Clone LD37574 Report

Search the DGRC for LD37574

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:375
Well:74
Vector:pOT2
Associated Gene/Transcriptyps-RA
Protein status:LD37574.pep: gold
Preliminary Size:1870
Sequenced Size:1774

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5654 2001-01-01 Release 2 assignment
CG5654 2001-10-10 Blastp of sequenced clone
CG5654 2003-01-01 Sim4 clustering to Release 3
yps 2008-04-29 Release 5.5 accounting
yps 2008-08-15 Release 5.9 accounting
yps 2008-12-18 5.12 accounting

Clone Sequence Records

LD37574.complete Sequence

1774 bp (1774 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061440

> LD37574.complete
TCATGTTTCACTTCCGGAGCTTGCGAACAAAATAGAATCGCTAAGGCAAA
GAAAACCCTGCGAGTGGCGAGTGTTTTAAGATCACACTCAAAAACAACAT
CCAAAGTGGTTAGTGGCAGTTGAGAGAGTGCCCAAGACCCCGAATACCAG
CCGGGCAGACACGAACAACACCAGCAGCAGCAGCACCACCATCATCAACA
GCAGCAGCAGCATTTCCCGCTTTTCGTTTTCGTCGTCGCCGAACAACAAA
TAACAAAACCACGACAAACGATGGCTGATGCCGCGGAGAGTAAGCCACTG
GCCGCCGAACAGCAGCAGGCGCAGCAGCAGCCGGAGCAGCAGCAGAATCC
GCCGAATCCGCAGGAGCAGGATCACGAGCAGGAGCCGCTGGACGAGCTGC
AGGGACAGCAGGGCCAGCCCGCTCCGCCCACCAAGGAAGTCATCGCCACC
AAAGTCACCGGCACCGTCAAGTGGTTCAACGTGAAGAGCGGCTACGGCTT
CATCAACCGCAACGACACCAGAGAGGATGTCTTTGTGCACCAGAGCGCCA
TTGCGCGGAACAACCCCAAAAAGGCGGTCCGCTCGGTGGGCGACGGTGAG
GTCGTTGAGTTCGACGTGGTCATTGGTGAGAAGGGCAACGAGGCGGCCAA
CGTGACCGGTCCCTCCGGTGAGCCGGTGCGGGGCAGTCAGTTTGCAGCGG
ACAAGCGCCGTAACTTCCGTCCCTGGATGAAGAAGAATCGCCGCAAGGAT
GGCGAAGTGGAAGGCGAAGACGCCGAATCGTCGGCCCAGCAGCAACAGCA
GCAGGCGGCACCAATCGTTGACGGGCAGCCGCAGCAGCAGGTGCAGTCCG
GCCCGCGTCAACCACGACAGAACTTCCGCCGAGGACCACCCGGTGGACCG
CCCGGAGGACCTCGAGGTGGCCCCCGAGGACCGCCTGGTGGAGCTCCCGG
TGGCCCCCGGCGCTACAACAACTATTATCTGCGTCAGCCGAGACGCGGCC
TGGGCGGCGGTGACGGCAGCGCCGAGCCCGGTGTCCACGATCAGAATCCC
GAGGGTCTGCAGCGCGGCGAGGGTCAGGGACCACGTCGCGGTGGAGGCCC
ACCGGGCGGACCCCAGAGGCGCTTCTTCCGACGCAACTTCAACAATGGTC
CACCGCCACCACGCCGCGACGGCGGAGAATACATTCAAGGCCAGGGACCG
CCACGCCCACAACAGCCACGTCCACGTCGCCAGAGGAAACCAAATGGCCC
TGGCGGTGGTTCGGAGCAGCAGCCAGAGAAGAACGGCGCTCAAGAGCTGC
AAAATACAACCACAGAGAGCACTGCATAGAAAAGGATCCGAAAGGATCTA
AATCGTCAACCGACAAACAAAAACATCGTCAGCAGTAGCCGCAGTATATA
ACTACAATCGCAGAAAAACAGCAGCAGCAGCCCATCCTCAACATCAGCGA
CCAATGCAACATCATGGTGCAATAAGATCAGCAAATGTTGCAGCAAATTT
TGCTAAATGAGCCGCCGCGTTTTTTCGGTTTGTTTGCTTTTTGTTTAGTT
TCGTAGGGCAGAGAATCAATTGTACAACTCATACCACAACAAAACTAACA
TCCTCAAAATTTCAATCAAATTCAAAAACAAACAAAAAATTGTATAAAAT
TTCCATCAAGCCTGGCCGTCGTCAAAAAATTGCATAATTGTGGAATTTTT
ATTGTATGAACCAACAAACCAAACACGAAAACATAAATAAATTTCAATTA
CACTGCAAAAAAAAAAAAAAAAAA

