Clone LD37139 Report

Search the DGRC for LD37139

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:371
Well:39
Vector:pOT2
Associated Gene/TranscriptNoa36-RA
Protein status:LD37139.pep: gold
Preliminary Size:1219
Sequenced Size:1143

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10009 2001-01-01 Release 2 assignment
CG10009 2002-06-12 Blastp of sequenced clone
CG10009 2003-01-01 Sim4 clustering to Release 3
Noa36 2008-04-29 Release 5.5 accounting
Noa36 2008-08-15 Release 5.9 accounting
Noa36 2008-12-18 5.12 accounting

Clone Sequence Records

LD37139.complete Sequence

1143 bp (1143 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122179

> LD37139.complete
CCACACTGCCGCACACGTAAGGAAATAAGTTTTCTAATTCCTTGATTTCA
AAAATGCCGAAAAAGAAGACTGGGCAGCGTAAGAAGGCCGAGAAGCAGAA
GCTTCGCCTCAAGGAGATCCGCAGCAGAGAGGTGCCTCTTGCGGATTTGC
CCTGCAATGCACCAATGGAGTGCGACAAGTGCGAGAAGAAGCAGAAGTCG
AGAGCCTTCTGCTATTTCTGCCAGAGCATTCAGAGATTACCCATTTGCGC
CCAGTGCGGGAAAATCAAGTGCATGCTAAAGACCGGCGACTGCGTGGTCA
AACATCCGGGCGTCTACACCACGGGCCTCGGAATGGTGGGCGCCATCTGC
GACTTCTGCGAGGCTTGGGTTTGCCACGGACGCAAGTGTCTCCAAAACCA
CGCCTGCACGTGTCCGCTGCAGAATGCGACCTGCCTGGAGTGCGAACGCG
GTGTCTGGGAGCACGGTGGGCGCATCTTCAAGTGCTCCTTCTGCAACGGA
TTCCTGTGCGAGGACGATCAGTTCGAGCACCAGGCCAGCTGTCAGGTGCT
GGAGTCGGAGAACTACAAGTGTCAATCGTGCAACAAGCTGGGTCAATACT
CCTGCCTGCGCTGCAAGACCTGTTACTGCGAGGATCACGTGCGTCGCAAG
GGCTTCAAGTACGACAAGAACAAGCCAATTCCATGCCCCAAGTGCAACTA
CGATACCTCGGTGACCAAGGACCTCAGCATGTCCACGCGGTCGCACAAAT
TCGGGCGACAGCAACAAGGAGGCAACAGCGACGACGAGGAGGGATACGGT
GGATACTATGGAGCCGGTGGCAGTGGCTATTATGGTGGCGCCGCCAGTGG
GGGCTACTCCTACGGGGGTGATGACGATGAAGATGAGTCCGATGGAGACT
ACGATGATGAAAGCGATGAAGACGATGATGATGATGAGGAAGAGGACGAG
ACCACAGAAAGTGAACCGGAGAAGGAAACCGACAAAAAGGCCACCAAATA
AGGCTGAATTGTTTATATACTCGTAAATGGCCTTTTGTTAGTCCCTCTAA
GTGTGCGAATGAATTCTCGGCTGTGCAGTCGTTTCTCTCGATGTAATAGG
GAAATAAATTCTTTGTCAAATTGTAAAAAAAAAAAAAAAAAAA

LD37139.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Noa36-RA 1250 Noa36-RA 102..1226 1..1125 5625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24421122..24421703 1124..543 2895 99.8 Minus
chr3R 27901430 chr3R 24421790..24422337 548..1 2680 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28598058..28598640 1125..543 2915 100 Minus
3R 32079331 3R 28598727..28599274 548..1 2740 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28338889..28339471 1125..543 2915 100 Minus
3R 31820162 3R 28339558..28340105 548..1 2740 100 Minus
Blast to na_te.dros performed 2019-03-16 19:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 2482..2561 709..790 116 63.4 Plus

