Clone LD37277 Report

Search the DGRC for LD37277

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:372
Well:77
Vector:pOT2
Associated Gene/Transcriptgkt-RA
Protein status:LD37277.pep: gold
Preliminary Size:2285
Sequenced Size:2206

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8825 2001-07-04 Blastp of sequenced clone
CG8825 2003-01-01 Sim4 clustering to Release 3
gkt 2008-04-29 Release 5.5 accounting
gkt 2008-08-15 Release 5.9 accounting
gkt 2008-12-18 5.12 accounting

Clone Sequence Records

LD37277.complete Sequence

2206 bp (2206 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051884

> LD37277.complete
CGCGCTTTGTGTTTTTTATTTGCACAGCATTTGCGAAATTCTATTTGTGT
TAATTGTGTTCGTTTAAGTTATCAAATAATAAATAGCAACATGAAGGAGT
GTCCTTATGGCGAAAAGTGCTACAGGAAGAATCCCATTCATTTTGGCGAG
TTCTCCCATGCCCACCTTGATGCCATTTATGCGAAGGGAAATGAATCGGG
GGACTATGAGATACCAGCCAATTACTCCAGCGAGATGATTCACACCCAGT
TGAAGCTGCTGGAGAAACTGTTTCCCAAGCAGGCAACCAACAAGGAACAG
GAAGCACATTCCTCTAGCTCAAAACCAGCCGTAACTGCTCCGGTTGCCAG
TGGATCCTCGAGTTCTGGGTCCCTAGATACCAATCCCAGTGGATCGTCAG
CCTCCGGGCCAGCTGCTTCCCAAGACACCTCAAATCTGGCCAAAAAACAG
AAGCTAAATGCCAAGAACATCAGAGATTATATTCCTGTGGTAATCGAAAA
GGGAGGAATGGCCAAAAAGCTGGAGCGGGCAGCTCCCTATAACATGTTCC
TCACCGCGATCACGGACTCCAAGCCCACCCACTCGGAGCCATTGAGCATA
ACGCTGCAGGAAATCCTGGACGAAAGTCTCGGCGAGATTGAGAGCACCGT
CCAAATTAACTTTATGGTGGACATTGGCTGGCTCCTGGGACACTACTACT
TTGCCGGGATACTGGACAAGCCACTTTTGCTGCTCTACGGCGACGAATCG
CCGGAGCTGCTTAGCATTGGGAAGTTCAAGCAGCAGGTCACGGCCATTCG
TGTCAAGATGCCCACGCCGTTTGCCACCTCGCACACCAAGATGATGTTCC
TCGGCTACAGCGATGGCTCCATGCGGGTGGTCATATCCACGGCGAATCTG
TACGAGGACGACTGGCACAATCGCACGCAGGGCCTGTGGATCAGTCCCAA
GCTGCCTGCTCTGCCGGTCGATGCGGATACGGGCGCTGGCGAAAGTCTGA
CGGGCTTCAAACAGGATCTGATGCTGTACTTGGTGGAGTACAAGATAAGC
CAGCTGCAGCCTTGGATAGCAAGGATTCGGAACAGTGATTTCAGTGCCAT
CAACGTTTTCTTCTTGGGCTCTGTGCCCGGAGGTCATCGCGAGGGCAGCG
TGCGTGGTCATCCATGGGGCCACGCCCGCTTGGCCTCCTTGCTCGCCAAA
CACGCGGCGCCCATCGACGATCGCATACCGGTCGTCTGCCAGAGCTCGAG
CATCGGCAGCCTGGGAGCCAACGTGCAGGCCTGGATTCAGCAGGATTTCG
TCAATAGCCTGAAGAAGGATTCCACGCCTGTGGGCAAGCTGCGCCAGATG
CCGCCCTTCAAGATGATCTATCCCAGCTACGGCAACGTCGCGGGCAGTCA
TGATGGAATGCTGGGCGGCGGGTGTTTGCCCTACGGCAAGAACACCAACG
ATAAGCAGCCATGGCTCAAGGACTATCTGCAGCAATGGAAGTCCAGCGAT
CGCTTTCGCTCGCGGGCAATGCCGCACATCAAGAGCTATACGCGCTTCAA
TCTGGAGGATCAGTCGGTGTACTGGTTCGTTTTAACCTCGGCGAATCTCT
CGAAGGCAGCCTGGGGCTGCTTTAACAAAAACTCGAATATCCAACCCTGC
CTGAGGATCGCCAACTATGAGGCTGGCGTCCTATTCCTGCCCAGATTTGT
GACTGGCGAGGACACCTTTCCTTTGGGTAACAATCGTGATGGAGTGCCAG
CGTTTCCGCTACCATACGACGTTCCATTGACGCCCTATGCTCCAGATGAT
AAGCCCTTCCTGATGGATTACCTACAAGGTTGAGATTAAGATACGTCTTA
TAAGGCCTCACAAATGGCTTTTGAATTCGTTGAAATATCTGGTCTATGGC
AACTATTCACGTTTGAATCAGTTACTTTTATTTATTTACTGCACATTAAA
TTAAGGAAATTTAATTTGCGATCCTATTTTTGGATTCAGGCATCTTTTTT
TTTCGGTAAATGTCCAATTCTGCCCATACTTCTTGGATCGGAGTGCTAAT
TCTGTTTGCACCGCAGGTAAAACCATCAAGTTCACTCAGTTTTCAGTACC
ATAATTTATTGTCCTTACTTATATTACTAAAACTAAATCAAAAGATTTAA
TGTTATATATTCATTGCATTAAAATTGTAATAACAACCAAAAAAAAAAAA
AAAAAA