LD37574.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
yps-RA 2070 yps-RA 161..1918 1..1758 8790 100 Plus
yps.b 2323 yps.b 161..1918 1..1758 8790 100 Plus
yps.a 1816 yps.a 24..1105 1..1082 5395 99.9 Plus
yps.a 1816 yps.a 1095..1664 1189..1758 2850 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12113590..12114328 1183..445 3695 100 Minus
chr3L 24539361 chr3L 12112433..12112909 1756..1280 2385 100 Minus
chr3L 24539361 chr3L 12115464..12115908 445..1 2225 100 Minus
chr3L 24539361 chr3L 12113429..12113526 1281..1184 490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12122837..12123575 1183..445 3695 100 Minus
3L 28110227 3L 12121678..12122156 1758..1280 2395 100 Minus
3L 28110227 3L 12124712..12125156 445..1 2225 100 Minus
3L 28110227 3L 12122676..12122773 1281..1184 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12115937..12116675 1183..445 3695 100 Minus
3L 28103327 3L 12114778..12115256 1758..1280 2395 100 Minus
3L 28103327 3L 12117812..12118256 445..1 2225 100 Minus
3L 28103327 3L 12115776..12115873 1281..1184 490 100 Minus
Blast to na_te.dros performed 2019-03-16 19:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2596..2966 164..521 256 56.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 7799..7904 1404..1503 136 64.2 Plus

LD37574.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:00:08 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12112433..12112907 1282..1756 100 <- Minus
chr3L 12113429..12113526 1184..1281 100 <- Minus
chr3L 12113590..12114327 446..1183 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:55 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1059 271..1329 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:47 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1059 271..1329 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:48 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1059 271..1329 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:48 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1059 271..1329 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:48:30 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1059 271..1329 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:05 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1705 52..1756 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:47 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1705 52..1756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:48 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1750 7..1756 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:48 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1705 52..1756 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:30 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
yps-RA 1..1750 7..1756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:08 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12121680..12122154 1282..1756 100 <- Minus
3L 12122676..12122773 1184..1281 100 <- Minus
3L 12122837..12123574 446..1183 100 <- Minus
3L 12124712..12125156 1..445 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:08 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12121680..12122154 1282..1756 100 <- Minus
3L 12122676..12122773 1184..1281 100 <- Minus
3L 12122837..12123574 446..1183 100 <- Minus
3L 12124712..12125156 1..445 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:00:08 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12121680..12122154 1282..1756 100 <- Minus
3L 12122676..12122773 1184..1281 100 <- Minus
3L 12122837..12123574 446..1183 100 <- Minus
3L 12124712..12125156 1..445 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:48 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12115776..12115873 1184..1281 100 <- Minus
arm_3L 12117812..12118256 1..445 100   Minus
arm_3L 12114780..12115254 1282..1756 100 <- Minus
arm_3L 12115937..12116674 446..1183 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:56 Download gff for LD37574.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12114780..12115254 1282..1756 100 <- Minus
3L 12115776..12115873 1184..1281 100 <- Minus
3L 12115937..12116674 446..1183 100 <- Minus
3L 12117812..12118256 1..445 100   Minus