LD37139.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:58:46 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24421122..24421296 950..1124 100 == Minus
chr3R 24421380..24421700 546..866 99 <- Minus
chr3R 24421793..24422337 1..545 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:30 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 1..948 54..1001 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:22:30 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 1..948 54..1001 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:34 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 1..948 54..1001 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:17 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 1..948 54..1001 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:48:11 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 1..948 54..1001 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:49:14 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 6..1129 1..1124 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:22:30 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 6..1129 1..1124 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:34 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 15..1138 1..1124 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:17 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 6..1129 1..1124 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:11 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
Noa36-RA 15..1138 1..1124 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:46 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28598059..28598637 546..1124 100 <- Minus
3R 28598730..28599274 1..545 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:46 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28598059..28598637 546..1124 100 <- Minus
3R 28598730..28599274 1..545 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:58:46 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28598059..28598637 546..1124 100 <- Minus
3R 28598730..28599274 1..545 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:34 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24423781..24424359 546..1124 100 <- Minus
arm_3R 24424452..24424996 1..545 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:46:03 Download gff for LD37139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28338890..28339468 546..1124 100 <- Minus
3R 28339561..28340105 1..545 100   Minus

LD37139.pep Sequence

Translation from 53 to 1000

> LD37139.pep
MPKKKTGQRKKAEKQKLRLKEIRSREVPLADLPCNAPMECDKCEKKQKSR
AFCYFCQSIQRLPICAQCGKIKCMLKTGDCVVKHPGVYTTGLGMVGAICD
FCEAWVCHGRKCLQNHACTCPLQNATCLECERGVWEHGGRIFKCSFCNGF
LCEDDQFEHQASCQVLESENYKCQSCNKLGQYSCLRCKTCYCEDHVRRKG
FKYDKNKPIPCPKCNYDTSVTKDLSMSTRSHKFGRQQQGGNSDDEEGYGG
YYGAGGSGYYGGAASGGYSYGGDDDEDESDGDYDDESDEDDDDDEEEDET
TESEPEKETDKKATK*

LD37139.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16436-PA 316 GF16436-PA 1..246 1..246 1276 96.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12064-PA 317 GG12064-PA 1..317 1..315 1622 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16244-PA 315 GH16244-PA 1..247 1..246 1244 93.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Noa36-PA 315 CG10009-PA 1..315 1..315 1788 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22181-PA 306 GI22181-PA 1..247 1..246 1245 93.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23471-PA 312 GL23471-PA 1..241 1..241 1243 94.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10006-PA 312 GA10006-PA 1..241 1..241 1243 94.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16284-PA 315 GM16284-PA 1..315 1..315 1655 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18027-PA 315 GD18027-PA 1..315 1..315 1655 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24300-PA 307 GJ24300-PA 1..247 1..246 1242 93.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10996-PA 329 GK10996-PA 1..246 1..246 1259 93.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10506-PA 315 GE10506-PA 1..315 1..315 1639 98.7 Plus

LD37139.hyp Sequence

Translation from 53 to 1000

> LD37139.hyp
MPKKKTGQRKKAEKQKLRLKEIRSREVPLADLPCNAPMECDKCEKKQKSR
AFCYFCQSIQRLPICAQCGKIKCMLKTGDCVVKHPGVYTTGLGMVGAICD
FCEAWVCHGRKCLQNHACTCPLQNATCLECERGVWEHGGRIFKCSFCNGF
LCEDDQFEHQASCQVLESENYKCQSCNKLGQYSCLRCKTCYCEDHVRRKG
FKYDKNKPIPCPKCNYDTSVTKDLSMSTRSHKFGRQQQGGNSDDEEGYGG
YYGAGGSGYYGGAASGGYSYGGDDDEDESDGDYDDESDEDDDDDEEEDET
TESEPEKETDKKATK*

LD37139.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Noa36-PA 315 CG10009-PA 1..315 1..315 1788 100 Plus