Clone LD37627 Report

Search the DGRC for LD37627

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:376
Well:27
Vector:pOT2
Associated Gene/Transcriptpros-RL
Protein status:LD37627.pep: gold
Sequenced Size:5530

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17228 2004-07-14 Blastp of sequenced clone
pros 2008-04-29 Release 5.5 accounting
pros 2008-08-15 Release 5.9 accounting
pros 2008-12-18 5.12 accounting

Clone Sequence Records

LD37627.complete Sequence

5530 bp assembled on 2006-11-09

GenBank Submission: BT015263

> LD37627.complete
GCCGTCGGCAAGACAACAACGTGCGCGGCTAAAAAACCAACAGCAGCACA
GGCGACCACGACAACAGCCAAGAACTCGAACTCGAACTCGAACGTGAACG
TGAACGTGAACGTGAATTCAAACGGTAGCGGAAACGGAAACGCGAACAGT
AAAGTGAATCGTCGTTCGCGTCAAAGATCCTTGAGCAAAGACATTAACAA
TCAGCCAGCGAGCAGTAATAGCAATAGCAACAGTAGTAACAACAGCAGCA
ACAGCAACGGCGGAGCAACGGCAACCGCTGCTGGCTTCATGAGTAGCGCT
GCCGCGGCTGCTGCGGGTGCCGCTGGTGGAGGAGCCCTGTTCCAACCACA
ATCGGTCAGCACGGCCAATAGCAGTAGTAGTAACAATAACAATTCAAGCA
CACCGGCTGCTCTTGCCACCCATTCGCCCACGAGCAACTCACCAGTTTCG
GGCGCCAGTTCGGCATCGTCCTTGTTGACGGCCGCCTTTGGCAACCTGTT
TGGTGGCTCCTCGGCCAAGATGCTGAACGAGCTGTTTGGCCGCCAGATGA
AGCAGGCCCAGGACGCAACGAGTGGCCTGCCCCAGAGTTTGGACAACGCC
ATGCTGGCCGCCGCCATGGAGACGGCCACCAGTGCCGAGCTGTTGATCGG
CAGCCTCAATTCCACGTCCAAGTTGCTGCAGCAGCAGCACAATAACAACA
GCATTGCTCCCGCCAATAGCACGCCCATGAGCAATGGCACAAATGCATCG
ATCTCGCCGGGATCGGCCCACAGTTCCAGTCACTCGCATCAGGGAGTCTC
GCCCAAAGGAAGTCGCAGGGTGTCGGCCTGCAGTGATCGCTCCTTGGAGG
CGGCAGCTGCTGATGTTGCTGGTGGCTCGCCGCCACGAGCGGCATCGGTG
AGCTCGCTGAACGGAGGAGCCAGCAGTGGGGAGCAGCACCAGTCTCAGTT
GCAACACGACCTGGTGGCACATCACATGCTGCGCAATATACTGCAGGGCA
AGAAGGAGCTGATGCAACTGGATCAGGAGCTGCGCACCGCCATGCAGCAG
CAGCAACAGCAGCTGCAGGAGAAGGAGCAACTGCACTCCAAGCTTAACAA
TAATAATAACAACAATATTGCTGCCACCGCCAACAACAATAACAACACCA
CAATGGAGAGTATCAATCTGATCGACGATTCGGAAATGGCTGACATCAAG
ATCAAGAGTGAGCCCCAGACGGCTCCGCAGCCACAGCAATCGCCGCACGG
AAGCAGCCACAGCAGCCGAAGTGGGAGCGGCAGTGGGAGCCACAGCAGCA
TGGCCAGCGATGGCAGCCTGCGACGCAAGTCCTCCGACTCCCTGGACAGC
CACGGGGCGCAGGACGATGCGCAGGACGAGGAAGATGCTGCGCCCACTGG
CCAGAGATCCGAGAGCAGGGCTCCGGAGGAGCCACAGCTGCCCACCAAAA
AAGAATCCGTGGACGATATGCTTGACGAGGTGGAGCTCCTGGGTCTGCAC
