Clone LD37276 Report

Search the DGRC for LD37276

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:372
Well:76
Vector:pOT2
Associated Gene/TranscriptCG18766-RA
Protein status:LD37276.pep: gold
Preliminary Size:1791
Sequenced Size:1656

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18766 2001-01-01 Release 2 assignment
CG5995 2001-01-01 Release 2 assignment
CG18766 2001-07-04 Blastp of sequenced clone
CG18766 2003-01-01 Sim4 clustering to Release 3
CG18766 2008-04-29 Release 5.5 accounting
CG18766 2008-08-15 Release 5.9 accounting
CG18766 2008-12-18 5.12 accounting

Clone Sequence Records

LD37276.complete Sequence

1656 bp (1656 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051883

> LD37276.complete
CGAGAGCTGCGCAGCGTAGGAGCTACAAACTACGTTTTTCGTGTGTTTCC
CTCTTGAAGATAATTAAAATTTAATTATTTGACTTATTATTAAGTTTTGT
GCCCACGCTGTTGGCGTCGTAGTGTTGTTGTTTCGCCCGTTGTTGCATGG
AGCAAAGCGAAAAACGTAACAATAGAACGCAATCAACGCAAGAAAATCGG
ATGTGGATGCGATGTGAGTGAGCGAATCCGTGTACAGTATGCCAGCCCAC
TAGATAAACCGCTTCATGTCCTCCATCAGCTGGCAGACGAAGATTGTCGG
GCAATCCCATTTGTCGGCAGTAAGACCCATGTGAAATGCCTTATGAAAAA
TTCAACAAAAAGCGCCGACAATGGGAGGATAGTGGTGTTCTAGAGCTGAT
CAAACTATGGAAAGTCTGCGCCTATGAGCTGCGCACCATTAAACGCAATG
GCCATCTGTATGTGGCAATGGCCAAGCAGCTAACCTCGCTGGGCGTCCCT
GTTACCGCACTCGAGGTTCACTTTAAAGTCAACAATCTAACGCAGCGCTA
CCGGCAGGAGCAGAAGACCTTTGAGACCACAGGCATCATCAGCACCTGGA
AGTTCTACAGTCAAGTGGATGATGTGTTTAAGAGTCTGGCCGCACACACC
GGTTACAAAGACAAACGCATGACAAGTGCGTCCAATACGAGCAGCTTACC
ATCCACATCCGAGTCACCAGTTTGGAAGAATCCAATGTCTCAGCAAGAGT
TTAATAGTAACAACACGGAGGGGTTCTATAAGACCGAGTACGGGATGCAT
CGGCACTTTATGGACCACTCCCAGCCACCACCCAATGCCGGCAGCGTGGA
CAACTTCATGGCCTCATCGGCGGCCGTGGCGGCGGTGGCTGCCGCTGCCT
CAGCCCGCCTGGCGGATAACAACATGGATCAGCAAATGAACACGGCTGCC
GGTGGAAGCGGTGGCAGTGGTGGTGGTGGGGGCAACACCAATGGAGGCGT
GGCCAACTACCAGAAGATCAAGAAGTCGCACGAGGACTACGACAAGTTCG
TGGACATTGTGAAGAACATCGTGGACACGCACAAGAGCACTCCCGATAAG
GTGGACACGTTCGGCGACTTCATCAAATCGTACATGAAGCGCTGGCCGGA
GCGGCTGCAGGACGAGGCCATCAACCACATCACCAACTATGTGATCGTGA
AGAACATGGAGCACAGCATGGTCAGCAGCCACAATCCCGAGGGGGTGAAC
AACCGACAATAACAATACAAGCAGGAGCCCAACAACTGAACGAGTTGTTG
GACGACGCAGCTCCAGGAACCAGGCACAGAAGCCGAACGAAGTGAGACGT
TAGGCGAGGATTACTTAAGGTGGCGCGCAGTTACTTAACCGCATCTGAGT
TGCGGCCAAGTTCATTGGACACACACACGGCATACAGTATTTTTTGTATA
GTTAAAATATACATTGGAGTTTTAGTTCTCGACGATCGCGCCCTCGATAC
AGAGTTGACTTCCGTAAAGAGGGGGCTGGATCGATCAATCGTGCATAGAG
ATCCTAGGGAGTACATTACATTTAGACACCATTTCCTACTGTTAGCTGTA
AACTATTATGCATAAATTAATAAATGCTTTAACGATTAAAAAAAAAAAAA
AAAAAA

LD37276.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-RA 1638 CG18766-RA 1..1638 1..1638 8190 100 Plus
CG18766.b 1941 CG18766.b 252..1883 1..1638 8075 99.6 Plus
CG18766.d 1941 CG18766.d 252..1883 1..1638 8075 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23065265..23066120 1637..782 4280 100 Minus
chr3R 27901430 chr3R 23066377..23066693 658..342 1585 100 Minus
chr3R 27901430 chr3R 23067940..23068159 220..1 1100 100 Minus
chr3R 27901430 chr3R 23066182..23066305 782..659 620 100 Minus
chr3R 27901430 chr3R 23066753..23066874 341..220 610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27242334..27243190 1638..782 4285 100 Minus
3R 32079331 3R 27243447..27243763 658..342 1585 100 Minus
3R 32079331 3R 27245010..27245229 220..1 1100 100 Minus
3R 32079331 3R 27243252..27243375 782..659 620 100 Minus
3R 32079331 3R 27243823..27243944 341..220 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26983165..26984021 1638..782 4285 100 Minus
3R 31820162 3R 26984278..26984594 658..342 1585 100 Minus
3R 31820162 3R 26985841..26986060 220..1 1100 100 Minus
3R 31820162 3R 26984083..26984206 782..659 620 100 Minus
3R 31820162 3R 26984654..26984775 341..220 610 100 Minus
Blast to na_te.dros performed 2019-03-15 22:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 664..715 995..943 127 73.6 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 682..719 986..949 118 78.9 Minus

