Clone LD37196 Report

Search the DGRC for LD37196

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:371
Well:96
Vector:pOT2
Associated Gene/TranscriptSpc25-RA
Protein status:LD37196.pep: gold
Preliminary Size:1075
Sequenced Size:966

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7242 2001-01-01 Release 2 assignment
CG7242 2003-01-01 Sim4 clustering to Release 3
CG7242 2003-01-15 Blastp of sequenced clone
Spc25 2008-04-29 Release 5.5 accounting
Spc25 2008-08-15 Release 5.9 accounting
Spc25 2008-12-18 5.12 accounting

Clone Sequence Records

LD37196.complete Sequence

966 bp (966 high quality bases) assembled on 2003-01-15

GenBank Submission: AY051881

> LD37196.complete
CAAAACAAGCGTCTGGAAAACGGCGCTTAGTTTTTAAAGATTTTAATTGA
TTGCAGTAAATTGAGTTTAAAATGGCAATTATTATGACTGAATCGAGTTA
CGAAAGGCGCGTAAAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCC
TCGAGGCGAAATTCATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTG
GATGTCAAGGAAGCAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCA
AAAAGTGCTCATGGAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCA
TAGAGGAACTTGATCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCC
ATGAAAGATTGGTTTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAA
CGAAATCATGGAAAGCATTCACACGCTGTCGAAGACAACAAGAACCTATA
TAAATCAAGAAGCGCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGT
GGCGATAAACGCGACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGT
GGAAGGACTGGACTCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACG
TGGCGCAGTGGCAGCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAG
TCACGTGCTCCCACTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTAT
AATCGAGATTGATCTCACATCGCCGATGAGCCACACCTGACTTCCGATTA
ACTGATTTACTTGGATTAGGGGGAAGACCCTTTTCCAATGGAGCACTTTA
TTTTAGCATTATAAATAGTTGGCTTCCAATAAAAGCTCAATTGGGAATTC
ATCTTAACGAATTAAGCATCTTATTATAGCAGTTTTTTAGCCATTTAAGT
ACTGCTTGTAATTGTTTAAGTGCAGTGTAAATTATACATATATCTCCCAA
AAAAAAAAAAAAAAAA

LD37196.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-RA 1185 Spc25-RA 48..999 1..952 4760 100 Plus
Spc25.b 1195 Spc25.b 48..999 1..952 4760 100 Plus
Spc25.a 977 Spc25.a 439..977 414..952 2695 100 Plus
Spc25.a 977 Spc25.a 14..428 1..415 2075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8787953..8788487 414..948 2630 99.4 Plus
chr3R 27901430 chr3R 8787248..8787464 199..415 1070 99.5 Plus
chr3R 27901430 chr3R 8786987..8787184 1..198 945 98.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12962715..12963253 414..952 2695 100 Plus
3R 32079331 3R 12962026..12962242 199..415 1085 100 Plus
3R 32079331 3R 12961765..12961962 1..198 990 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12703546..12704084 414..952 2695 100 Plus
3R 31820162 3R 12702857..12703073 199..415 1085 100 Plus
3R 31820162 3R 12702596..12702793 1..198 990 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:31:41 has no hits.

LD37196.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:32:54 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8787248..8787464 199..415 99 -> Plus
chr3R 8786987..8787184 1..198 98 -> Plus
chr3R 8787955..8788487 416..948 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:35 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 1..669 72..740 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:18 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 1..669 72..740 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:06:45 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 1..669 72..740 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:14 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 1..669 72..740 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:38 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 1..669 72..740 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:59 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 14..961 1..948 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:18 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 14..961 1..948 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:06:45 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 21..968 1..948 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:15 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 14..961 1..948 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:38 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
Spc25-RA 21..968 1..948 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:54 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12961765..12961962 1..198 100 -> Plus
3R 12962026..12962242 199..415 100 -> Plus
3R 12962717..12963249 416..948 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:54 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12961765..12961962 1..198 100 -> Plus
3R 12962026..12962242 199..415 100 -> Plus
3R 12962717..12963249 416..948 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:54 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12961765..12961962 1..198 100 -> Plus
3R 12962026..12962242 199..415 100 -> Plus
3R 12962717..12963249 416..948 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:06:45 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8787748..8787964 199..415 100 -> Plus
arm_3R 8787487..8787684 1..198 100 -> Plus
arm_3R 8788439..8788971 416..948 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:27 Download gff for LD37196.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12702857..12703073 199..415 100 -> Plus
3R 12703548..12704080 416..948 100   Plus
3R 12702596..12702793 1..198 100 -> Plus

LD37196.pep Sequence

Translation from 71 to 739

> LD37196.pep
MAIIMTESSYERRVKALYEKQIHMEALEAKFIKKVFKFNSNLLDVKEAAS
RHQRKVGKLQKVLMERREELDKRVSFIEELDRELEATKLHNLAMKDWFKQ
QKMLAKQRKNEIMESIHTLSKTTRTYINQEALPARVKGVTVLRGDKRDQL
IPFDLKATDVEGLDSLCQHLESLNVDVAQWQQLISLAMDMAMESRAPTTP
PKEADNCKSIIEIDLTSPMSHT*

LD37196.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16921-PA 215 GF16921-PA 11..212 8..221 460 47 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\mitch-PA 220 GG19269-PA 1..220 1..220 977 83.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18360-PA 209 GH18360-PA 9..208 12..221 250 34.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-PA 222 CG7242-PA 1..222 1..222 1116 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23349-PA 208 GI23349-PA 3..199 12..221 276 36.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24369-PA 236 GL24369-PA 12..231 8..218 381 38.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20206-PB 235 GA20206-PB 12..230 8..218 384 38.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\mitch-PA 222 GM24067-PA 1..221 1..221 1062 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\mitch-PA 222 GD18864-PA 1..221 1..221 1068 91.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10343-PA 210 GJ10343-PA 9..209 12..221 249 32.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\mitch-PA 223 GE26225-PA 1..221 1..221 1023 86.9 Plus

LD37196.hyp Sequence

Translation from 71 to 739

> LD37196.hyp
MAIIMTESSYERRVKALYEKQIHMEALEAKFIKKVFKFNSNLLDVKEAAS
RHQRKVGKLQKVLMERREELDKRVSFIEELDRELEATKLHNLAMKDWFKQ
QKMLAKQRKNEIMESIHTLSKTTRTYINQEALPARVKGVTVLRGDKRDQL
IPFDLKATDVEGLDSLCQHLESLNVDVAQWQQLISLAMDMAMESRAPTTP
PKEADNCKSIIEIDLTSPMSHT*

LD37196.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Spc25-PA 222 CG7242-PA 1..222 1..222 1116 100 Plus