Clone LD37409 Report

Search the DGRC for LD37409

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:374
Well:9
Vector:pOT2
Associated Gene/TranscriptCG1104-RA
Protein status:LD37409.pep: gold
Preliminary Size:2762
Sequenced Size:2590

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1104 2001-01-01 Release 2 assignment
CG1104 2001-07-04 Blastp of sequenced clone
CG1104 2003-01-01 Sim4 clustering to Release 3
CG1104 2008-04-29 Release 5.5 accounting
CG1104 2008-08-15 Release 5.9 accounting
CG1104 2008-12-18 5.12 accounting

Clone Sequence Records

LD37409.complete Sequence

2590 bp (2590 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051887

> LD37409.complete
TGAAACCACCTTGTGAGCAGTAAGGTCACACTTGAGTTTTGTTGACGTTT
CATTTTAGGTTTTTTCAGATTGCATCTAAGCAGTCTAATATCTTTATCTT
TACTATCGCAGCGAATCATAACAAGATGGGTAGTGACTGGGACGAGATCA
AGCGCTTGGCCGCCGACTTTCAGAAGGCGCAGCTCACGTCTACGCTGCAG
AAGCTCTCGGAGCGAAACTGCGTGGAGATCGTCACGCTGCTGCTGGAGAA
GCAGATGCTGGAGGTGGTGTTCACCAACGATGGCAAGGAGTACATCACGC
CGGATCATCTGGAGCGCGAGATCCAGGACGAGTTGTACGTGAACGGAGGT
CGTGCCAACTTGGTGGAGGTCAGCAAAACCCTAAATGTGGATTTATCACG
AATCGAGCTGCTTGCCGAACGAATATCTGCGGAGAATCAAAGCGTACACC
TGGTACTGGGACAGCTAATCGACGAGGACTACATCAGTCATATTGCGCAG
GAGATCAACGAGAAGCTGGTTCAGCGAGGAGAGGTTTCCATTTCGGAATT
GGCTTCCCAGTTCGATCTGCCGTCGGACTTCCTGCAACACGACGTGGTCG
AAAAGCATCTAGGTAAGATTATTAAGGGTCGCCAGGATGCCTCAAATCCG
CGGGTGTTCTTCACTCAGGCCTACATCCAACGTTGCAAAGCGAAGATTCG
GGGAGCCCTGGCCGCCATTACCAGGCCCATAAATGTGGCTGTGATTCTTC
AGAAGATCGGTGTGCAGGAGAAGATCTTCTACTCGTTGCTGGACGAAATC
GCGCCAGCTGGCCAGGTTACCTCCAAGCAGGCCAACTCCCAATACGTGCC
GCACATCTATGCCAAGACGCAGGCTGACTGGGTGAACTCGTTCTACAAGC
AGAACAGCTTCCTTGAGTATGATGCCATTCAAAAGCTGGGAATTTCGGAT
GCCAAGTCCTACATTCGCAAGCAGTTCCCCAACGAAGAGTTTCTCTACCT
CAAGCGTGTGGCCCTTGGCGCTCGACTGGTGGAGCTCACGGTGGTCACGG
CGCTAAATGAGTGCAGTGCCACCAAGCAGTACCTGGATCTGACCACCATA
CTTCCATCGAATCTGTCCGAGGAGGATATCGAGGAGGTTTTCAGCACCAT
CATGGCCCAAAAGCATAGCAATCCCAGCAACTTTGTTTATCTTGATGGCA
TTGTATTTTCGCAACCATACCTCGCGCAATTGGTTCAGCCGTGTCAAGCG
TTGGCAGAGTCTCAGGCCAAGGCGGCCATCGATGGCGGCGTATACCAGCA
GTACATTGTGGAGAAGACGCTAGCGCAAAAGGGAAACGTGTCGACCCAAG
AGCTAGAGGACGAAGGCAAGGTGGACAAGCGCGACGAGCGGCGAAAGAAG
GCGTCCTCTGGCAAAGCAGGAGGAGGAGCCCAAGGGCGTGAGACCAAGAC
CAAGTCCACGAAGAAGCATCAACGCGGAAAGGCGGCAGCTCAGTTCGACA
GTGATGATGAGGACGATGCACAGCAAGGCTCTCGAGGTGGCGGTGGAGCA
AGCAAAAAGGCAGTTAAGCCATTGGAGCTAGTCAAGACAGCGGACATCGT
CAAACTGATTACTGCGAGTCTGGAAGAGGAGGGACTGGAGCATTTGTCGA
AATCCATTGCTTCCCTCTATACAAACCAATTTAATCAGACGGCCCTGGCA
CGTGCTCAGGAGTTGTTCGAGGCTACACCGCAGACAAATCGTCGCCAGAC
ACACGCTGCTATCCAGGATCGCATCAATACGCTTTTGATAGACATAAGGC
TCTATGAGAAGGGCTTAAAGCTTTTTCCGCAGGACACGCAAACCCAGTTG
GTTAAATACTTGCTAAAGTCATTGGGAAATGAGATTTGCAACGAACTTTC
GCTATACGTGGCCAGCGAGTGCAATCTGACTGTGAAAAATACCAACCTGA
ATGTGGACCAGCGCAATAAGTTGGCTCAGGAGTGCGAGGCCCAATACCGT
GCCGCGTTGCTTGAGCAAAACAAAGCCCTGAATAAGAGCATTGACGACTT
TGAACTGGCGACCGAAACGGTGCTGAAGACCTGCAGCATGATCATCAAGA
AGGTGGACAAGAAAAAGGATCGCCTGCTCATCGCAGACCACAAAAAGAAG
CTGCAGAAGCAGCTACTAGAGTGCAACGAGCCGGCACTGCTGCTGCACCT
GGCTGCACTGATCTTGTTCACCACGATCACTGGTAGCATTTTGCACGCGT
CCGGAAAATTCGTTTCTGCCATACTGCAGCATATTCGCGGCTCACTAAAC
GAGGACCAGAATGCTCTGTTGCTTCGGTATCACGATTTGGTCCTGCAAGT
TCTGCAGGCCATTCCCGATAGCAATGAGTCAAAACTGGCCAACGAACATT
TGCAGACAATGCAGAATCAAGTGGTGGAGCTAGCTCAAAACTTTTCACGT
GCATCGATTTCTAAGGCTGATTGATGATGCTCCTATATTCCAATCTTTCT
TCCCATGTCATTAAATTGCGTCTATGTAAATTGGTTCTGGTCTGCAATAG
ATTTTGCATTTGTTAAATTTTCAAAAAAAAAAAAAAAAAA

