIISFCLVYIISSRSEVLFEDLPASNAALFG*

LD36812.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16997-PA 693 GF16997-PA 3..693 6..695 3068 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11327-PA 698 GG11327-PA 1..698 1..695 3613 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19598-PA 702 GH19598-PA 1..702 1..692 2659 71 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Nct-PC 695 CG7012-PC 1..695 1..695 3673 100 Plus
Nct-PA 695 CG7012-PA 1..695 1..695 3673 100 Plus
Nct-PE 699 CG7012-PE 1..692 1..692 3657 100 Plus
Nct-PD 692 CG7012-PD 1..692 1..692 3657 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23992-PA 711 GI23992-PA 1..700 1..695 2761 73 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13937-PA 700 GL13937-PA 1..700 1..695 2926 79.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20030-PB 694 GA20030-PB 13..694 17..693 2855 79.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26636-PA 695 GM26636-PA 1..695 1..695 3686 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21138-PA 693 GD21138-PA 1..693 3..695 3700 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23626-PA 703 GJ23626-PA 1..703 1..692 2683 72.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22490-PA 709 GK22490-PA 1..709 1..695 2796 73.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23523-PA 695 GE23523-PA 1..695 3..695 3595 95.8 Plus