LD37277.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
gkt-RA 2272 gkt-RA 81..2270 1..2190 10950 100 Plus
CG31953.a 911 CG31953.a 62..911 1294..2143 4250 100 Plus
CG31953-RA 633 CG31953-RA 34..441 1294..1701 2040 100 Plus
CG31953-RA 633 CG31953-RA 501..633 1701..1833 665 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3160882..3161479 1104..1701 2960 99.7 Plus
chr2L 23010047 chr2L 3159830..3160377 167..714 2740 100 Plus
chr2L 23010047 chr2L 3161539..3162026 1701..2188 2440 100 Plus
chr2L 23010047 chr2L 3162642..3163129 1701..2188 2335 98.6 Plus
chr2L 23010047 chr2L 3162175..3162582 1294..1701 2040 100 Plus
chr2L 23010047 chr2L 3160437..3160826 714..1103 1890 99 Plus
chr2L 23010047 chr2L 3159607..3159775 1..166 705 97.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3161255..3161852 1104..1701 2990 100 Plus
2L 23513712 2L 3160203..3160750 167..714 2740 100 Plus
2L 23513712 2L 3161912..3162401 1701..2190 2450 100 Plus
2L 23513712 2L 3163015..3163504 1701..2190 2450 100 Plus
2L 23513712 2L 3162548..3162955 1294..1701 2040 100 Plus
2L 23513712 2L 3160810..3161199 714..1103 1950 100 Plus
2L 23513712 2L 3159983..3160148 1..166 830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3161255..3161852 1104..1701 2990 100 Plus
2L 23513712 2L 3160203..3160750 167..714 2740 100 Plus
2L 23513712 2L 3163015..3163504 1701..2190 2450 100 Plus
2L 23513712 2L 3161912..3162401 1701..2190 2450 100 Plus
2L 23513712 2L 3162548..3162955 1294..1701 2040 100 Plus
2L 23513712 2L 3160810..3161199 714..1103 1950 100 Plus
2L 23513712 2L 3159983..3160148 1..166 830 100 Plus
Blast to na_te.dros performed 2019-03-15 18:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6115..6149 2161..2127 121 82.9 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 828..912 2003..1920 116 61.2 Minus

LD37277.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:32:57 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3159607..3159775 1..166 97 -> Plus
chr2L 3159830..3160376 167..713 100 -> Plus
chr2L 3160437..3160826 714..1103 98 -> Plus
chr2L 3160882..3161479 1104..1701 99 -> Plus
chr2L 3161540..3162026 1702..2188 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:38 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 1..1743 91..1833 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:06:51 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 1..1743 91..1833 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:08 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 1..1743 91..1833 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:44 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 1..1743 91..1833 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:28 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 28..2215 1..2188 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:38 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 28..2215 1..2188 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:06:51 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 34..2221 1..2188 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:08 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 28..2215 1..2188 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:44 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
gkt-RA 34..2221 1..2188 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:57 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3159983..3160148 1..166 100 -> Plus
2L 3160203..3160749 167..713 100 -> Plus
2L 3160810..3161199 714..1103 100 -> Plus
2L 3161255..3161852 1104..1701 100 -> Plus
2L 3161913..3162399 1702..2188 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:57 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3159983..3160148 1..166 100 -> Plus
2L 3160203..3160749 167..713 100 -> Plus
2L 3160810..3161199 714..1103 100 -> Plus
2L 3161255..3161852 1104..1701 100 -> Plus
2L 3161913..3162399 1702..2188 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:32:57 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3159983..3160148 1..166 100 -> Plus
2L 3160203..3160749 167..713 100 -> Plus
2L 3160810..3161199 714..1103 100 -> Plus
2L 3161255..3161852 1104..1701 100 -> Plus
2L 3161913..3162399 1702..2188 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:06:51 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3159983..3160148 1..166 100 -> Plus
arm_2L 3160203..3160749 167..713 100 -> Plus
arm_2L 3160810..3161199 714..1103 100 -> Plus
arm_2L 3161255..3161852 1104..1701 100 -> Plus
arm_2L 3161913..3162399 1702..2188 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:19 Download gff for LD37277.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3159983..3160148 1..166 100 -> Plus
2L 3160203..3160749 167..713 100 -> Plus
2L 3160810..3161199 714..1103 100 -> Plus
2L 3161255..3161852 1104..1701 100 -> Plus
2L 3161913..3162399 1702..2188 100   Plus

