Clone LD37206 Report

Search the DGRC for LD37206

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:372
Well:6
Vector:pOT2
Associated Gene/TranscriptCG6144-RB
Protein status:LD37206.pep: gold
Preliminary Size:1583
Sequenced Size:1509

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6144 2001-01-01 Release 2 assignment
CG6144 2001-07-04 Blastp of sequenced clone
CG6144 2003-01-01 Sim4 clustering to Release 3
CG6144 2008-04-29 Release 5.5 accounting
CG6144 2008-08-15 Release 5.9 accounting
CG6144 2008-12-18 5.12 accounting

Clone Sequence Records

LD37206.complete Sequence

1509 bp (1509 high quality bases) assembled on 2001-07-04

GenBank Submission: AY059456

> LD37206.complete
TAGAATTAGCATTAGCGTAGCATTCCGATAGATAAGTGTAGGCCTAGTCA
TGGATTTCACGGGCTTTGAAGTGCGAAAGTGCCCACCGACTGTCATGTAC
ATTCCGAACTTCATCACTTCCGAGGAGGAGCAGCGCATCCTGAGCCACAT
CGAGCGCACTCCGAAGCCTCGATGGACGCAGCTGCTGAACCGCCGGCTGG
TCAACTACGGCGGTGTGCCGCATCCCAACGGAATGATTGCCGAGGAGATT
CCGGAGTGGCTGCAGACCTATGTGGACAAGGTCAACAATCTGGGGGTGTT
CGAGTCGCAGAACGCTAACCATGTTTTGGTCAACGAGTATCTGCCGGGTC
AGGGAATTCTGCCGCACACAGATGGACCACTGTTCCATCCCATCATCTCC
ACCATTTCCACGGGTGCTCATACCGTGCTGGAGTTTGTCAAGCGTGAGGA
CACCACAACTGAAACAGAAGCTGGAGATCAGACGACCCGTGAAGTGCTCT
TCAAGCTGCTGCTGGAACCGCGCAGCCTGCTCATCCTCAAGGACACGCTG
TACACCGACTATCTGCACGCCATCTCCGAGACTAGCGAGGATGTGCTCTG
CGATCGCATCTCCAACTACGATCTGTGCGAGAATACCTACAAGATCGGGG
ATCACTTAGTACGCCGATCGCCGCGCATCTCCCTCACCATCCGTAATGTG
CCCAAGACCAGCAAGATGAAGCTCAAGTTCTGCTAGGTTCATTCCGCCAT
TCGATGTTCTTTGGCATTAAAGATTACAGATTACACAGATGTTGACTAGC
TGCACGTTAAACGAACCCACTGAAGAGATCCCTGGGATCCAAAAAGAACT
ATGATAATCTGCAACCTGAATCTTCCGCTAGATGTTAAAGCACTCCGCAC
TAGCAGCACACTTGTTCGCAAGCAAATCCATGTTGGCCCACACAAAAGTG
CTTTATTTATACCGCTAGCATTGTGTACATATATATAAATGTTTGTATTA
CGTATTACGGAGCAATAAGTTGTCCTGATCGGCGGACAGGCTCGAGCTGT
ATCCTCAGATTCCACCTGACCGCCGGCGGCCTTTAGATTTAGTTGTGCGA
GCAGTTGTTGCAGGAATCCATGGCCTAGATTTGTGAAATATGTGGTTAAC
TTTGTATATGGGCATGTGCGACAACTGATTTTGATTATGATTGTCCTAAT
GCTTTGTACAATAGAATCTACACAGAATTTATGTAAAATCTTTCTGATTG
AAAATGTTCCTTACGTTAACTACTAAGCAAATCAATTGCAGCCAAAGAAA
TCATAATGATGATCAGTTGACGAGATACCCCTTATATGTATGTTGAATGG
AGCAGCCAGCACACTGGTTACCATAGTCGTGTGCTCCATGCTCCGGCCTC
CTGTGTCCAAGTGTATTTTTGTAACCGTTTTTTCCACCGCGCACCGCAAA
AAAGAGCGAAGAATTGCCAATAAACGTTATTGTCCACCTAAAAAAAAAAA
AAAAAAAAA