TCCCGCGGATCCGATATGGATAGCCTGGCCTCGCCCAGTCACTCGGACAT
GATGCTGCTGGACAAGGACGATGTCCTGGACGAGGACGACGACGATGATT
GCGTGGAGCAGAAAACATCCGGCAGCGGATGTCTCAAGAAACCCGGCATG
GACTTGAAGCGCGCTCGCGTCGAGAACATCGTGTCGGGAATGCGATGCAG
TCCATCCTCCGGATTAGCGCAGGCAGGACAACTGCAGGTAAATGGTTGTA
AGAAGCGCAAGCTCTACCAGCCCCAGCAACACGCCATGGAGCGTTATGTG
GCCGCCGCAGCTGGTCTGAATTTCGGCCTCAATCTGCAGAGCATGATGCT
CGACCAGGAGGACAGTGAGTCCAATGAGCTGGAGTCCCCGCAAATCCAAC
AGAAGCGTGTGGAGAAAAATGCGCTCAAGTCCCAGCTGCGATCCATGCAG
GAGCAGCTCGCGGAGATGCAGCAGAAATATGTGCAGCTGTGCTCGCGCAT
GGAGCAGGAATCCGAGTGCCAGGAACTTGACCAGGACCAGGATGTGGAAC
AAGAACAAGAGCCGGACAATGGCAGCAGTGATCATATCGAGCTGTCGCCC
TCGCCCACTTTGACCGGAGATGGTGACGTTAGTCCCAACCACAAGGAGGA
AACTGGGCAGGAACGACCTGGTTCCAGCTCACCCTCACCATCGCCCCTAA
AACCCAAGACATCGCTGGGCGAGAGCAGCGACTCAGGCGCTAACATGCTA
TCCCAGATGATGAGCAAGATGATGTCCGGCAAGCTGCACAATCCACTGGT
GGGTGTGGGTCATCCCGCCCTGCCTCAAGGATTTCCTCCACTGCTCCAGC
ACATGGGCGACATGTCGCACGCAGCCGCCATGTACCAGCAGTTCTTCTTC
GAGCAGGAGGCGCGCATGGCCAAGGAAGCCGCCGAGCAGCAGCAGCAACA
GCAGCAACAGCAACAACAGCAGCAGCAGCAACAGCAGCAGGAGCAACAGC
GCCGCTTCGAGCAGGAGCAACAAGAGCAGCAGCGACGCAAGGAGGAGCAG
CAACAGCAGATCCAGCGCCAGCAGCAGCATCTGCAACAGCTGCAGCAACA
GCAAATGGAGCAGCAACATGTGGCCACTGCCGCCCCCAGGCCGCAGATGC
ACCACCCAGCGCCCGCCCGCCTGCCCACACGAATGGGCGGTGCTGCTGGC
CACACGGCCCTCAAGTCCGAACTGTCGGAAAAGTTCCAAATGCTGCGCGC
CAACAACAATAGCTCAATGATGCGCATGTCGGGCACGGACCTGGAGGGAC
TGGCCGATGTGCTCAAGTCCGAGATCACCACCTCGCTGTCCGCTCTGGTG
GACACCATTGTGACCCGCTTCGTCCACCAACGGCGGCTGTTCAGCAAGCA
AGCGGACTCCGTGACCGCGGCTGCCGAGCAGCTGAACAAGGACCTGCTGC
TGGCTTCGCAGATCCTCGACCGGAAGTCACCGCGCACCAAGGTGGCGGAC
AGGCCCCAGAACGGACCCACGCCCGCAACACAATCAGCGGCTGCCATGTT
CCAGGCGCCCAAAACGCCACAGGGCATGAATCCGGTGGCCGCCGCCGCGC
TCTACAACTCGATGACCGGACCCTTCTGCCTGCCGCCCGATCAGCAGCAG
CAGCAACAGACCGCCCAGCAGCAACAGTCCGCCCAGCAGCAGCAGCAGAG
CTCGCAGCAGACACAACAGCAGCTGGAGCAGAACGAGGCCCTCAGCCTGG
TGGTGACACCAAAGAAGAAGCGCCATAAGGTGACCGATACGCGCATCACG
CCGCGCACCGTCAGCCGCATTCTTGCCCAGGATGGCGTTGTGCCGCCCAC
CGGAGGCCCACCGTCAACCCCCCAGCAGCAGCAACAGCAGCAGCAACAGC
AACAGCAGCAGCAACAACAGCAGCAGCAACAGGCGTCGAACGGCGGCAAC
AGCAATGCCACGCCCGCCCAGAGTCCGACGAGGAGCAGTGGAGGAGCCGC
