Clone LD37137 Report

Search the DGRC for LD37137

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:371
Well:37
Vector:pOT2
Associated Gene/TranscriptGint3-RB
Protein status:LD37137.pep: gold
Preliminary Size:2664
Sequenced Size:2413

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5469 2001-01-01 Release 2 assignment
CG5469 2001-11-09 Blastp of sequenced clone
CG5469 2003-01-01 Sim4 clustering to Release 3
Gint3 2008-04-29 Release 5.5 accounting
CG42306 2008-08-15 Release 5.9 accounting
Gint3 2008-08-15 Release 5.9 accounting
CG42306 2008-12-18 5.12 accounting
Gint3 2008-12-18 5.12 accounting

Clone Sequence Records

LD37137.complete Sequence

2413 bp (2413 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069610

> LD37137.complete
CCAAGCAGCCACAAAACCTAAAACCTAAGAGAGAAGCAACACACCGAGAT
GGGGGCCATCTCCGCATCCACGTAGCCAGTGGAGCGCGAGGCATGGCGCA
TACGGAAGCCATAGGCTGCAAGAGATTTCTCTTCTTTGGCCTCCGCTCGA
CTTTCGGCTGGCTGTTGAACCCGCAGCGCATCGCTGGAGCGTGATCTCCC
CGCCCCCAGATAGGCATCCCCAATCTCTCACTCTGCTACCTACTTGGCCG
AAAAACATACTCAAGGATGCCATCGAAAATCAATCGCAAAATATGCGAAA
GGAAGAGAGATGCCCAGGCTCCAATCGCCGAAAATTACAGGAAGCAAAAG
CACTTGGCGAAACGATCGAAAATCATTCAATTACGACAGCTGGCCCTGCA
TATAAAAAATGGGCGTGTGCTCCACAAAATATCATTATCCCGTAGGTATT
TACACACAGACCAGCAACGGGCACACCAGCAAAGAAAAAAGTGTTGACGA
AATTATTATAATGCTGCGAATATAAACAAAGGATTGCGTTGAAAACGTAT
TAAATACGATCTTTGGCACTTACCAATCAGGCAATGAGTTTCAATTTCTA
CGTGGAATCGTTCAATTCAACGTTGCAGTCGATTGCGCGACAAGTGGAGC
AATTTGCTGGCGTTGCACTGACGGCAGCCGTCGATCTGCGCGGAAATCTG
GAATCTTTGACCGGTGACTTTCGTTGGGAAAACGGACCCATTGCCTTCAC
CGATCTGCAGGCGACACTGCTGAAGGTGCTTATCGTGCTGCTTCTGGGCA
CCTGCGTACTAGCCGGCTATTCGTGGTCCATTTACGGCAAAGTCATTACG
GAGAAGTTTGTCAGGCCAAGCACGCTCAAGGAAATCGAGGAGCTTAAATT
GTCGGTGGCCAAGTTGAAGCTGCCCAAGGAACACTCGCCGCGCATCTAGA
AACCATGTCCAAGATTAAGAAGTTCTTTTCGCGGAAGAAGGCGGAGGCTG
CCTTTAAGCTCAATTTAACTGGCAGCGGCATGGGCACTGGCCACAAGCTG
AATTCCCCCAAACAGGAGACTCCTTCAAGTAGTTCCCGCCAAAAGTATGA
GGCCTATGTGCCACCAAAGCGAAATGAAATAAGTAACGAGGCCAGGGCAG
CTGCCAGTGCGGCACTGGCGCGCATTGACAAGAAAACATCCAGGGAATTC
AATACCTCGCTGTCGGCAGTGAAGGCACAGGCTAAAAGAGAGCTGGAGGC
AGAGCGTCGCCAGAGAGAGGAAGCCATGGGCACGCCATCAACGACCAGCA
CATCCACATCGGCTTCCGGCGGCGACACTCGCAACCTGGCCTGCGAAGGC
GTCTTCTTCCGCTGCCCCCTAATCAGCGAGGAGATTCTACCCAAGAGCGT
GTGGAAGGTTCGCATCAAAGAGTTCCTCTACCAGCAGCTGGAGGCAGATC
GCGGCCTCACCGCCTGCCTGATCATCCACAATTGCAATGTTAAGGAGAAG
GCCGACGAGTGCATTGCCACGCTAATCCGATATCTGGAGAATCTTATCAA
GAATCCCGAGGAGGAGAAGTTCTGCAAGATACGGATGTCCAACAAAATCT
TCAGCGAAAAGGTGCGCTACGTGGAGGGTGCCCTGGATGTTCTGCAAGCA
GCGGGCTTCAACGAGGTCCAGATCGATGGCGAACCCTTCCTTTTGTGGAC
CAAGGAGCAGACGGAGAAGGATCTCGACTTGCCCACACTAGTGGAAGCTC
TCAAGAGCTCGGAGATTATTCCCCTGGAGCTGGATCGCAACATTAAGGTC
CTACTTCCATCGCAGGCATGTCGTGTCGCCCTCCCCGACGAGTTTTATCG
CCTGTCGCCGGAGGAGATCAAGAAAGAGCAACAGCTGCGATCCGAGGCCA
TTGCCCAGTCACAGATGCTGCGGACAAAGGCGATGCGGGAACGCGAGGAG
CAGCGCAATTTGCGCATGTATCGATACGCTTTAGTCAGGGTTAAATTTCC
CAATGGACTCTTTATACAAGGCACTTTCAATGTGTACGAAAAAATATCCG
ATGTGTTCGAGTTTGTCCAATCTTGCCTGGCGGACGAAAGCCTGGATTTT
AGCTTGGTGTCCAACAGCGATGGCAAACTGGGCGATGAGGACTTGGAAAA
GACACTATATGACTGCAAACTCATTCCGAACACTCTGCTGCTGTTTAGCG
CCAATGATACACCCGCTCCTTTGCAAACGGATATAAACTACTTAAAGGAA
GACCTTCTAATGCTGGTGCAGGCTATGTAGAAGTGCTTTAACCCATATAT
TCAGCGGTATTTGTCCCTTATATTATAACAGAGCTGTTGTTATTTATTAC
TTTCAAATCTATTATTCAAAATCAATTATAAACGCACTTTACACAAAAAA
AAAAAAAAAAAAA

