Clone LD36945 Report

Search the DGRC for LD36945

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:369
Well:45
Vector:pOT2
Associated Gene/TranscriptCG16812-RA
Protein status:LD36945.pep: gold
Preliminary Size:1752
Sequenced Size:1719

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16812 2001-01-01 Release 2 assignment
CG16812 2001-09-19 Blastp of sequenced clone
CG16812 2003-01-01 Sim4 clustering to Release 3
CG16812 2008-04-29 Release 5.5 accounting
CG16812 2008-08-15 Release 5.9 accounting
CG16812 2008-12-18 5.12 accounting

Clone Sequence Records

LD36945.complete Sequence

1719 bp (1719 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058662

> LD36945.complete
GTAACTCTAAAATATATAAATAGTTTCGAGTGCAAAAAACGGAATTTATG
GGAATAAAATAAATAAATAGTAGCTGAATCGTGTAAGAATCTGTGCTTGC
CAGCACCAGAAATACGCAAAATGTCCAAGTCAAGCGCAGCACGCTGGGTA
AAATTCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGC
CCACGTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTA
ACAAGGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATC
GCCATCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACA
GGTCCTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAA
AACCCAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCG
AAACCTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGAC
ACTGCCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGG
AAAAATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTT
ACGCGCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTC
GGGCGAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGG
CCACCTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGC
GCTCTTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAA
AAACACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCA
AGAACTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAA
AAGGTCATGCTAGTTCACAAAGTGCCTCTTAAAAAAGGCGACGACGACGA
TGATAGCATGGACGATTTCGAAAGTGACGAAGAGGATTACATGTCCAGCG
GAGAAGATTTTGATATGGGAGCCGGCGAAAAGATTGTTAAGTTCGCCTCG
ACAGCGGAGGTTCGGGAAATCGTTCCCGAATCGGCATACAAAAATAGGCA
GGGCAAAAGTTTTGCGAATAATATTAAATCAAGGCTCGGAATGGTATCCA
AACTTCATGCCACGAAGAAGACATACAACCTAAAGGCATCGCCTGCAAGG
AAACCACAGGCTCGACTCAGTCCTGTTAAGGGCAAGACCATACGCATGCG
CAGCGACGAGCTGTTTAGCCGACAGGACACGGTGCCCGTCCACAGGAGGC
TTGGAAAAACCGCGACCTCCGCTCCCCTTAGAGCTCCACCAGCTCCGCCA
CATCGACAGCCGCGACCGGAGCCACAGAAGAAATATGTTCCGCCAAGGCG
CCATAACAGCATGAATGCTGGTCACAGCAGGCAGCGAGATCAATCTGGCT
CTGTTTTTGACCGCCTCGGCTTCAATAACTCTATGTAAAGTTTAAGTAAA
TGTGAGCCTCATTAAATTTGCCAGTACATGTTTGAATTAAAATAGAAGTT
GATTTGAAATGTATGAAATGAATGAGAAATGGCAGGATTTTTGATCCTGA
TCTCATTATTTCAGTTTAAACTCCTGATTGTTTTGAATACCCGATTAGTA
TCCATCGCAAGCTGTCAGAACATAAAACCAATTGATTAACTTTATGATGA
AAAAAAAAAAAAAAAAAAA

LD36945.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1800 CG16812-RA 57..1760 1..1704 8505 99.9 Plus
CG16812.b 1715 CG16812.b 136..1703 137..1704 7825 99.9 Plus
CG16812.a 1802 CG16812.a 237..1802 139..1704 7815 99.9 Plus
CG16812.a 1802 CG16812.a 49..187 1..139 695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13222021..13222608 557..1144 2940 100 Plus
chr2L 23010047 chr2L 13222666..13223221 1144..1699 2675 98.7 Plus
chr2L 23010047 chr2L 13221545..13221964 137..556 2100 100 Plus
chr2L 23010047 chr2L 13221285..13221423 1..139 695 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13223345..13223932 557..1144 2940 100 Plus
2L 23513712 2L 13223990..13224550 1144..1704 2790 99.8 Plus
2L 23513712 2L 13222869..13223288 137..556 2100 100 Plus
2L 23513712 2L 13222609..13222747 1..139 695 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13223345..13223932 557..1144 2940 100 Plus
2L 23513712 2L 13223990..13224550 1144..1704 2790 99.8 Plus
2L 23513712 2L 13222869..13223288 137..556 2100 100 Plus
2L 23513712 2L 13222609..13222747 1..139 695 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:20:46 has no hits.