ATACCATCCGCAACCACCGCCACCACCACCACCCATGATGCCCGTGTCCT
TGCCCACCTCCGTGGCCATACCTAATCCCTCGCTGCACGAGTCCAAGGTC
TTTTCACCGTACTCGCCGTTCTTCAATCCGCACGCAGCCGCTGGCCAGGC
AACGGCGGCCCAGCTCCATCAGCACCACCAGCAGCACCACCCGCACCACC
AGTCCATGCAGCTGTCCTCCAGTCCGCCGGGCAGCTTGGGCGCTCTGATG
GACTCGCGCGACTCGCCGCCGCTGCCCCACCCGCCGTCGATGCTCCATCC
CGCCTTGCTGGCCGCCGCCCATCACGGCGGATCGCCGGACTACAAGACCT
GCCTGCGGGCCGTCATGGACGCCCAGGATCGCCAGTCCGAGTGCAACTCG
GCCGACATGCAGTTTGACGGCATGGCTCCTACTTCTTCTACATTGACACC
GATGCACCTGCGCAAGGCCAAGCTGATGTTCTTCTGGGTGCGCTATCCCA
GCTCCGCGGTGCTCAAGATGTACTTCCCGGACATCAAGTTCAACAAGAAC
AACACAGCACAATTGGTGAAATGGTTCTCGAACTTCCGAGAATTCTACTA
CATACAAATGGAGAAATATGCACGACAAGCTGTCACCGAAGGCATCAAGA
CACCCGATGATCTGTTGATTGCTGGAGATAGTGAATTGTATCGCGTGCTC
AATTTGCACTACAATCGCAATAACCACATTGAGGTACCCCAGAATTTCCG
CTTCGTGGTCGAATCGACTCTGCGGGAGTTCTTCCGTGCAATACAGGGTG
GCAAAGACACCGAGCAGTCGTGGAAGAAGTCCATATACAAGATCATCTCG
CGCATGGACGATCCCGTGCCCGAGTACTTCAAGTCGCCCAATTTTTTAGA
GCAGCTGGAATAAGTGGAGGAGTTGGCGCTGCCGACGCTGCCATTGCCGC
ATCCACTGGGAATGCCACCGCCCATCAGTCCGGCCAGCACCTCCACCACC
TGCAGCACCGCTACCACCACCAACTCCAGGCCCGGCAGCAGCCATCCGAA
GGCGAAGCGCAGGCCAAAGCTAAAAGGCTAAACCTGCGCAGGAAACACGA
CTGGATATGACCAACTACCCAGCAAATAAAATCGAGGATAACCAATTCGA
CAAACAGTATCCACACACAGGGCAGAAACTTAGACATAGCTGAGAGATTT
GCAATAGCACACGAGTCGAAAACGCGTTTAGAAAACACATTGAGCAAAAT
ATTTTTTCAAAAATTTCCAAAAACTACACAACTAAACACACACACAAAAA
TACAATTTCAAAACACATGAACCTCAGCAAAAGAGCGACAAGAAAAAAGA
AGCATGTGGGCCACGGATATACAAATCCAGTGGGCCGATTGAGCAAAACC
AAAACTTAACATAGAGCAGCAAGTCTTAATCTAATAATGTGAAATAGTGC
AAATTGAAAGAAAACCTGAGCCACACACCTGAGAACACCCACACACCGAG
CGTAATTTACAGGCAGTGTAAACTGTACTCGCCGTTGGTTTGTTAGTTGA
AATTTTTTTGAAAATATTTACAGCAGATTACGTATACGTATGAATATTTA
ACAAATAGTTGAGCCGTCTAATGATCTACCGAAAGTTGACACACATTCCA
CAAGGAAATACCTACACAATAACCACACGCATTCCACGCACACGCACACA
CACACACGCTCGCATCGGTACAAAGTGTGTGTTCATTTGAGAGAGAGAGA
GAGAGAGAGAGAAAATCGCTCGGCCAAACAGGAAGTGGTTTTTATCGCAC
TGCTTGGCCGACCGACTTTCCGGTAAGCAGTTTCCACCGCCCGGTTGCAC
ACTGCTTTACAAAAGCAGGCGCAGCTCTGACGGACGGAAATCGGGAATTA
ATCTTAAATGTTTAAAAGTCACCCGATCACTAAGGTTGCTACTTCCCTTT
ATCCCACATTTAAGCGCTAAGCATATATTCGATGTCTATTAAGCGAAACT
AAAAGCAAAAACAAAAAAAAAAAAAAAAAA