LD37277.hyp Sequence

Translation from 0 to 1832

> LD37277.hyp
RALCFLFAQHLRNSICVNCVRLSYQIINSNMKECPYGEKCYRKNPIHFGE
FSHAHLDAIYAKGNESGDYEIPANYSSEMIHTQLKLLEKLFPKQATNKEQ
EAHSSSSKPAVTAPVASGSSSSGSLDTNPSGSSASGPAASQDTSNLAKKQ
KLNAKNIRDYIPVVIEKGGMAKKLERAAPYNMFLTAITDSKPTHSEPLSI
TLQEILDESLGEIESTVQINFMVDIGWLLGHYYFAGILDKPLLLLYGDES
PELLSIGKFKQQVTAIRVKMPTPFATSHTKMMFLGYSDGSMRVVISTANL
YEDDWHNRTQGLWISPKLPALPVDADTGAGESLTGFKQDLMLYLVEYKIS
QLQPWIARIRNSDFSAINVFFLGSVPGGHREGSVRGHPWGHARLASLLAK
HAAPIDDRIPVVCQSSSIGSLGANVQAWIQQDFVNSLKKDSTPVGKLRQM
PPFKMIYPSYGNVAGSHDGMLGGGCLPYGKNTNDKQPWLKDYLQQWKSSD
RFRSRAMPHIKSYTRFNLEDQSVYWFVLTSANLSKAAWGCFNKNSNIQPC
LRIANYEAGVLFLPRFVTGEDTFPLGNNRDGVPAFPLPYDVPLTPYAPDD
KPFLMDYLQG*

LD37277.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
gkt-PA 580 CG8825-PA 1..580 31..610 3076 100 Plus

LD37277.pep Sequence

Translation from 90 to 1832

> LD37277.pep
MKECPYGEKCYRKNPIHFGEFSHAHLDAIYAKGNESGDYEIPANYSSEMI
HTQLKLLEKLFPKQATNKEQEAHSSSSKPAVTAPVASGSSSSGSLDTNPS
GSSASGPAASQDTSNLAKKQKLNAKNIRDYIPVVIEKGGMAKKLERAAPY
NMFLTAITDSKPTHSEPLSITLQEILDESLGEIESTVQINFMVDIGWLLG
HYYFAGILDKPLLLLYGDESPELLSIGKFKQQVTAIRVKMPTPFATSHTK
MMFLGYSDGSMRVVISTANLYEDDWHNRTQGLWISPKLPALPVDADTGAG
ESLTGFKQDLMLYLVEYKISQLQPWIARIRNSDFSAINVFFLGSVPGGHR
EGSVRGHPWGHARLASLLAKHAAPIDDRIPVVCQSSSIGSLGANVQAWIQ
QDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLPYGK
NTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVLTS
ANLSKAAWGCFNKNSNIQPCLRIANYEAGVLFLPRFVTGEDTFPLGNNRD
GVPAFPLPYDVPLTPYAPDDKPFLMDYLQG*

LD37277.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20606-PA 576 GF20606-PA 1..576 1..580 2668 85.5 Plus
Dana\GF20586-PA 51 GF20586-PA 11..51 267..307 202 87.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24923-PA 580 GG24923-PA 1..580 1..580 2876 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11458-PA 590 GH11458-PA 1..590 1..580 2571 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
gkt-PA 580 CG8825-PA 1..580 1..580 3076 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21930-PA 596 GI21930-PA 1..595 1..579 2442 75.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26495-PA 511 GL26495-PA 1..511 1..580 2031 69.8 Plus
Dper\GL22360-PA 946 GL22360-PA 1..505 1..508 1899 72.8 Plus
Dper\GL22360-PA 946 GL22360-PA 504..925 24..449 1808 81.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28884-PA 576 GA28884-PA 1..576 1..580 2640 84.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18399-PA 539 GM18399-PA 1..524 1..554 2628 89.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23212-PA 580 GD23212-PA 1..580 1..580 3041 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17827-PA 592 GJ17827-PA 1..592 1..580 2526 80.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15563-PA 572 GK15563-PA 1..572 1..580 2543 79.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18215-PA 582 GE18215-PA 1..580 1..580 2937 94.7 Plus