Clone LD37010 Report

Search the DGRC for LD37010

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:370
Well:10
Vector:pOT2
Associated Gene/TranscriptAbi-RA
Protein status:LD37010.pep: gold
Preliminary Size:2518
Sequenced Size:2369

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9749 2001-01-01 Release 2 assignment
CG9749 2001-07-04 Blastp of sequenced clone
CG9749 2003-01-01 Sim4 clustering to Release 3
Abi 2008-04-29 Release 5.5 accounting
Abi 2008-08-15 Release 5.9 accounting
Abi 2008-12-18 5.12 accounting

Clone Sequence Records

LD37010.complete Sequence

2369 bp (2369 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051877

> LD37010.complete
GCCAGCGTTCTTTCTTTTTTCACGGAAAATGTAATGAAAAACTGCATTTA
ACTGCATTTAAAACGTAGCAACTAGCCCGGAAAAGCATCTGTTGTGCAAT
CGCATAGTCAATAAACATCCACACCCATGTTGACCGAAACCCCCATGGCC
AGCGAGAACATCATGGACGAACTAGCCTCTCTGATACGCACCGAGATCCC
CGATGGCCGCCAGAGTCTGCGGGACAGCTACACGAACCTGGAGCGGGTGG
CCGACTACTGCGAGGACACCTACTACCGCGCGGACAACAAGAAGGCGGCC
CTGGAGGCCACCAAGAACTACACCACCCAGTCGCTGGCCAGCGTGGCCTA
CCAGATTAACACGCTCGCCTATAGCTACATGCAGCTCCTCGAGCTTCAGG
CCCAGCAGCTCGGCGAGATGGAGTCCCAGATGAACCACATCGCCCAGACG
GTGCATATCCACAAGGAGAAGGTGGCCAGGAGAGAGATTGGCGTGCTTAC
GGCTAACAAGGTGAGCTCGCGCCAGTTTAAGATCGTGGCGCCCATCAATC
CGGAGAAGCCCATCAAGTATGTGCGCAAGCCCATCGACTACTCGATGTTG
GACGAGATTGGCCACGGCATTAACTCGGCCCAGCACTCGCAGGTGCGACA
GAAACATCGGGGCTCCAGCCATGGGTCCGTGCAATCCTTATTGCCGCCGT
CGGTGGGACCTCCGCCAACCACGAAGCCCCCAACTCCGCCGCAGATGTCG
CGAGCTGGGAACACTGGCACACTGGGCAAGTCGGTCAGCAATACCGGGAC
ACTGGGCAAGAGTTCGCGGGAGTACCGCACTCCGCCTGTGGTCAATCCAC
CACAGGTGCCATCGCACTACGCTCCCAACTATCCTATTGGGCATCCAAAG
CGAATGTCGACGGCTTCTTCAACGATGACTACCACCACCACAGGCGGCGG
AGCGGCGGGCAATGAACGAGCTGCTGGCTACAGTGCACTTCCGATGCCAC
CCAGCCAGCAGATAGCCACACATGTAAACCTGCCCTCCGCGGGCATGATG
CAATCGCTGCCACCACCGCCGCCCACTACGTACGACGATCGCAGCAGCAT
GCCACCAGCTCCTCCTTCACCACTTACGGTTTCGCAGCACGAGATGACCG
AGCAGAGTCACATTGGCATGCACACTTTGGGACGCAATATCAACAGGAAT
CACTTCAGCTTGAACTTCGCTCGTCCCGGCTCACAGTCGCCTCCCTTGCC
ACCTCCGCCGCCGCCGGAGGATGAGCATCAAGACTTCGGACGACCACGCA
CATCGACGGGACCGCAGCTGGCGCCCATAGTGCCCGAGGATCAGAACTTA
CCCGGCTGGGTGCCCAAGAACTTCATTGAGAAGGTGGTAGCCATTTACGA
CTACTATGCCGACAAGGACGACGAGCTGAGCTTCCAGGAAAGCTCAGTGC
TGTACGTGCTCAAGAAAAACGACGACGGCTGGTGGGAGGGCGTCATGGAT
GGTGTTACCGGTCTGTTTCCGGGCAACTACGTAGAGCCTTGTGTCTAAGC
CTCGCATCGATATTCTAAACATGCCAACCATTACAATAATCTGCATCATC
TGGTCTGTTCCAGTCCTCTGCTGCTTCTCAAGAGCTCCAAAAAATTTCAA
TTCAGTTATCGGAGAGTTAGACTGAGGACCGCAACAGACTCAGCTGACAA
TGACGATAAGATTTTGAGCATATTAATAAGGACAATTATACAATTACACA
CCTACACAAGCACAGCAGGCCAGAGAAAGCGAATTCCATTAGCATCAGCC
AACCGCATTTAGTCTAATATAAACGAGCACACAAACACACAGAATCCACG
GGCTAGGGATACCGCTTGCTGCCCAACTAAAACTATTTACACTTTAGTAG
CCGAAAACGATGCAAGAAGGGGAAAGTGAAACCGGATACCCGTGAATAAC
TTATGCGATATTATAAAACTGTTCCACAACCGTAGACGAATTCTGTCCTG
CTCCTGCCGCCAATCCAAATACTTTAAATATTTGCTCACAGTTTTATCAA
GCGATTTCTGTTTGCCTTGCGCTTTGATATGCCCGGCTATTATACACCAA
TACTACCCGAACCTATGCCCCCAGCAATACTGTAGGTTATATAAATTTCA
GTTAGCATTTAATACTTAAGTATTGGCCAGTTGGAACTTTTGTTTATACT
TTTACGAACCGCAACGATGTCTTTTTTTTGCGAACGTTTAGTTAAAATGG
AATTGCCAGCAAAGGAATCAAATTAAATTAAACAATACAAGTACACATAC
GCTCTATATGGTAAAAATAATAGCTAATAAAAATTTCAATTACTAAACCG
CAAAAAAAAAAAAAAAAAA

