![]() | BDGP Sequence Production Resources |
Search the DGRC for LD37002
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 370 |
Well: | 2 |
Vector: | pOT2 |
Associated Gene/Transcript | Syx18-RA |
Protein status: | LD37002.pep: gold |
Preliminary Size: | 1512 |
Sequenced Size: | 1417 |
Gene | Date | Evidence |
---|---|---|
CG13626 | 2001-01-01 | Release 2 assignment |
CG13626 | 2001-07-04 | Blastp of sequenced clone |
CG13626 | 2003-01-01 | Sim4 clustering to Release 3 |
Syx18 | 2008-04-29 | Release 5.5 accounting |
Syx18 | 2008-08-15 | Release 5.9 accounting |
Syx18 | 2008-12-18 | 5.12 accounting |
1417 bp (1417 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051876
> LD37002.complete TGGATTTAAAAGTTAAATATTTCAAACTTAGTTATAGCAAATAGCTATGG ACATCACCCAGAGCTTCAAGGCCAGCGTAATGACGGTGCGCCTGCAGCGC AAGGCCGAGCTGGCCGGAAAGGCCAAGCCCGCCACAGTGCCGACAAAAAC TGGACCAATTGGCCCAAAGGATGACTTCGCCAAGCAGGCCAAGGAGGTGT GCAACAAGATCACTTCGCTGCGCAATGTGCTGATCGAGAACCGCACCGCC TACATGCGCATTGGCCAGCACCTCAAGTCCGCCGCACACATGACCGACGC GCAGCGGGATCTGATTGATCGCGAGTCGGAGAAGTTCGTCACCTTTTACA CGCAGCACCTGGCCAAGATGCGCAGCGATTGGAAGAGCGCCAAGCGGAAG CCGCAGGAGCGTCAGCACATCGACGCCGTGCTGGACCTGCTGGTCAGCTA TTTGCACAGCGTGGAACAGATCTATCTGGACCAAAAGAAGTACCGTGTGC AACACGAACTGGAAACCTATAGGCTGCTCAAGCTGGCGGCGGACAAAAAG AAGATACCAGTGCGTCCGGCGGGCAGCAACAGTGGCAAGCTGGGCAGGCG CCAGGTCAGCAACGATGACAGCGAAGCCACGAAGTCATCTTCACAAGCAA ATGGCAACCACGACGAGTCCGCCGACAATGACTGGAATAACGACGCCTGG GGCGACTGGGATGAAGACGAGGAAGGCGACGAGGTGGACGATCACGATGG CGAGAAGGGCAAGGAAGCCAATCAGGCCAATCAACACAAACCGCGTACGC GCAAACGAAGCAAAGCCAACAGATCGGATCTGAACAACTCATCCTCCAAG ATGGCTCTGGATGAGGAGCTCCAGCAGCAGCAGGAGGCCGACGATGACGA TCCCCTAAGCGCCGAGGATGTGCAGCTCTTCGAGGCGGAGAACGTACACA TCTACAACTTTCTGCAGGGCGTCTCCGAGGAGGTGGAGCAGATCGAAAAG AACGTGGTAGACATTGCCCAACTGCAGGACATTTTCACCGAAAAGGTCGC CATGCAACAGCACAATATCGACAGGATAGTTAGTGCCGTCGTGGGCACCA CGGAAAACGTCAAGGACGCCAACGAGCAAATCCGGCAGGCCACTCAACGA AATGCAGGACTACGCGTGTGGTCGCTGTTCTTCCTGCTGGTCATGTCGTT CTCCCTGCTCTTCTTGGACTGGTACTACGATTAAGTGAAGTCCCCAAATT TATGTGTAACCCACCCAATTTAGGGAATGATAAATGCAAAAATGTTTTGT TATCGTTTGATCGCACTAAAAGCATATTTTGTTTATTACATAATTTATAA ATAAAAGGAAAATATTTGTTTAGGCTATTCAACTGCCTTGTTTCAATTCA AAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20447050..20447403 | 1046..1399 | 100 | <- | Minus |
chr3R | 20447723..20448014 | 754..1045 | 100 | == | Minus |
chr3R | 20448118..20448767 | 1..650 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 1..1188 | 47..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 1..1188 | 47..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 1..1188 | 47..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 1..1188 | 47..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 1..1188 | 47..1234 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 62..1460 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 62..1460 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 44..1442 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 62..1460 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Syx18-RA | 44..1442 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24623802..24624155 | 1046..1399 | 100 | <- | Minus |
