Clone LD37170 Report

Search the DGRC for LD37170

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:371
Well:70
Vector:pOT2
Associated Gene/Transcriptpnut-RA
Protein status:LD37170.pep: gold
Preliminary Size:2569
Sequenced Size:2450

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8705 2001-01-01 Release 2 assignment
CG8705 2001-09-19 Blastp of sequenced clone
CG8705 2003-01-01 Sim4 clustering to Release 3
pnut 2008-04-29 Release 5.5 accounting
pnut 2008-08-15 Release 5.9 accounting
pnut 2008-12-18 5.12 accounting

Clone Sequence Records

LD37170.complete Sequence

2450 bp (2450 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058663

> LD37170.complete
AGAAAATGCAAGAAAAGTAAGAGCGTAAAAGAGCTGGCGTAGGCGTGACA
AAAGCGGTGAAAAAGCAACGGTTCTGTGCAAGCAAAGTGAATAAATACAG
TGAAGCCCACCTGCGAACGAATATCGAAGGCTCAAAGGCGAATTTGGCGC
TATTCCAATGAATAGTCCTCGCTCGAACGCGGTTAATGGCGGCAGCGGCG
GCGCCATCTCCGCTCTGCCCAGCACTCTGGCCCAACTGGCTCTGCGCGAC
AAGCAGCAGGCTGCGTCGGCATCGGCGTCCTCTGCCACGAACGGCAGCAG
CGGCAGCGAGTCCTTGGTGGGCGTCGGTGGACGACCGCCCAATCAGCCGC
CCAGTGTGCCAGTGGCCGCCAGTGGCAAGCTGGACACCAGCGGCGGAGGC
GCCTCCAACGGCGACTCGAACAAACTGACCCACGATCTGCAGGAGAAGGA
GCACCAGCAGGCGCAGAAGCCACAGAAGCCACCGCTCCCGGTGCGCCAGA
AGCCCATGGAGATCGCCGGCTATGTGGGCTTCGCCAACCTGCCCAATCAG
GTCTATCGCAAGGCCGTCAAGCGGGGATTCGAGTTCACTCTGATGGTGGT
GGGCGCCAGTGGGCTGGGCAAGTCGACGCTGATCAACTCCATGTTCCTGT
CGGACATCTACAACGCGGAACAGTATCCGGGCCCCTCGCTGCGCAAAAAG
AAGACCGTGGCCGTGGAGGCCACCAAAGTAATGCTCAAGGAGAACGGCGT
CAATCTGACACTCACGGTGGTGGACACACCCGGATTCGGTGATGCCGTTG
ACAACAGCAACTGCTGGGTGCCCATACTGGAGTACGTGGATAGCAAGTAC
GAGGAGTACCTGACAGCCGAGTCGCGGGTGTACCGAAAAACCATTTCGGA
CAGCCGGGTGCACTGCTGCCTCTACTTCATAGCGCCATCGGGACACGGAC
TCCTGCCGCTGGACATTGCCTGCATGCAGAGCCTGTCGGACAAGGTAAAT
CTGGTGCCGGTGATCGCCAAGGCGGACACCATGACGCCCGACGAGGTGCA
TCTATTTAAGAAGCAGATCCTTAACGAGATCGCCCAGCACAAGATCAAGA
TCTACGACTTCCCCGCCACGCTGGAGGATGCGGCCGAGGAGGCCAAAACC
ACGCAGAATTTGCGCAGCCGAGTGCCATTCGCGGTGGTGGGTGCCAACAC
CATCATCGAGCAGGACGGAAAGAAGGTCCGGGGTAGGCGTTATCCCTGGG
GCCTGGTGGAGGTGGAGAACCTGACGCATTGCGACTTTATAGCGCTGCGC
AACATGGTCATACGCACGCACCTTCAGGACCTCAAGGACGTGACGAACAA
CGTCCACTACGAGAACTACCGCTGCCGGAAGCTATCCGAGCTGGGATTGG
TGGACGGCAAGGCCAGGCTGTCCAACAAGAACCCACTCACCCAGATGGAG