LD37627.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
pros.o 21281 pros.o 912..3948 1..3037 15185 100 Plus
pros.m 21540 pros.m 1171..4207 1..3037 15185 100 Plus
pros.f 7573 pros.f 1171..4207 1..3037 15185 100 Plus
pros.o 21281 pros.o 4429..6918 3035..5524 12450 100 Plus
pros.m 21540 pros.m 4688..7177 3035..5524 12450 100 Plus
pros.f 7573 pros.f 4688..7177 3035..5524 12450 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7198291..7201327 1..3037 15125 99.9 Plus
chr3R 27901430 chr3R 7217387..7218667 4232..5512 6405 100 Plus
chr3R 27901430 chr3R 7201808..7202706 3035..3933 4465 99.8 Plus
chr3R 27901430 chr3R 7203524..7203678 3934..4088 775 100 Plus
chr3R 27901430 chr3R 7216999..7217147 4088..4236 745 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11372802..11375838 1..3037 15185 100 Plus
3R 32079331 3R 11391916..11393208 4232..5524 6465 100 Plus
3R 32079331 3R 11376319..11377217 3035..3933 4495 100 Plus
3R 32079331 3R 11378035..11378189 3934..4088 775 100 Plus
3R 32079331 3R 11391528..11391676 4088..4236 745 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11113633..11116669 1..3037 15185 100 Plus
3R 31820162 3R 11132747..11134039 4232..5524 6465 100 Plus
3R 31820162 3R 11117150..11118048 3035..3933 4495 100 Plus
3R 31820162 3R 11118866..11119020 3934..4088 775 100 Plus
3R 31820162 3R 11132359..11132507 4088..4236 745 100 Plus
Blast to na_te.dros performed 2019-03-16 16:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6962 985..1249 229 61.3 Plus
roo 9092 roo DM_ROO 9092bp 1065..1164 184..279 228 75.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6923 171..390 223 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6957 199..428 220 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..7085 932..1290 220 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2594..2966 1044..1418 217 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6869 206..297 203 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2539 1034..1261 201 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6916 998..1166 195 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6691..6841 1017..1166 194 59.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6914 224..410 194 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6884 184..281 193 70.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2391 211..278 191 77.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2520 1053..1266 189 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2426..2664 13..258 189 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2489 1001..1166 185 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2464 997..1150 181 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6813..6901 184..274 179 72 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2403 192..278 175 72.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2474 185..392 173 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2674 991..1318 170 55.1 Plus
roo 9092 roo DM_ROO 9092bp 1092..1171 197..274 169 72.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2418 211..281 168 72.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6864 206..273 168 75.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2385 206..278 166 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6955 1045..1268 160 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2482 1015..1150 159 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2577..2979 10..419 158 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2813..2950 1014..1150 156 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6915 932..1085 153 61.2 Plus
roo 9092 roo DM_ROO 9092bp 1048..1158 1003..1114 152 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1060..1133 209..281 151 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2535 36..261 150 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2677 932..1270 150 52.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1599 192..273 149 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2517..2903 934..1310 148 53.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6944 921..1084 148 58.5 Plus
roo 9092 roo DM_ROO 9092bp 1062..1143 1004..1085 148 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2911..2976 211..278 146 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2718..2987 953..1239 143 54.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2424 184..258 140 71.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2729..2938 192..400 140 57.5 Plus
roo 9092 roo DM_ROO 9092bp 1055..1153 1018..1115 140 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1539..1664 1048..1167 137 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2384..2538 930..1081 137 56.1 Plus
roo 9092 roo DM_ROO 9092bp 1058..1121 219..281 137 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1631 1015..1117 132 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2856 8..275 129 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1489..1575 188..278 120 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1083..1146 1001..1067 120 68.7 Plus

