BDGP Sequence Production Resources |
Search the DGRC for LD37470
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 374 |
Well: | 70 |
Vector: | pOT2 |
Associated Gene/Transcript | twf-RA |
Protein status: | LD37470.pep: gold |
Preliminary Size: | 1480 |
Sequenced Size: | 1375 |
Gene | Date | Evidence |
---|---|---|
CG3172 | 2001-01-01 | Release 2 assignment |
CG3172 | 2001-11-29 | Blastp of sequenced clone |
CG3172 | 2003-01-01 | Sim4 clustering to Release 3 |
twf | 2008-04-29 | Release 5.5 accounting |
twf | 2008-08-15 | Release 5.9 accounting |
twf | 2008-12-18 | 5.12 accounting |
1375 bp (1375 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069613
> LD37470.complete ATTTTTTCGGCAATATTAATTTTAGCTGTTGTCCAAATGTCTCACCAAAC GGGTATCCGAGCCAACGAGCAGCTGGCCAAGGTGTTCGGCAAAGCGAAGA ATGGTAAATTTCGCGTGATAAAAGTTTCGATCGAGAATGAGCAGCTTAGT TGCGGCGCCACGGCGGAGACGAAAAAGGATTGGGAGCGCGACTACGACAA GCTTATAGGTCCCCTACTGGAAAAGGATGTGCCCTGCTATATTCTCTATC GCCTGGACGCCAAGATCCCGCTGGGCTACAGTTGGCTACTTATCAGCTGG ACGCCGGACACGGCCAGCATCCGACAGAAGATGGTATACGCTTCCACGAA GGCCACGTTGAAAACGGAGTTCGGATCAGCATACATCACAGAGGAGCTGC ATGCCACCACTCTGGATGAGTGCACGCTGGAGGGCTATCGCCGGCACAAG CAGGATTTCGCAGCCCCAGCTCCATTGACCAGCAGGGAGGAGGAGCTGAA AGAGCTGCGAAAGACAGAGGTTCACACTGAGATCAATACGAATACGCGGC ACCAAACTCTGGGTGGGATCAATTGCCCGCTGAGCGAGGCAACCGTGGCT GCCGTTCAGGATTTGGTGCGCGGCAAGCACGACTACCTTCAGTTCCGCAT CGATCTGGAGGAGGAACAGATCCATGTTTCGCGTGCGGCCAAAGTGGAGC TCGCCGATCTGCCGAAGCAAGTGCCCGAGGATCATGCACGATACCACCTC TTCCTGTTTCGGCACACGCACGAGGGCGACTACTTTGAGTCGTACGTGTT CGTCTACTCCATGCCTGGATATTCCTGCTCCGTGCGCGAGCGCATGATGT ACTCAAGCTGTAAGGCTCCTTTTCTCGACGAGCTCGCGGCCCTTGGCGTG GAGGTTGTTAAGAAGCTTGAAATCGACAGCGGCAGCGAGCTGACCGAAGC CTTCTTGCAGGACGAGCTGCACCCAAAGAAGATTCTACACCGACCGGCTT TTGCCAAGCCCAAGGGGCCACCAAACCGAGGCGCCAAGCGCCTCACGCGT CCCACCGCAGAGGACTAAGTCTGAATCCCGATCCCACCGAGTCAATTCTG TTTATCGCCCTTCTACGTACTGTTTCCTAGCAGAGCATTTAATTTATTGT ATCCAATCGTTTATTTCTTTTGTGTTGTGTCTATCCCGTGTCTATATGTG TCCGTACGTCAGTCGATATCTTTAGAGGCACTAGGCATCAACTGAAACAT CGCATAGCAGCCGCCAAAGTGGGCTTCCTTAAATGTATTCTTGTCTATGT AACTTTAGATGGACATATATGCAATTTATTTAAATTAAAAAAAGTAACTA AGTTCAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 9947828..9948604 | 139..915 | 3795 | 99.2 | Plus |
chr3R | 27901430 | chr3R | 9948887..9949327 | 914..1354 | 2175 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 9947648..9947727 | 60..139 | 400 | 100 | Plus |
chr3R | 27901430 | chr3R | 9947530..9947590 | 1..61 | 305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14122974..14123750 | 139..915 | 3885 | 100 | Plus |
3R | 32079331 | 3R | 14124033..14124475 | 914..1356 | 2215 | 100 | Plus |
3R | 32079331 | 3R | 14122794..14122873 | 60..139 | 400 | 100 | Plus |
3R | 32079331 | 3R | 14122676..14122736 | 1..61 | 305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 13863805..13864581 | 139..915 | 3885 | 100 | Plus |
3R | 31820162 | 3R | 13864864..13865306 | 914..1356 | 2215 | 100 | Plus |
3R | 31820162 | 3R | 13863625..13863704 | 60..139 | 400 | 100 | Plus |
3R | 31820162 | 3R | 13863507..13863567 | 1..61 | 305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\ISBu3 | 993 | Dbuz\ISBu3 ISBU3 993bp | 253..323 | 12..80 | 116 | 64.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9947530..9947590 | 1..61 | 100 | -> | Plus |
chr3R | 9947650..9947727 | 62..139 | 100 | -> | Plus |
chr3R | 9947829..9948604 | 140..915 | 99 | -> | Plus |
chr3R | 9948889..9949293 | 916..1320 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 1..1032 | 37..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 1..1032 | 37..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 1..1032 | 37..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 1..1032 | 37..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 1..1032 | 37..1068 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 19..1373 | 1..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 19..1373 | 1..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 23..1377 | 1..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 19..1373 | 1..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