LD37276.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:30:08 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23066377..23066693 342..658 100 <- Minus
chr3R 23066753..23066874 220..341 100 <- Minus
chr3R 23065265..23066120 782..1637 100 <- Minus
chr3R 23066183..23066305 659..781 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:43 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 1..927 336..1262 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:36 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 1..927 336..1262 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:21:45 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RB 1..927 336..1262 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:07 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 1..927 336..1262 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:35 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RB 1..927 336..1262 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:27 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 1..1637 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:36 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 1..1637 1..1637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:21:45 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 21..1651 1..1637 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:07 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 1..1637 1..1637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:35 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 21..1651 1..1637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:08 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27243823..27243944 220..341 100 <- Minus
3R 27242335..27243190 782..1637 100 <- Minus
3R 27243253..27243375 659..781 100 <- Minus
3R 27243447..27243763 342..658 100 <- Minus
3R 27245011..27245229 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:08 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27243823..27243944 220..341 100 <- Minus
3R 27242335..27243190 782..1637 100 <- Minus
3R 27243253..27243375 659..781 100 <- Minus
3R 27243447..27243763 342..658 100 <- Minus
3R 27245011..27245229 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:30:08 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27243823..27243944 220..341 100 <- Minus
3R 27242335..27243190 782..1637 100 <- Minus
3R 27243253..27243375 659..781 100 <- Minus
3R 27243447..27243763 342..658 100 <- Minus
3R 27245011..27245229 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:21:45 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23068057..23068912 782..1637 100 <- Minus
arm_3R 23068975..23069097 659..781 100 <- Minus
arm_3R 23069169..23069485 342..658 100 <- Minus
arm_3R 23069545..23069666 220..341 100 <- Minus
arm_3R 23070733..23070951 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:17 Download gff for LD37276.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26984084..26984206 659..781 100 <- Minus
3R 26983166..26984021 782..1637 100 <- Minus
3R 26984278..26984594 342..658 100 <- Minus
3R 26984654..26984775 220..341 100 <- Minus
3R 26985842..26986060 1..219 100   Minus

LD37276.pep Sequence

Translation from 335 to 1261

> LD37276.pep
MPYEKFNKKRRQWEDSGVLELIKLWKVCAYELRTIKRNGHLYVAMAKQLT
SLGVPVTALEVHFKVNNLTQRYRQEQKTFETTGIISTWKFYSQVDDVFKS
LAAHTGYKDKRMTSASNTSSLPSTSESPVWKNPMSQQEFNSNNTEGFYKT
EYGMHRHFMDHSQPPPNAGSVDNFMASSAAVAAVAAAASARLADNNMDQQ
MNTAAGGSGGSGGGGGNTNGGVANYQKIKKSHEDYDKFVDIVKNIVDTHK
STPDKVDTFGDFIKSYMKRWPERLQDEAINHITNYVIVKNMEHSMVSSHN
PEGVNNRQ*

LD37276.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18722-PA 308 GF18722-PA 1..308 1..308 1655 98.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12128-PA 308 GG12128-PA 1..308 1..308 1655 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16684-PA 311 GH16684-PA 1..311 1..308 1343 89.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-PC 308 CG18766-PC 1..308 1..308 1630 100 Plus
CG18766-PA 308 CG18766-PA 1..308 1..308 1630 100 Plus
CG18766-PB 308 CG18766-PB 1..308 1..308 1630 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22302-PA 311 GI22302-PA 1..311 1..308 1347 90.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23053-PA 309 GL23053-PA 1..309 1..308 1582 95.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15070-PA 309 GA15070-PA 1..309 1..308 1582 95.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10120-PA 308 GM10120-PA 1..308 1..308 1675 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19209-PA 71 GD19209-PA 1..71 238..308 238 69 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10487-PA 311 GJ10487-PA 1..311 1..308 1348 89.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22597-PA 307 GK22597-PA 1..307 1..308 1307 89.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10576-PA 303 GE10576-PA 1..303 1..308 1628 98.1 Plus

LD37276.hyp Sequence

Translation from 335 to 1261

> LD37276.hyp
MPYEKFNKKRRQWEDSGVLELIKLWKVCAYELRTIKRNGHLYVAMAKQLT
SLGVPVTALEVHFKVNNLTQRYRQEQKTFETTGIISTWKFYSQVDDVFKS
LAAHTGYKDKRMTSASNTSSLPSTSESPVWKNPMSQQEFNSNNTEGFYKT
EYGMHRHFMDHSQPPPNAGSVDNFMASSAAVAAVAAAASARLADNNMDQQ
MNTAAGGSGGSGGGGGNTNGGVANYQKIKKSHEDYDKFVDIVKNIVDTHK
STPDKVDTFGDFIKSYMKRWPERLQDEAINHITNYVIVKNMEHSMVSSHN
PEGVNNRQ*

LD37276.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-PC 308 CG18766-PC 1..308 1..308 1630 100 Plus
CG18766-PA 308 CG18766-PA 1..308 1..308 1630 100 Plus
CG18766-PB 308 CG18766-PB 1..308 1..308 1630 100 Plus