GAGGAAAAGCGGGAGCACGAGCAGAAGATGAAGAAGATGGAGGCCGAGAT
GGAGCAGGTGTTTGACATGAAGGTCAAGGAGAAGATGCAGAAGCTCAGGG
ACTCGGAGCTGGAGCTGGCGCGGCGCCACGAGGAGCGCAAGAAGGCGCTG
GAGCTGCAGATCCGGGAGCTGGAGGAGAAGAGACGCGAGTTCGAGCGCGA
GAAGAAGGAGTGGGAGGATGTCAACCACGTGACGCTCGAGGAGCTCAAGC
GACGCAGCCTGGGGGCCAACAGCAGCACGGACAATGTGGATGGCAAGAAG
GAGAAGAAAAAGAAGGGTCTGTTCTAAGTCAACACGCTCAAAACCCCCAT
TCCCCAAACCCCCTTCCGCTCCTCGTATACTTAAGCGCTAATCTCGAGAA
CAAAGCAAATGAAAACCCTAGCGTATCCTACTCTTATTCCTACCACATAA
AGTAATTCGAAAAGTGCATAAATATATCTATTGTTGGGCCCAGCCGCCCC
ACAAGGCTTCTATTCGCACAGCAATCGTCCAGCGACGGCGTTGCATTTGT
TTTCTACATACTATACAAGTACATATAACACATAGCAGTTGCAGTATTTT
ACCAATATATATCCACGCATTACTTGACGAAACACATTTGCTAGCCTAAT
GAATTGAACACGCAAACGAATTAAATCGAGACAGTAACAAACGGTATTTG
CAAAATACTTAAGTATCTTAAAGCCTAATCATAATAAAAACTAAGCAGAA
TGTACGAGTGCGAGGCGAAATTGATCCTAAAATTAATTATAACGAATAAC
GAATCCATGTATAACGTATGCTATTGATATTGTAATTGTATTTTACCTAT
TATGCATAAAGTCATTGAACACCCGAACACACACCAGCAAGGCAAAAGCC
GCAAGCGCAGCAGAAAACATCAAGAAACAAAATATACTCTTGCATTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD37170.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
pnut-RB 3062 pnut-RB 632..3039 1..2408 12010 99.9 Plus
pnut-RA 2472 pnut-RA 42..2449 1..2408 12010 99.9 Plus
Sep1.a 2040 Sep1.a 142..262 516..636 320 84.2 Plus
Sep1.a 2040 Sep1.a 364..461 738..835 205 80.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4125393..4127790 1..2398 11870 99.7 Plus
chrX 22417052 chrX 21224689..21224809 516..636 320 84.3 Plus
chrX 22417052 chrX 21224977..21225074 738..835 205 80.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8237900..8240307 1..2408 12010 99.9 Plus
X 23542271 X 21359531..21359651 516..636 320 84.3 Plus
X 23542271 X 21359819..21359916 738..835 205 80.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8239099..8241506 1..2408 12010 99.9 Plus
X 23527363 X 21344623..21344743 516..636 320 84.2 Plus
X 23527363 X 21344911..21345008 738..835 205 80.6 Plus
X 23527363 X 16694719..16694787 637..569 180 84 Minus
X 23527363 X 16693615..16693759 1339..1195 155 73.7 Minus
X 23527363 X 16694410..16694458 946..898 140 85.7 Minus
Blast to na_te.dros performed on 2019-03-16 20:38:10 has no hits.

