Clone LD37516 Report

Search the DGRC for LD37516

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:375
Well:16
Vector:pOT2
Associated Gene/TranscriptCG11771-RA
Protein status:LD37516.pep: gold
Preliminary Size:2407
Sequenced Size:2516

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11771 2001-09-19 Blastp of sequenced clone
CG11771 2003-01-01 Sim4 clustering to Release 3
CG11771 2008-04-29 Release 5.5 accounting
CG11771 2008-08-15 Release 5.9 accounting
CG11771 2008-12-18 5.12 accounting

Clone Sequence Records

LD37516.complete Sequence

2516 bp (2516 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058664

> LD37516.complete
CGGTAATTCCAGCTCCAATAGCGGTCCAGGCGTGTTGTGTAAACGCTGGC
CCCCATTTCAGAATCCCAAATTCCGGCGCAAACTGTCCGGAATTGTACAT
ATCTGGATTAACGACTTCACCTAGGACATGCTAAATCTCCTACGAAGGCG
CCCAACGTCGGTGCCCCTCATCCGGGCCGCGCTTAGCGCTCCGCTGCACT
CAACGGAAAACCGGCCGGGTTACATAGTGCTGGTACCGGAGATCGGTGAG
GAGGGACCGCTAGGCGAGGGCGTGCTCAAGCCGGACGGACTTCCCGCCTT
CAGTGACATCACCATCGAGATGTGCTTGGGCGCCATTGGTCAGCAGGCAT
CGGCGGTGGAGAACTCGGTGAAGGCGCTGGAGAGCGACCTGCACAGTGGC
AAGCAGCTAAATGCCGCCAGCATCTTTCGGGAGCTGGACACCGTGACGGG
TCCACTGGAGACGACATGGGGTGTGGCCAAGGCTCTGTACCTGGGCAATT
CTACCCTGATACCCACCAAATCCTACATGAACATCCACGAACGAGCGCGT
AACGCTCGGGCAGCGAAGTTCTGCAATCAAACGGTGTATAAGGCACTCAA
GGATGCTTCGTCCGATTCGGGTCCAGATGAGCAGAGGATGCGACAGAAGT
TCCTGCTCGAGGGCAAGCTGAACGGGCTCACGCTGGACAAAGATAAGCAG
GATGGACTGAAAGAGCTGCTTACCCATTTGGGTCGAGAGAGAGCCAACTT
CAAGAACAAGGTCAACATGGCAGTGCACTCGTTTGGACAGATTATTACGG
ACTTCAATCTTGTAAGAGATTTCCCGCCTTCGCTTCTTGAGGCAACAGCC
CGCGATCCCGGACAACCTATGACGGGTCCTTGGAAGATAACCCTACAGCC
TCAAGTGGTCGATGGTTTTCTAAAGCACTGCCCAGAGCGAATGCAGCGTT
GGAACGTCTGGAGGGCCAGTGTGCTGAAGGCATCCTCGCAGCAGGAAAAA
TCCCTGGAGAACAGCACACACATCGAAAAAATACGCGGTTTGCGCAAGCG
ACAGGCAAATCTGTTGGGCTATGAAAGCTTTGCAGACATGTCCATGCAGA
CCAAAATGGTGGGCAGTGTGGACAACCTTAAGCAGATCTTTGCCAAGCTT
CTCAAGTTCGCCGGCCCTGCTCAAAGTGTGGAGCTGGAGAAACTACAGGG
CTTCGCTCAGGACAGTGGCTGTGAATACAAGCTGGAAGCCTACGACGTTG
CCTACTGGCGGCGCAAGCAACTGGCGGCGGAGCACGGTCTCCAAGATCAG
AAGCTCCGCGAGTTTTTCCCACTGCCCCGCGTTCTTTCCGGCTTGTTTGC
GCTGAGTGAAAAGCTCTTCGGCATCAAAATAGTTGAGCAGCCCAATGCGG
AGGTGTGGCATCCGGCAGTTAAGTTCTACGATGTGTTCGATGCTGATTCC
GTCAATAGCTCCACCCCGGTGGGTGGCTTTTATGTGGACTGCTATTCCAA
GGAGCACAAGTTCGGCAGAAACAATGGTTGGATGGTGGGCATACGGAACA
GCAATAAGTCTGCCGGGCTGACGCCTCTCTGTGCGCTGATATTTAACTTT
TCGGAGCCACAAAGTCCGGATGCCAAGCCCCCGCTTCTTGGATACGATGA
TCTGCAGATGCTCTTCAAGACTTTTGGAAGCGGACTCCAACACCTGCTCA
CCCAAGCGGGGTACAGCGATTTGGCGGGACTCTCAAACATCGAGTGGGAT
GCCTCTCAAGTGTCCGGTCATGTGATGAGCAACTTCCTCGACGATCCCAC
AGTGATTCGAAGCCTATCCGGACACTTTAGCAGCGGTGAGCCCTTGGAGG
CTGAGCTTTCACAGAAGATGCGATTGCTGAAGACTCAGTTGGCTGGCTAT
AATCTGTGCCAGGACCTCTACCTGGCGGATCTCGACGTGGAGCTGCACCG
CTCGAATGCCTTCTGGCTGGAGGTGGTTCGCAAGCTGTGGCCGGTTTATC
AATGCATGCCGCTGGACAAGAAGGACGCACATCCGTGCTCCCTGACCGAC
ATTTTTGCCGGAGATTGGGCGGCCGCCCAGTTCAGTCACTTGTATTCCCG
CCTCATAGCCGCCGACATTTCGAGCAGCTTTGCTGAGCAGCGAAGCGAAG
AGAACTACGCGGTCGTTGGCCGGCGCTACAAGCAGACCTTCCTCAGCTGC
GGCGGATCTGTGCCCACGGCGGAAGTGTTCCGTCGCTTCCAGGGTCGCGA
CCCGTCGGCCGAGGCACTTCTAAAGTCGCTGGACATATTTGAACCCTCCC
AGACCACAGATAACAACTGAGGGTCGCCCTCTGTTCCGCTAAAACGTTAT
CTATTGTGTGTAGTCAACAAATGCTGATCGATGGCAGCCTGTGGAGGCCC
GACGAGTGGCAACCTTATAGGAAAGTAAGCATTGGAGTATTGGAAAATAT
TTTAAAATAGTTTTGAAATGTATTCTGTTAAATATTTGTTTATTGGTCAA
AAAAAAAAAAAAAAAA