LD37627.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:32:09 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7198291..7201327 1..3037 99 -> Plus
chr3R 7201811..7202706 3038..3933 99 -> Plus
chr3R 7203524..7203678 3934..4088 100 -> Plus
chr3R 7217000..7217144 4089..4233 100 -> Plus
chr3R 7217389..7218667 4234..5512 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:40:45 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RG 613..5025 1..4413 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:44:05 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RH 613..5025 1..4413 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:19 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RH 613..5025 1..4413 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:48 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RG 613..5025 1..4413 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:31:22 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RH 613..5025 1..4413 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:40:45 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RG 816..6327 1..5512 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:44:05 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RH 1960..7471 1..5512 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:19 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RH 2227..7738 1..5512 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:48 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RG 816..6327 1..5512 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:31:22 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
pros-RH 2227..7738 1..5512 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:09 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11372802..11375838 1..3037 100 -> Plus
3R 11376322..11377217 3038..3933 100 -> Plus
3R 11378035..11378189 3934..4088 100 -> Plus
3R 11391529..11391673 4089..4233 100 -> Plus
3R 11391918..11393196 4234..5512 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:09 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11372802..11375838 1..3037 100 -> Plus
3R 11376322..11377217 3038..3933 100 -> Plus
3R 11378035..11378189 3934..4088 100 -> Plus
3R 11391529..11391673 4089..4233 100 -> Plus
3R 11391918..11393196 4234..5512 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:32:09 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11372802..11375838 1..3037 100 -> Plus
3R 11376322..11377217 3038..3933 100 -> Plus
3R 11378035..11378189 3934..4088 100 -> Plus
3R 11391529..11391673 4089..4233 100 -> Plus
3R 11391918..11393196 4234..5512 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:19 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7198524..7201560 1..3037 100 -> Plus
arm_3R 7202044..7202939 3038..3933 100 -> Plus
arm_3R 7203757..7203911 3934..4088 100 -> Plus
arm_3R 7217251..7217395 4089..4233 100 -> Plus
arm_3R 7217640..7218918 4234..5512 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:57:53 Download gff for LD37627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11118866..11119020 3934..4088 100 -> Plus
3R 11132360..11132504 4089..4233 100 -> Plus
3R 11113633..11116669 1..3037 100 -> Plus
3R 11117153..11118048 3038..3933 100 -> Plus
3R 11132749..11134027 4234..5512 100   Plus