LD37170.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:38:52 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4125393..4126834 1..1442 99 == Plus
chr2R 4126936..4127790 1544..2398 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:33 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RA 1..1620 158..1777 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:16 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RA 1..1620 158..1777 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:25:20 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RB 1..1620 158..1777 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:40 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RA 1..1620 158..1777 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:47 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RB 1..1620 158..1777 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:39 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RA 42..2439 1..2398 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:16 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RA 42..2439 1..2398 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:20 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RB 630..3027 1..2398 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:41 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RA 42..2439 1..2398 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:47 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
pnut-RB 630..3027 1..2398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:52 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8237900..8240297 1..2398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:52 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8237900..8240297 1..2398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:52 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8237900..8240297 1..2398 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:20 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4125405..4127802 1..2398 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:07 Download gff for LD37170.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8239099..8241496 1..2398 100   Plus

LD37170.hyp Sequence

Translation from 157 to 1776

> LD37170.hyp
MNSPRSNAVNGGSGGAISALPSTLAQLALRDKQQAASASASSATNGSSGS
ESLVGVGGRPPNQPPSVPVAASGKLDTSGGGASNGDSNKLTHDLQEKEHQ
QAQKPQKPPLPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVVGA
SGLGKSTLINSMFLSDIYNAEQYPGPSLRKKKTVAVEATKVMLKENGVNL
TLTVVDTPGFGDAVDNSNCWVPILEYVDSKYEEYLTAESRVYRKTISDSR
VHCCLYFIAPSGHGLLPLDIACMQSLSDKVNLVPVIAKADTMTPDEVHLF
KKQILNEIAQHKIKIYDFPATLEDAAEEAKTTQNLRSRVPFAVVGANTII
EQDGKKVRGRRYPWGLVEVENLTHCDFIALRNMVIRTHLQDLKDVTNNVH
YENYRCRKLSELGLVDGKARLSNKNPLTQMEEEKREHEQKMKKMEAEMEQ
VFDMKVKEKMQKLRDSELELARRHEERKKALELQIRELEEKRREFEREKK
EWEDVNHVTLEELKRRSLGANSSTDNVDGKKEKKKKGLF*

LD37170.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
pnut-PA 539 CG8705-PA 1..539 1..539 2765 100 Plus
pnut-PB 539 CG8705-PB 1..539 1..539 2765 100 Plus
Sep1-PA 361 CG1403-PA 10..353 117..451 906 53 Plus
Sep4-PC 427 CG9699-PC 11..420 60..458 826 42.2 Plus
Sep4-PE 427 CG9699-PE 11..420 60..458 826 42.2 Plus

LD37170.pep Sequence

Translation from 157 to 1776

> LD37170.pep
MNSPRSNAVNGGSGGAISALPSTLAQLALRDKQQAASASASSATNGSSGS
ESLVGVGGRPPNQPPSVPVAASGKLDTSGGGASNGDSNKLTHDLQEKEHQ
QAQKPQKPPLPVRQKPMEIAGYVGFANLPNQVYRKAVKRGFEFTLMVVGA
SGLGKSTLINSMFLSDIYNAEQYPGPSLRKKKTVAVEATKVMLKENGVNL
TLTVVDTPGFGDAVDNSNCWVPILEYVDSKYEEYLTAESRVYRKTISDSR
VHCCLYFIAPSGHGLLPLDIACMQSLSDKVNLVPVIAKADTMTPDEVHLF
KKQILNEIAQHKIKIYDFPATLEDAAEEAKTTQNLRSRVPFAVVGANTII
EQDGKKVRGRRYPWGLVEVENLTHCDFIALRNMVIRTHLQDLKDVTNNVH
YENYRCRKLSELGLVDGKARLSNKNPLTQMEEEKREHEQKMKKMEAEMEQ
VFDMKVKEKMQKLRDSELELARRHEERKKALELQIRELEEKRREFEREKK
EWEDVNHVTLEELKRRSLGANSSTDNVDGKKEKKKKGLF*