LD37409.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1104-RA 2665 CG1104-RA 70..2642 1..2573 12865 100 Plus
CG1104.a 2503 CG1104.a 40..2501 112..2573 12310 100 Plus
CG1104-RB 2425 CG1104-RB 32..2402 203..2573 11855 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2899211..2900211 1203..203 4990 99.9 Minus
chr3R 27901430 chr3R 2897945..2898603 2334..1676 3295 100 Minus
chr3R 27901430 chr3R 2898683..2899155 1675..1203 2365 100 Minus
chr3R 27901430 chr3R 2897653..2897891 2572..2334 1195 100 Minus
chr3R 27901430 chr3R 2900277..2900479 203..1 1015 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7073182..7074182 1203..203 5005 100 Minus
3R 32079331 3R 7071916..7072574 2334..1676 3295 100 Minus
3R 32079331 3R 7072654..7073126 1675..1203 2365 100 Minus
3R 32079331 3R 7071623..7071862 2573..2334 1200 100 Minus
3R 32079331 3R 7074248..7074450 203..1 1015 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6814013..6815013 1203..203 5005 100 Minus
3R 31820162 3R 6812747..6813405 2334..1676 3295 100 Minus
3R 31820162 3R 6813485..6813957 1675..1203 2365 100 Minus
3R 31820162 3R 6812454..6812693 2573..2334 1200 100 Minus
3R 31820162 3R 6815079..6815281 203..1 1015 100 Minus
Blast to na_te.dros performed 2019-03-16 11:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1030..1138 2098..2201 127 62.7 Plus

