Clone LD36923 Report

Search the DGRC for LD36923

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:369
Well:23
Vector:pOT2
Associated Gene/TranscriptCG4455-RA
Protein status:LD36923.pep: gold
Preliminary Size:1621
Sequenced Size:1528

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4455 2001-01-01 Release 2 assignment
CG4455 2001-07-04 Blastp of sequenced clone
CG4455 2003-01-01 Sim4 clustering to Release 3
CG4455 2008-04-29 Release 5.5 accounting
CG4455 2008-08-15 Release 5.9 accounting
CG4455 2008-12-18 5.12 accounting

Clone Sequence Records

LD36923.complete Sequence

1528 bp (1528 high quality bases) assembled on 2001-07-04

GenBank Submission: AY059455

> LD36923.complete
CAACGCGAAAGGTTTTTGTCTTGCTTTCTTGTTGCTTTGTGTGATTCTCG
AGTCTCTGTTCTGCGTCTGCGTCCCGTTCTCGTGCCAACGAACTGATTTC
GCCCCGCGTTCGTGCTCAATCGTAAATTCGAAATAAATTAAAAATGTCTC
GCAGTTCGTACCTGTTGTGTGTGCTGTTTTTAGGCGCCAGCTGCTTGGTT
TTCAGTGCGAGTGCAGCGCGGAACAATCGAAGGGGTTACAAGGCCACGGA
ACCGCCCACCACCACCCAGCCCCCGCAGACGGCCAAGGAGTATCTGGATA
GTCGACCCGGAATCTCCACATTCGGCATCATCGCCATCATCTTCACCGTA
ATCGTTCTCTGCCTCGTCTTCTACTACGGCATCATTTGCTACCCCTTACT
CTGTCGCGATGACAAGAAATATCGGTTTATGGACGTATCTTCAACCATTA
CTGCCGCCACATCGCGCTCCATTCAATCCATAGAGAACTATCCCGACCAG
AAACACCATCATACGTTGGCCTGATTCGGGGTGTGGACACCTGGAGGATA
GTGGTTTAGTAGTACTTCAATTTAGTAACGCGAAAAAGACTTAAATGCCA
GCCAGAAACGAAAACCCATTAGTATGACTACAGATTTAGGTCCTAAGTTT
TAAAAAGAAATATCTCGAATTTTATCTCTATATACCCTTCGCATTACTGG
AAAGTAATTACTTTTTTAACATATTCGAAGTTCCGAAATGCTCTGAAAGA
ATTTTCCCATATTTTGACCGAATTTCGTAACAAAGCAGTACTACACATAG
CAATAACCAGTTGAGGAGTTCGCTGGAAAGGGAATTAATCATTCATAATT
GTAAATTGGGTTTCCTACGCATCCCCGACTGTTTCTTTATCTGTTGTTTC
TCTTAATCCCGGGCTCAACAAGTTTGGCCTGTCCTCTGGCCCTTTTTCCT
TGTCCCTCCTGCATCTTTGGCCTTTTTTTATTTCTTTTAATGCAGGTAGT
TTTAGCCGTTTACTCACCGCTTTGTTCTCTGTTCATTTTTTTTGTGGGAC
AGAGCCAAATTGTGGCAATTGAGTCACGTTGCCTGGTTGTTTCTTTCGAA
ATCCAAGGGAATTTAGCGATCTTTTTTATACCGTCTTCACGCAACCCAAT
TTGCATTAAGAATCCGAATCGTACTAACAGACGAACTCTTCGTGATGCCT
CGAATTTTGCACTACATTTTAAAACGCCGATTCCCGTCCCTTTATATACA
CAGGTTGTACTTAAATCGAAACCAAGTACTTAATAATTGTACCATGCCAA
TCATAGTTTAAGCGCCAATCTGCCGCCACGAATACATTTAAGAAATCTTC
AGTTTGTGCATTTAGACCAGCATGAGTATCCTTCTATATATTGTGTCAAA
AAAAACGTTTTTAGACGTTATATAGCATTAAGTCTATCAAAGTTTATATA
CAAATCTTTTTGGACATTTTTATGTGAGTTTTACATAAAATAAATGGTTT
TACCTCACCCAAAAAAAAAAAAAAAAAA

LD36923.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 1697 CG4455-RA 139..1650 1..1512 7560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16352041..16353369 182..1510 6645 100 Plus
chr2L 23010047 chr2L 16351782..16351965 1..184 920 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16353211..16354541 182..1512 6655 100 Plus
2L 23513712 2L 16352952..16353135 1..184 920 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16353211..16354541 182..1512 6655 100 Plus
2L 23513712 2L 16352952..16353135 1..184 920 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:03:55 has no hits.

LD36923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:04:57 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16352043..16353369 184..1510 100   Plus
chr2L 16351782..16351964 1..183 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:20 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 1..381 144..524 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:51 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 1..381 144..524 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:08:56 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 1..381 144..524 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:20 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 1..381 144..524 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:33 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 1..381 144..524 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:48 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 17..1526 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:51 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 17..1526 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:56 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 19..1528 1..1510 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:21 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 17..1526 1..1510 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:33 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 19..1528 1..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:57 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16352952..16353134 1..183 100 -> Plus
2L 16353213..16354539 184..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:57 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16352952..16353134 1..183 100 -> Plus
2L 16353213..16354539 184..1510 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:04:57 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16352952..16353134 1..183 100 -> Plus
2L 16353213..16354539 184..1510 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:56 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16352952..16353134 1..183 100 -> Plus
arm_2L 16353213..16354539 184..1510 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:34 Download gff for LD36923.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16352952..16353134 1..183 100 -> Plus
2L 16353213..16354539 184..1510 100   Plus

LD36923.pep Sequence

Translation from 143 to 523

> LD36923.pep
MSRSSYLLCVLFLGASCLVFSASAARNNRRGYKATEPPTTTQPPQTAKEY
LDSRPGISTFGIIAIIFTVIVLCLVFYYGIICYPLLCRDDKKYRFMDVSS
TITAATSRSIQSIENYPDQKHHHTLA*

LD36923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24948-PA 128 GF24948-PA 1..128 1..126 485 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22745-PA 126 GG22745-PA 1..126 1..126 649 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25187-PA 134 GH25187-PA 1..134 1..126 350 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-PA 126 CG4455-PA 1..126 1..126 657 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17256-PA 130 GI17256-PA 5..130 3..126 375 66.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19633-PA 127 GL19633-PA 1..127 1..126 473 75.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18197-PA 127 GA18197-PA 1..127 1..126 477 75.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18671-PA 126 GM18671-PA 1..126 1..126 646 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24653-PA 66 GD24653-PA 1..66 61..126 330 92.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22605-PA 116 GJ22605-PA 7..116 17..126 332 71.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24706-PA 135 GK24706-PA 1..125 1..120 372 72.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:58:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13104-PA 126 GE13104-PA 1..126 1..126 663 99.2 Plus

LD36923.hyp Sequence

Translation from 143 to 523

> LD36923.hyp
MSRSSYLLCVLFLGASCLVFSASAARNNRRGYKATEPPTTTQPPQTAKEY
LDSRPGISTFGIIAIIFTVIVLCLVFYYGIICYPLLCRDDKKYRFMDVSS
TITAATSRSIQSIENYPDQKHHHTLA*

LD36923.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-PA 126 CG4455-PA 1..126 1..126 657 100 Plus