LD37516.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11771-RA 2960 CG11771-RA 126..2603 23..2500 12390 100 Plus
CG11771.a 2867 CG11771.a 29..2510 23..2500 12325 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20755480..20757746 232..2498 11335 100 Plus
chr3R 27901430 chr3R 20755214..20755423 23..232 1050 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24932294..24934562 232..2500 11345 100 Plus
3R 32079331 3R 24932028..24932237 23..232 1050 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24673125..24675393 232..2500 11345 100 Plus
3R 31820162 3R 24672859..24673068 23..232 1050 100 Plus
Blast to na_te.dros performed 2019-03-15 13:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 2445..2524 2418..2495 133 66.2 Plus

LD37516.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:45:34 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20755214..20755422 23..231 100 -> Plus
chr3R 20755480..20757746 232..2498 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:53 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 1..2193 128..2320 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:18 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 1..2193 128..2320 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:11:30 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 1..2193 128..2320 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:42 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 1..2193 128..2320 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:40:12 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 1..2193 128..2320 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:42 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 12..2487 23..2498 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:18 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 12..2487 23..2498 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:11:30 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 19..2494 23..2498 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:43 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 12..2487 23..2498 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:40:12 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
CG11771-RA 19..2494 23..2498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:34 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24932028..24932236 23..231 100 -> Plus
3R 24932294..24934560 232..2498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:34 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24932028..24932236 23..231 100 -> Plus
3R 24932294..24934560 232..2498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:45:34 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24932028..24932236 23..231 100 -> Plus
3R 24932294..24934560 232..2498 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:11:30 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20757750..20757958 23..231 100 -> Plus
arm_3R 20758016..20760282 232..2498 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:10 Download gff for LD37516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24672859..24673067 23..231 100 -> Plus
3R 24673125..24675391 232..2498 100   Plus