twf-RA | 23..1377 | 1..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14122676..14122736 | 1..61 | 100 | -> | Plus |
3R | 14122796..14122873 | 62..139 | 100 | -> | Plus |
3R | 14122975..14123750 | 140..915 | 100 | -> | Plus |
3R | 14124035..14124474 | 916..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14122676..14122736 | 1..61 | 100 | -> | Plus |
3R | 14122796..14122873 | 62..139 | 100 | -> | Plus |
3R | 14122975..14123750 | 140..915 | 100 | -> | Plus |
3R | 14124035..14124474 | 916..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14122676..14122736 | 1..61 | 100 | -> | Plus |
3R | 14122796..14122873 | 62..139 | 100 | -> | Plus |
3R | 14122975..14123750 | 140..915 | 100 | -> | Plus |
3R | 14124035..14124474 | 916..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9948398..9948458 | 1..61 | 100 | -> | Plus |
arm_3R | 9948518..9948595 | 62..139 | 100 | -> | Plus |
arm_3R | 9948697..9949472 | 140..915 | 100 | -> | Plus |
arm_3R | 9949757..9950196 | 916..1355 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13863806..13864581 | 140..915 | 100 | -> | Plus |
3R | 13864866..13865305 | 916..1355 | 100 | Plus | |
3R | 13863507..13863567 | 1..61 | 100 | -> | Plus |
3R | 13863627..13863704 | 62..139 | 100 | -> | Plus |
Translation from 0 to 1067
> LD37470.hyp IFSAILILAVVQMSHQTGIRANEQLAKVFGKAKNGKFRVIKVSIENEQLS CGATAETKKDWERDYDKLIGPLLEKDVPCYILYRLDAKIPLGYSWLLISW TPDTASIRQKMVYASTKATLKTEFGSAYITEELHATTLDECTLEGYRRHK QDFAAPAPLTSREEELKELRKTEVHTEINTNTRHQTLGGINCPLSEATVA AVQDLVRGKHDYLQFRIDLEEEQIHVSRAAKVELADLPKQVPEDHARYHL FLFRHTHEGDYFESYVFVYSMPGYSCSVRERMMYSSCKAPFLDELAALGV EVVKKLEIDSGSELTEAFLQDELHPKKILHRPAFAKPKGPPNRGAKRLTR PTAED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
twf-PA | 343 | CG3172-PA | 1..343 | 13..355 | 1796 | 100 | Plus |
Translation from 36 to 1067
> LD37470.pep MSHQTGIRANEQLAKVFGKAKNGKFRVIKVSIENEQLSCGATAETKKDWE RDYDKLIGPLLEKDVPCYILYRLDAKIPLGYSWLLISWTPDTASIRQKMV YASTKATLKTEFGSAYITEELHATTLDECTLEGYRRHKQDFAAPAPLTSR EEELKELRKTEVHTEINTNTRHQTLGGINCPLSEATVAAVQDLVRGKHDY LQFRIDLEEEQIHVSRAAKVELADLPKQVPEDHARYHLFLFRHTHEGDYF ESYVFVYSMPGYSCSVRERMMYSSCKAPFLDELAALGVEVVKKLEIDSGS ELTEAFLQDELHPKKILHRPAFAKPKGPPNRGAKRLTRPTAED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16237-PA | 343 | GF16237-PA | 1..343 | 1..343 | 1705 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16839-PA | 343 | GG16839-PA | 1..343 | 1..343 | 1841 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19702-PA | 342 | GH19702-PA | 1..340 | 1..343 | 1535 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
twf-PA | 343 | CG3172-PA | 1..343 | 1..343 | 1796 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23039-PA | 345 | GI23039-PA | 1..343 | 1..343 | 1576 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24238-PA | 345 | GL24238-PA | 1..343 | 1..343 | 1662 | 88.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16421-PA | 345 | GA16421-PA | 1..343 | 1..343 | 1666 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24151-PA | 343 | GM24151-PA | 1..343 | 1..343 | 1833 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18947-PA | 341 | GD18947-PA | 1..341 | 1..343 | 1770 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24628-PA | 345 | GJ24628-PA | 1..343 | 1..343 | 1583 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12190-PA | 345 | GK12190-PA | 1..343 | 1..343 | 1657 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24220-PA | 343 | GE24220-PA | 1..343 | 1..343 | 1838 | 99.7 | Plus |