LD37010.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
Abi-RA 2428 Abi-RA 75..2427 1..2353 11765 100 Plus
Abi-RB 2542 Abi-RB 305..2542 116..2353 11190 100 Plus
Abi.a 2307 Abi.a 70..2307 116..2353 11190 100 Plus
Abi-RB 2542 Abi-RB 25..139 1..115 575 100 Plus
Abi.a 2307 Abi.a 40..69 1..30 150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9944104..9945068 2351..1384 4640 98.9 Minus
chr3R 27901430 chr3R 9945687..9946311 1105..481 3020 98.9 Minus
chr3R 27901430 chr3R 9946601..9946967 482..116 1805 99.5 Minus
chr3R 27901430 chr3R 9945124..9945313 1384..1195 920 98.9 Minus
chr3R 27901430 chr3R 9947133..9947246 115..2 570 100 Minus
chr3R 27901430 chr3R 9945534..9945625 1197..1106 445 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14119260..14120229 2353..1384 4850 100 Minus
3R 32079331 3R 14120847..14121471 1105..481 3125 100 Minus
3R 32079331 3R 14121746..14122112 482..116 1835 100 Minus
3R 32079331 3R 14120285..14120474 1384..1195 950 100 Minus
3R 32079331 3R 14122278..14122392 115..1 575 100 Minus
3R 32079331 3R 14120694..14120785 1197..1106 460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13860091..13861060 2353..1384 4850 100 Minus
3R 31820162 3R 13861678..13862302 1105..481 3125 100 Minus
3R 31820162 3R 13862577..13862943 482..116 1835 100 Minus
3R 31820162 3R 13861116..13861305 1384..1195 950 100 Minus
3R 31820162 3R 13863109..13863223 115..1 575 100 Minus
3R 31820162 3R 13861525..13861616 1197..1106 460 100 Minus
Blast to na_te.dros performed 2019-03-15 13:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 886..982 1238..1335 126 65.3 Plus