LD37409.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:17:13 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2897653..2897890 2335..2572 100 <- Minus
chr3R 2897945..2898603 1676..2334 100 <- Minus
chr3R 2898683..2899154 1204..1675 100 <- Minus
chr3R 2899211..2900211 203..1203 99 <- Minus
chr3R 2900278..2900479 1..202 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:49 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 1..2349 126..2474 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:40 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 1..2349 126..2474 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:37:51 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 1..2349 126..2474 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:11 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 1..2349 126..2474 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:47 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 1..2349 126..2474 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:32 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 1..2572 1..2572 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:40 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 1..2572 1..2572 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:51 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 3..2574 1..2572 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:11 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 1..2572 1..2572 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:47 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
CG1104-RA 3..2574 1..2572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:13 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7071624..7071861 2335..2572 100 <- Minus
3R 7071916..7072574 1676..2334 100 <- Minus
3R 7072654..7073125 1204..1675 100 <- Minus
3R 7073182..7074182 203..1203 100 <- Minus
3R 7074249..7074450 1..202 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:13 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7071624..7071861 2335..2572 100 <- Minus
3R 7071916..7072574 1676..2334 100 <- Minus
3R 7072654..7073125 1204..1675 100 <- Minus
3R 7073182..7074182 203..1203 100 <- Minus
3R 7074249..7074450 1..202 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:13 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7071624..7071861 2335..2572 100 <- Minus
3R 7071916..7072574 1676..2334 100 <- Minus
3R 7072654..7073125 1204..1675 100 <- Minus
3R 7073182..7074182 203..1203 100 <- Minus
3R 7074249..7074450 1..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:51 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2897346..2897583 2335..2572 100 <- Minus
arm_3R 2897638..2898296 1676..2334 100 <- Minus
arm_3R 2898376..2898847 1204..1675 100 <- Minus
arm_3R 2898904..2899904 203..1203 100 <- Minus
arm_3R 2899971..2900172 1..202 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:22 Download gff for LD37409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6812455..6812692 2335..2572 100 <- Minus
3R 6812747..6813405 1676..2334 100 <- Minus
3R 6813485..6813956 1204..1675 100 <- Minus
3R 6814013..6815013 203..1203 100 <- Minus
3R 6815080..6815281 1..202 100   Minus

LD37409.pep Sequence

Translation from 125 to 2473

> LD37409.pep
MGSDWDEIKRLAADFQKAQLTSTLQKLSERNCVEIVTLLLEKQMLEVVFT
NDGKEYITPDHLEREIQDELYVNGGRANLVEVSKTLNVDLSRIELLAERI
SAENQSVHLVLGQLIDEDYISHIAQEINEKLVQRGEVSISELASQFDLPS
DFLQHDVVEKHLGKIIKGRQDASNPRVFFTQAYIQRCKAKIRGALAAITR
PINVAVILQKIGVQEKIFYSLLDEIAPAGQVTSKQANSQYVPHIYAKTQA
DWVNSFYKQNSFLEYDAIQKLGISDAKSYIRKQFPNEEFLYLKRVALGAR
LVELTVVTALNECSATKQYLDLTTILPSNLSEEDIEEVFSTIMAQKHSNP
SNFVYLDGIVFSQPYLAQLVQPCQALAESQAKAAIDGGVYQQYIVEKTLA
QKGNVSTQELEDEGKVDKRDERRKKASSGKAGGGAQGRETKTKSTKKHQR
GKAAAQFDSDDEDDAQQGSRGGGGASKKAVKPLELVKTADIVKLITASLE
EEGLEHLSKSIASLYTNQFNQTALARAQELFEATPQTNRRQTHAAIQDRI
NTLLIDIRLYEKGLKLFPQDTQTQLVKYLLKSLGNEICNELSLYVASECN
LTVKNTNLNVDQRNKLAQECEAQYRAALLEQNKALNKSIDDFELATETVL
KTCSMIIKKVDKKKDRLLIADHKKKLQKQLLECNEPALLLHLAALILFTT
ITGSILHASGKFVSAILQHIRGSLNEDQNALLLRYHDLVLQVLQAIPDSN
ESKLANEHLQTMQNQVVELAQNFSRASISKAD*