LD37516.pep Sequence

Translation from 127 to 2319

> LD37516.pep
MLNLLRRRPTSVPLIRAALSAPLHSTENRPGYIVLVPEIGEEGPLGEGVL
KPDGLPAFSDITIEMCLGAIGQQASAVENSVKALESDLHSGKQLNAASIF
RELDTVTGPLETTWGVAKALYLGNSTLIPTKSYMNIHERARNARAAKFCN
QTVYKALKDASSDSGPDEQRMRQKFLLEGKLNGLTLDKDKQDGLKELLTH
LGRERANFKNKVNMAVHSFGQIITDFNLVRDFPPSLLEATARDPGQPMTG
PWKITLQPQVVDGFLKHCPERMQRWNVWRASVLKASSQQEKSLENSTHIE
KIRGLRKRQANLLGYESFADMSMQTKMVGSVDNLKQIFAKLLKFAGPAQS
VELEKLQGFAQDSGCEYKLEAYDVAYWRRKQLAAEHGLQDQKLREFFPLP
RVLSGLFALSEKLFGIKIVEQPNAEVWHPAVKFYDVFDADSVNSSTPVGG
FYVDCYSKEHKFGRNNGWMVGIRNSNKSAGLTPLCALIFNFSEPQSPDAK
PPLLGYDDLQMLFKTFGSGLQHLLTQAGYSDLAGLSNIEWDASQVSGHVM
SNFLDDPTVIRSLSGHFSSGEPLEAELSQKMRLLKTQLAGYNLCQDLYLA
DLDVELHRSNAFWLEVVRKLWPVYQCMPLDKKDAHPCSLTDIFAGDWAAA
QFSHLYSRLIAADISSSFAEQRSEENYAVVGRRYKQTFLSCGGSVPTAEV
FRRFQGRDPSAEALLKSLDIFEPSQTTDNN*

LD37516.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16315-PA 729 GF16315-PA 1..729 1..730 3359 85.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11339-PA 730 GG11339-PA 1..729 1..729 3834 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19428-PA 726 GH19428-PA 1..726 1..730 3170 79.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11771-PA 730 CG11771-PA 1..730 1..730 3801 100 Plus
CG7791-PA 699 CG7791-PA 270..680 306..718 219 21.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22218-PA 723 GI22218-PA 1..723 1..730 3062 76.8 Plus
Dmoj\GI19399-PA 702 GI19399-PA 234..691 260..722 205 20.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24403-PA 581 GL24403-PA 173..581 321..730 1806 80 Plus
Dper\GL24403-PA 581 GL24403-PA 1..186 1..184 681 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11189-PA 730 GA11189-PA 1..730 1..730 3244 80.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26648-PA 730 GM26648-PA 1..730 1..730 3855 97.9 Plus
Dsec\GM16499-PA 699 GM16499-PA 274..680 310..718 230 21.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21149-PA 727 GD21149-PA 1..687 1..687 3645 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24339-PA 725 GJ24339-PA 1..725 1..730 3147 78.8 Plus
Dvir\GJ22461-PA 701 GJ22461-PA 233..690 260..722 201 20.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12976-PA 730 GK12976-PA 1..730 1..730 3075 77 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23534-PA 730 GE23534-PA 1..730 1..730 3828 97 Plus

LD37516.hyp Sequence

Translation from 127 to 2319

> LD37516.hyp
MLNLLRRRPTSVPLIRAALSAPLHSTENRPGYIVLVPEIGEEGPLGEGVL
KPDGLPAFSDITIEMCLGAIGQQASAVENSVKALESDLHSGKQLNAASIF
RELDTVTGPLETTWGVAKALYLGNSTLIPTKSYMNIHERARNARAAKFCN
QTVYKALKDASSDSGPDEQRMRQKFLLEGKLNGLTLDKDKQDGLKELLTH
LGRERANFKNKVNMAVHSFGQIITDFNLVRDFPPSLLEATARDPGQPMTG
PWKITLQPQVVDGFLKHCPERMQRWNVWRASVLKASSQQEKSLENSTHIE
KIRGLRKRQANLLGYESFADMSMQTKMVGSVDNLKQIFAKLLKFAGPAQS
VELEKLQGFAQDSGCEYKLEAYDVAYWRRKQLAAEHGLQDQKLREFFPLP
RVLSGLFALSEKLFGIKIVEQPNAEVWHPAVKFYDVFDADSVNSSTPVGG
FYVDCYSKEHKFGRNNGWMVGIRNSNKSAGLTPLCALIFNFSEPQSPDAK
PPLLGYDDLQMLFKTFGSGLQHLLTQAGYSDLAGLSNIEWDASQVSGHVM
SNFLDDPTVIRSLSGHFSSGEPLEAELSQKMRLLKTQLAGYNLCQDLYLA
DLDVELHRSNAFWLEVVRKLWPVYQCMPLDKKDAHPCSLTDIFAGDWAAA
QFSHLYSRLIAADISSSFAEQRSEENYAVVGRRYKQTFLSCGGSVPTAEV
FRRFQGRDPSAEALLKSLDIFEPSQTTDNN*

LD37516.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11771-PA 730 CG11771-PA 1..730 1..730 3801 100 Plus
CG7791-PA 699 CG7791-PA 270..680 306..718 219 21.3 Plus