LD37137.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
Gint3-RD 2402 Gint3-RD 1..2402 1..2402 11995 99.9 Plus
CG42306-RA 2402 CG42306-RA 1..2402 1..2402 11995 99.9 Plus
Gint3-RB 2051 Gint3-RB 109..2051 460..2402 9700 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14546045..14547058 2020..1007 5070 100 Minus
chr2R 21145070 chr2R 14547320..14547751 870..439 2160 100 Minus
chr2R 21145070 chr2R 14548237..14548674 438..1 2130 99.1 Minus
chr2R 21145070 chr2R 14545549..14545774 2394..2169 1130 100 Minus
chr2R 21145070 chr2R 14545834..14545982 2168..2020 745 100 Minus
chr2R 21145070 chr2R 14547112..14547250 1008..870 695 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18658919..18659932 2020..1007 5070 100 Minus
2R 25286936 2R 18661111..18661548 438..1 2190 100 Minus
2R 25286936 2R 18660194..18660625 870..439 2160 100 Minus
2R 25286936 2R 18658414..18658648 2403..2169 1160 99.6 Minus
2R 25286936 2R 18658708..18658856 2168..2020 745 100 Minus
2R 25286936 2R 18659986..18660124 1008..870 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18660118..18661131 2020..1007 5070 100 Minus
2R 25260384 2R 18662310..18662747 438..1 2190 100 Minus
2R 25260384 2R 18661393..18661824 870..439 2160 100 Minus
2R 25260384 2R 18659613..18659847 2403..2169 1160 99.5 Minus
2R 25260384 2R 18659907..18660055 2168..2020 745 100 Minus
2R 25260384 2R 18661185..18661323 1008..870 695 100 Minus
Blast to na_te.dros performed 2019-03-15 13:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 2518..2600 308..224 123 65.5 Minus

LD37137.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:45:31 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14547112..14547250 870..1008 100 <- Minus
chr2R 14545549..14545774 2169..2394 100 <- Minus
chr2R 14545834..14545982 2020..2168 100 <- Minus
chr2R 14546046..14547056 1009..2019 100 <- Minus
chr2R 14547321..14547751 439..869 100 <- Minus
chr2R 14548237..14548674 1..438 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:29 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 1..1326 955..2280 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:37 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 1..1326 955..2280 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:11:23 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RB 1..1326 955..2280 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:16 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 1..1326 955..2280 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:40:07 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RD 1..1326 955..2280 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:26 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
CG42306-RA 1..2394 1..2394 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:37 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
CG42306-RA 1..2394 1..2394 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:11:23 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
CG42306-RA 1..2394 1..2394 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:16 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
CG42306-RA 1..2394 1..2394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:40:07 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RD 1..2394 1..2394 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:31 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18658423..18658648 2169..2394 100 <- Minus
2R 18658708..18658856 2020..2168 100 <- Minus
2R 18658920..18659930 1009..2019 100 <- Minus
2R 18659986..18660124 870..1008 100 <- Minus
2R 18660195..18660625 439..869 100 <- Minus
2R 18661111..18661548 1..438 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:31 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18658423..18658648 2169..2394 100 <- Minus
2R 18658708..18658856 2020..2168 100 <- Minus
2R 18658920..18659930 1009..2019 100 <- Minus
2R 18659986..18660124 870..1008 100 <- Minus
2R 18660195..18660625 439..869 100 <- Minus
2R 18661111..18661548 1..438 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:31 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18658423..18658648 2169..2394 100 <- Minus
2R 18658708..18658856 2020..2168 100 <- Minus
2R 18658920..18659930 1009..2019 100 <- Minus
2R 18659986..18660124 870..1008 100 <- Minus
2R 18660195..18660625 439..869 100 <- Minus
2R 18661111..18661548 1..438 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:11:23 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14545928..14546153 2169..2394 100 <- Minus
arm_2R 14546213..14546361 2020..2168 100 <- Minus
arm_2R 14546425..14547435 1009..2019 100 <- Minus
arm_2R 14547491..14547629 870..1008 100 <- Minus
arm_2R 14547700..14548130 439..869 100 <- Minus
arm_2R 14548616..14549053 1..438 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:36:55 Download gff for LD37137.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18659907..18660055 2020..2168 100 <- Minus
2R 18659622..18659847 2169..2394 100 <- Minus
2R 18660119..18661129 1009..2019 100 <- Minus
2R 18661185..18661323 870..1008 100 <- Minus
2R 18661394..18661824 439..869 100 <- Minus
2R 18662310..18662747 1..438 100   Minus