LD37409.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17327-PA 784 GF17327-PA 1..784 1..782 3432 87.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10135-PA 782 GG10135-PA 1..782 1..782 3843 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17388-PA 783 GH17388-PA 1..783 1..782 3267 81.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ufl1-PC 782 CG1104-PC 1..782 1..782 3903 100 Plus
Ufl1-PA 782 CG1104-PA 1..782 1..782 3903 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23931-PA 783 GI23931-PA 1..783 1..782 3169 80.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22034-PA 785 GL22034-PA 1..785 1..782 3414 87.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10722-PA 785 GA10722-PA 1..785 1..782 3419 87 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10514-PA 782 GM10514-PA 1..782 1..782 4045 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19511-PA 782 GD19511-PA 1..782 1..782 4051 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24026-PA 778 GJ24026-PA 1..778 1..782 3121 80 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12257-PA 785 GK12257-PA 1..785 1..782 3097 80.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25823-PA 784 GE25823-PA 1..783 1..782 3752 93.4 Plus

LD37409.hyp Sequence

Translation from 125 to 2473

> LD37409.hyp
MGSDWDEIKRLAADFQKAQLTSTLQKLSERNCVEIVTLLLEKQMLEVVFT
NDGKEYITPDHLEREIQDELYVNGGRANLVEVSKTLNVDLSRIELLAERI
SAENQSVHLVLGQLIDEDYISHIAQEINEKLVQRGEVSISELASQFDLPS
DFLQHDVVEKHLGKIIKGRQDASNPRVFFTQAYIQRCKAKIRGALAAITR
PINVAVILQKIGVQEKIFYSLLDEIAPAGQVTSKQANSQYVPHIYAKTQA
DWVNSFYKQNSFLEYDAIQKLGISDAKSYIRKQFPNEEFLYLKRVALGAR
LVELTVVTALNECSATKQYLDLTTILPSNLSEEDIEEVFSTIMAQKHSNP
SNFVYLDGIVFSQPYLAQLVQPCQALAESQAKAAIDGGVYQQYIVEKTLA
QKGNVSTQELEDEGKVDKRDERRKKASSGKAGGGAQGRETKTKSTKKHQR
GKAAAQFDSDDEDDAQQGSRGGGGASKKAVKPLELVKTADIVKLITASLE
EEGLEHLSKSIASLYTNQFNQTALARAQELFEATPQTNRRQTHAAIQDRI
NTLLIDIRLYEKGLKLFPQDTQTQLVKYLLKSLGNEICNELSLYVASECN
LTVKNTNLNVDQRNKLAQECEAQYRAALLEQNKALNKSIDDFELATETVL
KTCSMIIKKVDKKKDRLLIADHKKKLQKQLLECNEPALLLHLAALILFTT
ITGSILHASGKFVSAILQHIRGSLNEDQNALLLRYHDLVLQVLQAIPDSN
ESKLANEHLQTMQNQVVELAQNFSRASISKAD*

LD37409.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1104-PC 782 CG1104-PC 1..782 1..782 3903 100 Plus
CG1104-PA 782 CG1104-PA 1..782 1..782 3903 100 Plus