LD37010.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:45:29 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9944104..9945067 1385..2351 98 <- Minus
chr3R 9945124..9945311 1197..1384 98 <- Minus
chr3R 9945535..9945625 1106..1196 98 <- Minus
chr3R 9945687..9946309 483..1105 98 <- Minus
chr3R 9946601..9946967 116..482 99 <- Minus
chr3R 9947133..9947246 1..115 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:24 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RB 1..1422 127..1548 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:23 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RB 1..1422 127..1548 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:11:19 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RA 1..1422 127..1548 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:47 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RB 1..1422 127..1548 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:40:02 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RA 1..1422 127..1548 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:14:28 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RA 29..2379 1..2351 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:23 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RA 29..2379 1..2351 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:11:19 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RA 29..2379 1..2351 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:48 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RA 29..2379 1..2351 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:40:02 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
Abi-RA 29..2379 1..2351 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:29 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14121746..14122112 116..482 100 <- Minus
3R 14122278..14122392 1..115 100   Minus
3R 14119262..14120228 1385..2351 100 <- Minus
3R 14120285..14120472 1197..1384 100 <- Minus
3R 14120695..14120785 1106..1196 100 <- Minus
3R 14120847..14121469 483..1105 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:29 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14121746..14122112 116..482 100 <- Minus
3R 14122278..14122392 1..115 100   Minus
3R 14119262..14120228 1385..2351 100 <- Minus
3R 14120285..14120472 1197..1384 100 <- Minus
3R 14120695..14120785 1106..1196 100 <- Minus
3R 14120847..14121469 483..1105 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:29 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14121746..14122112 116..482 100 <- Minus
3R 14122278..14122392 1..115 100   Minus
3R 14119262..14120228 1385..2351 100 <- Minus
3R 14120285..14120472 1197..1384 100 <- Minus
3R 14120695..14120785 1106..1196 100 <- Minus
3R 14120847..14121469 483..1105 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:11:19 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9944984..9945950 1385..2351 100 <- Minus
arm_3R 9946007..9946194 1197..1384 100 <- Minus
arm_3R 9946417..9946507 1106..1196 100 <- Minus
arm_3R 9946569..9947191 483..1105 100 <- Minus
arm_3R 9947468..9947834 116..482 100 <- Minus
arm_3R 9948000..9948114 1..115 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:03 Download gff for LD37010.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13860093..13861059 1385..2351 100 <- Minus
3R 13861116..13861303 1197..1384 100 <- Minus
3R 13861526..13861616 1106..1196 100 <- Minus
3R 13861678..13862300 483..1105 100 <- Minus
3R 13862577..13862943 116..482 100 <- Minus
3R 13863109..13863223 1..115 100   Minus

LD37010.hyp Sequence

Translation from 126 to 1547

> LD37010.hyp
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV*

LD37010.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Abi-PF 473 CG9749-PF 1..473 1..473 2513 100 Plus
Abi-PB 473 CG9749-PB 1..473 1..473 2513 100 Plus
Abi-PA 473 CG9749-PA 1..473 1..473 2513 100 Plus
Abi-PD 477 CG9749-PD 1..477 1..473 2498 99.2 Plus
Abi-PE 472 CG9749-PE 1..472 1..473 2497 99.8 Plus

LD37010.pep Sequence

Translation from 126 to 1547

> LD37010.pep
MLTETPMASENIMDELASLIRTEIPDGRQSLRDSYTNLERVADYCEDTYY
RADNKKAALEATKNYTTQSLASVAYQINTLAYSYMQLLELQAQQLGEMES
QMNHIAQTVHIHKEKVARREIGVLTANKVSSRQFKIVAPINPEKPIKYVR
KPIDYSMLDEIGHGINSAQHSQVRQKHRGSSHGSVQSLLPPSVGPPPTTK
PPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQVPSHYAP
NYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHV
NLPSAGMMQSLPPPPPTTYDDRSSMPPAPPSPLTVSQHEMTEQSHIGMHT
LGRNINRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAP
IVPEDQNLPGWVPKNFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDD
GWWEGVMDGVTGLFPGNYVEPCV*