LD37137.hyp Sequence

Translation from 954 to 2279

> LD37137.hyp
MSKIKKFFSRKKAEAAFKLNLTGSGMGTGHKLNSPKQETPSSSSRQKYEA
YVPPKRNEISNEARAAASAALARIDKKTSREFNTSLSAVKAQAKRELEAE
RRQREEAMGTPSTTSTSTSASGGDTRNLACEGVFFRCPLISEEILPKSVW
KVRIKEFLYQQLEADRGLTACLIIHNCNVKEKADECIATLIRYLENLIKN
PEEEKFCKIRMSNKIFSEKVRYVEGALDVLQAAGFNEVQIDGEPFLLWTK
EQTEKDLDLPTLVEALKSSEIIPLELDRNIKVLLPSQACRVALPDEFYRL
SPEEIKKEQQLRSEAIAQSQMLRTKAMREREEQRNLRMYRYALVRVKFPN
GLFIQGTFNVYEKISDVFEFVQSCLADESLDFSLVSNSDGKLGDEDLEKT
LYDCKLIPNTLLLFSANDTPAPLQTDINYLKEDLLMLVQAM*

LD37137.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Gint3-PE 441 CG5469-PE 1..441 1..441 2228 100 Plus
Gint3-PB 441 CG5469-PB 1..441 1..441 2228 100 Plus
Gint3-PD 441 CG5469-PD 1..441 1..441 2228 100 Plus

LD37137.pep Sequence

Translation from 954 to 2279

> LD37137.pep
MSKIKKFFSRKKAEAAFKLNLTGSGMGTGHKLNSPKQETPSSSSRQKYEA
YVPPKRNEISNEARAAASAALARIDKKTSREFNTSLSAVKAQAKRELEAE
RRQREEAMGTPSTTSTSTSASGGDTRNLACEGVFFRCPLISEEILPKSVW
KVRIKEFLYQQLEADRGLTACLIIHNCNVKEKADECIATLIRYLENLIKN
PEEEKFCKIRMSNKIFSEKVRYVEGALDVLQAAGFNEVQIDGEPFLLWTK
EQTEKDLDLPTLVEALKSSEIIPLELDRNIKVLLPSQACRVALPDEFYRL
SPEEIKKEQQLRSEAIAQSQMLRTKAMREREEQRNLRMYRYALVRVKFPN
GLFIQGTFNVYEKISDVFEFVQSCLADESLDFSLVSNSDGKLGDEDLEKT
LYDCKLIPNTLLLFSANDTPAPLQTDINYLKEDLLMLVQAM*

LD37137.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12799-PA 441 GF12799-PA 1..441 1..441 1860 79.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20958-PA 442 GG20958-PA 1..442 1..441 2067 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21854-PA 549 GH21854-PA 106..549 1..441 1672 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
Gint3-PE 441 CG5469-PE 1..441 1..441 2228 100 Plus
Gint3-PB 441 CG5469-PB 1..441 1..441 2228 100 Plus
Gint3-PD 441 CG5469-PD 1..441 1..441 2228 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20356-PA 441 GI20356-PA 1..441 1..441 1612 72.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11324-PA 447 GL11324-PA 16..447 15..441 1749 78.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18903-PA 543 GA18903-PA 112..543 15..441 1761 78.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19889-PA 441 GM19889-PA 1..441 1..441 2262 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25372-PA 441 GD25372-PA 1..441 1..441 2274 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22082-PA 443 GJ22082-PA 1..443 1..441 1735 74.5 Plus
Dvir\GJ16361-PA 398 GJ16361-PA 1..388 1..432 955 46.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15789-PA 442 GK15789-PA 1..442 1..441 1822 78.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13896-PA 443 GE13896-PA 1..443 1..441 2043 92.6 Plus