3R | 24624475..24625519 | 1..1045 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24623802..24624155 | 1046..1399 | 100 | <- | Minus |
3R | 24624475..24625519 | 1..1045 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24623802..24624155 | 1046..1399 | 100 | <- | Minus |
3R | 24624475..24625519 | 1..1045 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20449524..20449877 | 1046..1399 | 100 | <- | Minus |
arm_3R | 20450197..20451241 | 1..1045 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24364633..24364986 | 1046..1399 | 100 | <- | Minus |
3R | 24365306..24366350 | 1..1045 | 100 | Minus |
Translation from 46 to 1233
> LD37002.pep MDITQSFKASVMTVRLQRKAELAGKAKPATVPTKTGPIGPKDDFAKQAKE VCNKITSLRNVLIENRTAYMRIGQHLKSAAHMTDAQRDLIDRESEKFVTF YTQHLAKMRSDWKSAKRKPQERQHIDAVLDLLVSYLHSVEQIYLDQKKYR VQHELETYRLLKLAADKKKIPVRPAGSNSGKLGRRQVSNDDSEATKSSSQ ANGNHDESADNDWNNDAWGDWDEDEEGDEVDDHDGEKGKEANQANQHKPR TRKRSKANRSDLNNSSSKMALDEELQQQQEADDDDPLSAEDVQLFEAENV HIYNFLQGVSEEVEQIEKNVVDIAQLQDIFTEKVAMQQHNIDRIVSAVVG TTENVKDANEQIRQATQRNAGLRVWSLFFLLVMSFSLLFLDWYYD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20704-PA | 399 | GF20704-PA | 1..399 | 1..395 | 1553 | 75.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12334-PA | 395 | GG12334-PA | 1..395 | 1..395 | 1991 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19400-PA | 398 | GH19400-PA | 1..398 | 1..395 | 1489 | 73.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx18-PA | 395 | CG13626-PA | 1..395 | 1..395 | 2034 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22603-PA | 399 | GI22603-PA | 1..399 | 1..395 | 1526 | 73.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22230-PA | 396 | GL22230-PA | 1..396 | 1..395 | 1496 | 73.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12418-PA | 398 | GA12418-PA | 1..398 | 1..395 | 1507 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23475-PA | 395 | GM23475-PA | 1..395 | 1..395 | 2071 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18283-PA | 395 | GD18283-PA | 1..395 | 1..395 | 2075 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23849-PA | 394 | GJ23849-PA | 1..394 | 1..395 | 1548 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14303-PA | 400 | GK14303-PA | 1..400 | 1..395 | 1488 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Syx18-PA | 395 | GE10788-PA | 1..395 | 1..395 | 2003 | 94.4 | Plus |
Translation from 46 to 1233
> LD37002.hyp MDITQSFKASVMTVRLQRKAELAGKAKPATVPTKTGPIGPKDDFAKQAKE VCNKITSLRNVLIENRTAYMRIGQHLKSAAHMTDAQRDLIDRESEKFVTF YTQHLAKMRSDWKSAKRKPQERQHIDAVLDLLVSYLHSVEQIYLDQKKYR VQHELETYRLLKLAADKKKIPVRPAGSNSGKLGRRQVSNDDSEATKSSSQ ANGNHDESADNDWNNDAWGDWDEDEEGDEVDDHDGEKGKEANQANQHKPR TRKRSKANRSDLNNSSSKMALDEELQQQQEADDDDPLSAEDVQLFEAENV HIYNFLQGVSEEVEQIEKNVVDIAQLQDIFTEKVAMQQHNIDRIVSAVVG TTENVKDANEQIRQATQRNAGLRVWSLFFLLVMSFSLLFLDWYYD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Syx18-PA | 395 | CG13626-PA | 1..395 | 1..395 | 2034 | 100 | Plus |