LD37170.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12347-PA 545 GF12347-PA 1..545 1..539 2510 92.3 Plus
Dana\GF20920-PA 364 GF20920-PA 10..311 117..419 941 58.6 Plus
Dana\GF22296-PA 375 GF22296-PA 13..367 122..457 848 46.8 Plus
Dana\GF11226-PA 419 GF11226-PA 7..377 101..479 807 40.9 Plus
Dana\GF18330-PA 419 GF18330-PA 13..409 112..507 793 39.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23345-PA 541 GG23345-PA 1..541 1..539 2867 99.1 Plus
Dere\GG19725-PA 361 GG19725-PA 10..303 117..410 938 59.3 Plus
Dere\GG18234-PA 430 GG18234-PA 56..423 107..458 840 45.3 Plus
Dere\GG10692-PA 422 GG10692-PA 1..412 90..507 810 39.1 Plus
Dere\GG15324-PA 419 GG15324-PA 13..409 112..507 795 39.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21082-PA 541 GH21082-PA 1..541 1..539 2402 88 Plus
Dgri\GH24812-PA 362 GH24812-PA 10..303 117..410 943 59.3 Plus
Dgri\GH24231-PA 440 GH24231-PA 66..433 107..458 848 45.6 Plus
Dgri\GH16156-PA 419 GH16156-PA 13..409 112..507 796 40 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
pnut-PA 539 CG8705-PA 1..539 1..539 2765 100 Plus
pnut-PB 539 CG8705-PB 1..539 1..539 2765 100 Plus
Sep1-PA 361 CG1403-PA 10..353 117..451 906 53 Plus
Sep4-PC 427 CG9699-PC 11..420 60..458 826 42.2 Plus
Sep4-PE 427 CG9699-PE 11..420 60..458 826 42.2 Plus
Sep4-PD 427 CG9699-PD 11..420 60..458 826 42.2 Plus
Sep4-PB 427 CG9699-PB 11..420 60..458 826 42.2 Plus
Sep4-PF 427 CG9699-PF 11..420 60..458 826 42.2 Plus
Sep4-PA 427 CG9699-PA 11..420 60..458 826 42.2 Plus
Sep4-PG 375 CG9699-PG 13..368 122..458 811 46.1 Plus
Sep2-PA 419 CG4173-PA 13..419 112..516 782 38.5 Plus
Sep5-PB 422 CG2916-PB 21..422 117..516 776 39.2 Plus
Sep5-PA 422 CG2916-PA 21..422 117..516 776 39.2 Plus
Sep2-PB 360 CG4173-PB 1..360 164..516 674 37.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18682-PA 541 GI18682-PA 1..541 1..539 2355 86.9 Plus
Dmoj\GI21539-PA 364 GI21539-PA 10..356 117..451 940 52.3 Plus
Dmoj\GI22174-PA 419 GI22174-PA 13..409 112..507 793 40 Plus
Dmoj\GI10938-PA 294 GI10938-PA 3..286 193..457 605 41.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11211-PA 534 GL11211-PA 1..534 1..539 2544 90.3 Plus
Dper\GL16012-PA 363 GL16012-PA 10..360 117..461 949 53.4 Plus
Dper\GL13925-PA 419 GL13925-PA 16..409 115..507 792 39.8 Plus
Dper\GL10608-PA 421 GL10608-PA 15..373 115..479 782 41.6 Plus
Dper\GL19764-PA 369 GL19764-PA 39..362 138..458 725 45.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21269-PA 534 GA21269-PA 1..534 1..539 2544 90.3 Plus
Dpse\GA12712-PA 363 GA12712-PA 10..360 117..461 949 53.4 Plus
Dpse\GA21972-PA 432 GA21972-PA 58..425 107..458 839 45.3 Plus
Dpse\GA18006-PA 419 GA18006-PA 16..409 115..507 792 39.8 Plus
Dpse\GA15516-PA 421 GA15516-PA 15..373 115..479 780 41.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21017-PA 539 GM21017-PA 1..539 1..539 2890 99.8 Plus
Dsec\GM23080-PA 361 GM23080-PA 10..303 117..410 939 59.3 Plus
Dsec\GM20740-PA 422 GM20740-PA 1..413 90..508 806 38.7 Plus
Dsec\GM23178-PA 419 GM23178-PA 13..409 112..507 794 39.7 Plus
Dsec\GM13376-PA 217 GM13376-PA 1..147 268..413 370 46.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10550-PA 528 GD10550-PA 4..528 14..539 2729 97.3 Plus
Dsim\GD15733-PA 375 GD15733-PA 13..368 122..458 843 46.1 Plus
Dsim\GD10205-PA 422 GD10205-PA 1..422 90..534 802 39.2 Plus
Dsim\GD20051-PA 419 GD20051-PA 13..409 112..507 797 39.7 Plus
Dsim\GD17531-PA 164 GD17531-PA 1..106 305..410 321 57.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21698-PA 538 GJ21698-PA 1..538 1..539 2498 90.3 Plus
Dvir\GJ16012-PA 364 GJ16012-PA 10..356 117..451 953 53.2 Plus
Dvir\GJ24294-PA 419 GJ24294-PA 13..409 112..507 796 40 Plus
Dvir\GJ15264-PA 440 GJ15264-PA 73..433 107..458 794 44.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15820-PA 546 GK15820-PA 1..546 1..539 2508 88.6 Plus
Dwil\GK25618-PA 364 GK25618-PA 10..356 117..451 935 52.4 Plus
Dwil\GK10092-PA 431 GK10092-PA 57..424 107..458 848 45.6 Plus
Dwil\GK15728-PA 422 GK15728-PA 16..408 115..506 810 40.3 Plus
Dwil\GK22714-PA 419 GK22714-PA 13..410 112..508 795 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19185-PA 541 GE19185-PA 1..541 1..539 2867 99.1 Plus
Dyak\GE17923-PA 361 GE17923-PA 10..303 117..410 938 59.3 Plus
Dyak\GE15652-PA 430 GE15652-PA 56..423 107..458 840 45.3 Plus
Dyak\GE23454-PA 422 GE23454-PA 1..412 90..507 802 38.8 Plus
Dyak\Sep2-PA 419 GE25056-PA 13..409 112..507 794 39.5 Plus