LD37206.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-RB 1722 CG6144-RB 232..1722 1..1491 7455 100 Plus
CG6144-RA 1722 CG6144-RA 232..1722 1..1491 7455 100 Plus
CG13144-RA 1530 CG13144-RA 967..1530 1491..928 2820 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10487877..10489291 78..1489 6810 99.1 Plus
chr2L 23010047 chr2L 10487737..10487815 1..79 395 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:31:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10489050..10490463 78..1491 7070 100 Plus
2L 23513712 2L 10488910..10488988 1..79 395 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10489050..10490463 78..1491 7070 100 Plus
2L 23513712 2L 10488910..10488988 1..79 395 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:29:04 has no hits.

LD37206.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:05 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10487737..10487815 1..79 100 -> Plus
chr2L 10487879..10489291 80..1489 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:36 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 1..687 50..736 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:48 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RC 1..687 50..736 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:41 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 1..687 50..736 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:18 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 1..687 50..736 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:31 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 1..687 50..736 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:45 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 166..1654 1..1489 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:48 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RC 19..1507 1..1489 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:41 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 217..1705 1..1489 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:18 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 166..1654 1..1489 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:31 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
CG6144-RB 217..1705 1..1489 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:05 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10488910..10488988 1..79 100 -> Plus
2L 10489052..10490461 80..1489 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:05 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10488910..10488988 1..79 100 -> Plus
2L 10489052..10490461 80..1489 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:05 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10488910..10488988 1..79 100 -> Plus
2L 10489052..10490461 80..1489 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:41 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10488910..10488988 1..79 100 -> Plus
arm_2L 10489052..10490461 80..1489 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:31 Download gff for LD37206.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10488910..10488988 1..79 100 -> Plus
2L 10489052..10490461 80..1489 100   Plus

LD37206.hyp Sequence

Translation from 49 to 735

> LD37206.hyp
MDFTGFEVRKCPPTVMYIPNFITSEEEQRILSHIERTPKPRWTQLLNRRL
VNYGGVPHPNGMIAEEIPEWLQTYVDKVNNLGVFESQNANHVLVNEYLPG
QGILPHTDGPLFHPIISTISTGAHTVLEFVKREDTTTETEAGDQTTREVL
FKLLLEPRSLLILKDTLYTDYLHAISETSEDVLCDRISNYDLCENTYKIG
DHLVRRSPRISLTIRNVPKTSKMKLKFC*

LD37206.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-PC 228 CG6144-PC 1..228 1..228 1207 100 Plus
CG6144-PB 228 CG6144-PB 1..228 1..228 1207 100 Plus

LD37206.pep Sequence

Translation from 49 to 735

> LD37206.pep
MDFTGFEVRKCPPTVMYIPNFITSEEEQRILSHIERTPKPRWTQLLNRRL
VNYGGVPHPNGMIAEEIPEWLQTYVDKVNNLGVFESQNANHVLVNEYLPG
QGILPHTDGPLFHPIISTISTGAHTVLEFVKREDTTTETEAGDQTTREVL
FKLLLEPRSLLILKDTLYTDYLHAISETSEDVLCDRISNYDLCENTYKIG
DHLVRRSPRISLTIRNVPKTSKMKLKFC*

LD37206.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15798-PA 231 GF15798-PA 1..231 1..228 1079 87 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23646-PA 232 GG23646-PA 1..232 1..228 1147 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11262-PA 221 GH11262-PA 1..221 1..228 1037 86 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6144-PC 228 CG6144-PC 1..228 1..228 1207 100 Plus
CG6144-PB 228 CG6144-PB 1..228 1..228 1207 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16672-PA 222 GI16672-PA 1..222 1..228 1043 86 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18598-PA 237 GL18598-PA 1..237 1..228 1095 86.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19388-PA 237 GA19388-PA 1..237 1..228 1095 87.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18491-PA 228 GM18491-PA 1..228 1..228 1193 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23711-PA 228 GD23711-PA 1..228 1..228 1200 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17179-PA 221 GJ17179-PA 1..221 1..228 1055 87.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21248-PA 228 GK21248-PA 1..228 1..228 1080 88.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18466-PA 234 GE18466-PA 1..234 1..228 1140 93.2 Plus