LD37574.pep Sequence

Translation from 270 to 1328

> LD37574.pep
MADAAESKPLAAEQQQAQQQPEQQQNPPNPQEQDHEQEPLDELQGQQGQP
APPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPK
KAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRNFR
PWMKKNRRKDGEVEGEDAESSAQQQQQQAAPIVDGQPQQQVQSGPRQPRQ
NFRRGPPGGPPGGPRGGPRGPPGGAPGGPRRYNNYYLRQPRRGLGGGDGS
AEPGVHDQNPEGLQRGEGQGPRRGGGPPGGPQRRFFRRNFNNGPPPPRRD
GGEYIQGQGPPRPQQPRPRRQRKPNGPGGGSEQQPEKNGAQELQNTTTES
TA*

LD37574.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10852-PA 347 GF10852-PA 1..347 1..352 955 79.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13856-PA 297 GG13856-PA 1..297 1..352 681 76.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16919-PA 345 GH16919-PA 27..155 41..172 574 84.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
yps-PA 352 CG5654-PA 1..352 1..352 1915 100 Plus
yps-PB 340 CG5654-PB 1..337 1..337 1841 100 Plus
AGO2-PB 1214 CG7439-PB 15..321 2..335 178 24 Plus
AGO2-PC 1217 CG7439-PC 18..324 2..335 178 24 Plus
CG10555-PB 926 CG10555-PB 291..594 14..327 164 26.1 Plus
CG10555-PA 926 CG10555-PA 291..594 14..327 164 26.1 Plus
frm-PD 268 CG10625-PD 118..244 205..335 156 39.9 Plus
frm-PA 268 CG10625-PA 118..244 205..335 156 39.9 Plus
frm-PE 652 CG10625-PE 502..628 205..335 156 39.9 Plus
frm-PB 682 CG10625-PB 532..658 205..335 156 39.9 Plus
frm-PC 682 CG10625-PC 532..658 205..335 156 39.9 Plus
frm-PJ 752 CG10625-PJ 118..230 205..328 154 39.8 Plus
frm-PI 766 CG10625-PI 118..230 205..328 154 39.8 Plus
frm-PH 1180 CG10625-PH 532..644 205..328 154 39.8 Plus
lin-28-PA 195 CG17334-PA 29..123 51..150 152 38 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13673-PA 335 GI13673-PA 33..335 49..352 852 75.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15684-PA 335 GL15684-PA 1..335 1..352 829 69.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23502-PA 335 GA23502-PA 1..335 1..352 829 69.4 Plus
Dpse\GA14466-PA 192 GA14466-PA 33..120 49..141 169 40.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24682-PA 1378 GM24682-PA 1..302 1..299 1448 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12750-PA 352 GD12750-PA 1..352 1..352 1719 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14010-PA 340 GJ14010-PA 33..340 49..352 840 76 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16710-PA 344 GK16710-PA 1..344 1..352 785 61.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20150-PA 353 GE20150-PA 1..353 1..352 1135 92.9 Plus

LD37574.hyp Sequence

Translation from 270 to 1328

> LD37574.hyp
MADAAESKPLAAEQQQAQQQPEQQQNPPNPQEQDHEQEPLDELQGQQGQP
APPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPK
KAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRNFR
PWMKKNRRKDGEVEGEDAESSAQQQQQQAAPIVDGQPQQQVQSGPRQPRQ
NFRRGPPGGPPGGPRGGPRGPPGGAPGGPRRYNNYYLRQPRRGLGGGDGS
AEPGVHDQNPEGLQRGEGQGPRRGGGPPGGPQRRFFRRNFNNGPPPPRRD
GGEYIQGQGPPRPQQPRPRRQRKPNGPGGGSEQQPEKNGAQELQNTTTES
TA*

LD37574.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
yps-PA 352 CG5654-PA 1..352 1..352 1915 100 Plus
yps-PB 340 CG5654-PB 1..337 1..337 1841 100 Plus
AGO2-PB 1214 CG7439-PB 15..321 2..335 178 24 Plus
AGO2-PC 1217 CG7439-PC 18..324 2..335 178 24 Plus
CG10555-PB 926 CG10555-PB 291..594 14..327 164 26.1 Plus