LD37010.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18788-PA 472 GF18788-PA 1..472 1..473 2448 97.5 Plus
Dana\GF24142-PA 1192 GF24142-PA 1032..1091 414..473 171 45 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21491-PA 473 GG21491-PA 1..473 1..473 2512 99.6 Plus
Dere\GG21524-PA 1102 GG21524-PA 1029..1088 414..473 169 45 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19698-PA 460 GH19698-PA 1..460 13..473 2373 97 Plus
Dgri\GH13222-PA 1214 GH13222-PA 1045..1104 414..473 169 45 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Abi-PF 473 CG9749-PF 1..473 1..473 2513 100 Plus
Abi-PB 473 CG9749-PB 1..473 1..473 2513 100 Plus
Abi-PA 473 CG9749-PA 1..473 1..473 2513 100 Plus
Abi-PD 477 CG9749-PD 1..477 1..473 2498 99.2 Plus
Abi-PE 472 CG9749-PE 1..472 1..473 2497 99.8 Plus
Abi-PC 472 CG9749-PC 1..472 1..473 2497 99.8 Plus
Cortactin-PD 559 CG3637-PD 290..553 196..470 187 28.4 Plus
Cortactin-PC 559 CG3637-PC 290..553 196..470 187 28.4 Plus
Cortactin-PB 559 CG3637-PB 290..553 196..470 187 28.4 Plus
Cortactin-PA 559 CG3637-PA 290..553 196..470 187 28.4 Plus
Dap160-PH 1005 CG1099-PH 941..1000 414..473 165 45 Plus
Dap160-PB 1014 CG1099-PB 941..1000 414..473 165 45 Plus
Dap160-PG 1088 CG1099-PG 1024..1083 414..473 165 45 Plus
Dap160-PC 1096 CG1099-PC 1023..1082 414..473 165 45 Plus
Dap160-PA 1097 CG1099-PA 1024..1083 414..473 165 45 Plus
Dap160-PD 1190 CG1099-PD 1020..1079 414..473 165 45 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24554-PA 472 GI24554-PA 1..472 1..473 2435 97 Plus
Dmoj\GI18101-PA 1114 GI18101-PA 1041..1100 414..473 171 45 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23309-PA 461 GL23309-PA 1..461 13..473 2389 98.1 Plus
Dper\GL25867-PA 1126 GL25867-PA 1053..1112 414..473 167 43.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22007-PA 473 GA22007-PA 1..473 1..473 2446 97.7 Plus
Dpse\GA10691-PA 1126 GA10691-PA 1053..1112 414..473 167 43.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25884-PA 467 GM25884-PA 1..467 7..473 2491 100 Plus
Dsec\GM23277-PA 1100 GM23277-PA 1027..1086 414..473 169 45 Plus
Dsec\GM15108-PA 549 GM15108-PA 467..543 392..470 152 41.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20455-PA 473 GD20455-PA 1..473 1..473 2521 100 Plus
Dsim\GD21654-PA 606 GD21654-PA 533..592 414..473 167 45 Plus
Dsim\GD20012-PA 549 GD20012-PA 467..543 392..470 153 41.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22620-PA 467 GJ22620-PA 1..467 1..473 2391 96 Plus
Dvir\GJ16288-PA 1135 GJ16288-PA 1062..1121 414..473 169 45 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10907-PA 464 GK10907-PA 1..464 1..473 1930 92 Plus
Dwil\GK21118-PA 1126 GK21118-PA 1062..1121 414..473 169 45 Plus
Dwil\GK13516-PA 557 GK13516-PA 466..554 373..470 154 38.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10059-PA 473 GE10059-PA 1..473 1..473 2517 99.8 Plus
Dyak\GE13003-PA 1102 GE13003-PA 1029..1088 414..473 168 45 Plus