LD36945.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:21:28 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13221285..13221423 1..139 100 -> Plus
chr2L 13221548..13221964 140..556 100 -> Plus
chr2L 13222021..13222608 557..1144 100 -> Plus
chr2L 13222667..13223221 1145..1699 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:21 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 1..1368 121..1488 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:30 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 1..1368 121..1488 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:26:12 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 1..1368 121..1488 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:54 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 1..1368 121..1488 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:36:00 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 1..1368 121..1488 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:58 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 49..1747 1..1699 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:30 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 49..1747 1..1699 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:12 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 23..1721 1..1699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:54 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 49..1747 1..1699 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:36:00 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 23..1721 1..1699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:28 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13222609..13222747 1..139 100 -> Plus
2L 13222872..13223288 140..556 100 -> Plus
2L 13223345..13223932 557..1144 100 -> Plus
2L 13223991..13224545 1145..1699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:28 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13222609..13222747 1..139 100 -> Plus
2L 13222872..13223288 140..556 100 -> Plus
2L 13223345..13223932 557..1144 100 -> Plus
2L 13223991..13224545 1145..1699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:28 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13222609..13222747 1..139 100 -> Plus
2L 13222872..13223288 140..556 100 -> Plus
2L 13223345..13223932 557..1144 100 -> Plus
2L 13223991..13224545 1145..1699 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:12 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13222872..13223288 140..556 100 -> Plus
arm_2L 13222609..13222747 1..139 100 -> Plus
arm_2L 13223345..13223932 557..1144 100 -> Plus
arm_2L 13223991..13224545 1145..1699 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:23 Download gff for LD36945.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13222872..13223288 140..556 100 -> Plus
2L 13223345..13223932 557..1144 100 -> Plus
2L 13223991..13224545 1145..1699 99   Plus
2L 13222609..13222747 1..139 100 -> Plus

LD36945.hyp Sequence

Translation from 120 to 1487

> LD36945.hyp
MSKSSAARWVKFFNAAGIPSPAAAGYAHVFVENRIQDDMLLDLNKEYLRE
MGITLMGDIIAILRHSKTVCEQNAREQVLTTEVVQSVVRPVSPKPKAPVA
TPKAKVYPPAKPARRVLPEHEGKYKVTLPSGTTERSKQILAKREKLYSDR
VSSSKKSDIFTRLHAEDEAQEGIVSSSGESSVRVHVAGASKTAATSSNNS
VFARLGGKQGALPEEFTSTREIKSILKNTHRTVGGGGGGGGVTKNSPIVK
AKKVAAVTQQKVMLVHKVPLKKGDDDDDSMDDFESDEEDYMSSGEDFDMG
AGEKIVKFASTAEVREIVPESAYKNRQGKSFANNIKSRLGMVSKLHATKK
TYNLKASPARKPQARLSPVKGKTIRMRSDELFSRQDTVPVHRRLGKTATS
APLRAPPAPPHRQPRPEPQKKYVPPRRHNSMNAGHSRQRDQSGSVFDRLG
FNNSM*

LD36945.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-PA 455 CG16812-PA 1..455 1..455 2317 100 Plus

LD36945.pep Sequence

Translation from 120 to 1487

> LD36945.pep
MSKSSAARWVKFFNAAGIPSPAAAGYAHVFVENRIQDDMLLDLNKEYLRE
MGITLMGDIIAILRHSKTVCEQNAREQVLTTEVVQSVVRPVSPKPKAPVA
TPKAKVYPPAKPARRVLPEHEGKYKVTLPSGTTERSKQILAKREKLYSDR
VSSSKKSDIFTRLHAEDEAQEGIVSSSGESSVRVHVAGASKTAATSSNNS
VFARLGGKQGALPEEFTSTREIKSILKNTHRTVGGGGGGGGVTKNSPIVK
AKKVAAVTQQKVMLVHKVPLKKGDDDDDSMDDFESDEEDYMSSGEDFDMG
AGEKIVKFASTAEVREIVPESAYKNRQGKSFANNIKSRLGMVSKLHATKK
TYNLKASPARKPQARLSPVKGKTIRMRSDELFSRQDTVPVHRRLGKTATS
APLRAPPAPPHRQPRPEPQKKYVPPRRHNSMNAGHSRQRDQSGSVFDRLG
FNNSM*

LD36945.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23064-PA 460 GF23064-PA 1..460 1..455 1670 76.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23824-PA 457 GG23824-PA 1..457 1..455 1956 89.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25088-PA 484 GH25088-PA 1..484 1..455 1323 62.3 Plus
Dgri\GH22259-PA 484 GH22259-PA 1..484 1..455 1323 62.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-PA 455 CG16812-PA 1..455 1..455 2317 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17609-PA 481 GI17609-PA 1..481 1..455 1364 61.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26307-PA 466 GL26307-PA 1..466 1..455 1665 72.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14162-PA 466 GA14162-PA 1..466 1..455 1666 72.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10268-PA 453 GM10268-PA 1..453 1..455 2020 94.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23873-PA 212 GD23873-PA 2..212 245..455 1088 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17954-PA 485 GJ17954-PA 1..485 1..455 1420 63.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14546-PA 474 GK14546-PA 1..474 1..455 1379 64.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18627-PA 456 GE18627-PA 1..456 1..455 1984 91.3 Plus