LD37627.hyp Sequence

Translation from 0 to 4412

> LD37627.hyp
AVGKTTTCAAKKPTAAQATTTTAKNSNSNSNVNVNVNVNSNGSGNGNANS
KVNRRSRQRSLSKDINNQPASSNSNSNSSNNSSNSNGGATATAAGFMSSA
AAAAAGAAGGGALFQPQSVSTANSSSSNNNNSSTPAALATHSPTSNSPVS
GASSASSLLTAAFGNLFGGSSAKMLNELFGRQMKQAQDATSGLPQSLDNA
MLAAAMETATSAELLIGSLNSTSKLLQQQHNNNSIAPANSTPMSNGTNAS
ISPGSAHSSSHSHQGVSPKGSRRVSACSDRSLEAAAADVAGGSPPRAASV
SSLNGGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQ
QQQQLQEKEQLHSKLNNNNNNNIAATANNNNNTTMESINLIDDSEMADIK
IKSEPQTAPQPQQSPHGSSHSSRSGSGSGSHSSMASDGSLRRKSSDSLDS
HGAQDDAQDEEDAAPTGQRSESRAPEEPQLPTKKESVDDMLDEVELLGLH
SRGSDMDSLASPSHSDMMLLDKDDVLDEDDDDDCVEQKTSGSGCLKKPGM
DLKRARVENIVSGMRCSPSSGLAQAGQLQVNGCKKRKLYQPQQHAMERYV
AAAAGLNFGLNLQSMMLDQEDSESNELESPQIQQKRVEKNALKSQLRSMQ
EQLAEMQQKYVQLCSRMEQESECQELDQDQDVEQEQEPDNGSSDHIELSP
SPTLTGDGDVSPNHKEETGQERPGSSSPSPSPLKPKTSLGESSDSGANML
SQMMSKMMSGKLHNPLVGVGHPALPQGFPPLLQHMGDMSHAAAMYQQFFF
EQEARMAKEAAEQQQQQQQQQQQQQQQQQQEQQRRFEQEQQEQQRRKEEQ
QQQIQRQQQHLQQLQQQQMEQQHVATAAPRPQMHHPAPARLPTRMGGAAG
HTALKSELSEKFQMLRANNNSSMMRMSGTDLEGLADVLKSEITTSLSALV
DTIVTRFVHQRRLFSKQADSVTAAAEQLNKDLLLASQILDRKSPRTKVAD
RPQNGPTPATQSAAAMFQAPKTPQGMNPVAAAALYNSMTGPFCLPPDQQQ
QQQTAQQQQSAQQQQQSSQQTQQQLEQNEALSLVVTPKKKRHKVTDTRIT
PRTVSRILAQDGVVPPTGGPPSTPQQQQQQQQQQQQQQQQQQQQASNGGN
SNATPAQSPTRSSGGAAYHPQPPPPPPPMMPVSLPTSVAIPNPSLHESKV
FSPYSPFFNPHAAAGQATAAQLHQHHQQHHPHHQSMQLSSSPPGSLGALM
DSRDSPPLPHPPSMLHPALLAAAHHGGSPDYKTCLRAVMDAQDRQSECNS
ADMQFDGMAPTSSTLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKN
NTAQLVKWFSNFREFYYIQMEKYARQAVTEGIKTPDDLLIAGDSELYRVL
NLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIYKIIS
RMDDPVPEYFKSPNFLEQLE*

LD37627.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
pros-PH 1674 CG17228-PH 205..1674 1..1470 7535 100 Plus
pros-PM 1703 CG17228-PM 205..1703 1..1470 7495 98.1 Plus
pros-PL 1374 CG17228-PL 1..1374 97..1470 7055 100 Plus
pros-PJ 1403 CG17228-PJ 1..1403 97..1470 7015 97.9 Plus
pros-PI 1835 CG17228-PI 205..1437 1..1237 5205 85.5 Plus

LD37627.pep Sequence

Translation from 288 to 4412

> LD37627.pep
MSSAAAAAAGAAGGGALFQPQSVSTANSSSSNNNNSSTPAALATHSPTSN
SPVSGASSASSLLTAAFGNLFGGSSAKMLNELFGRQMKQAQDATSGLPQS
LDNAMLAAAMETATSAELLIGSLNSTSKLLQQQHNNNSIAPANSTPMSNG
TNASISPGSAHSSSHSHQGVSPKGSRRVSACSDRSLEAAAADVAGGSPPR
AASVSSLNGGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRT
AMQQQQQQLQEKEQLHSKLNNNNNNNIAATANNNNNTTMESINLIDDSEM
ADIKIKSEPQTAPQPQQSPHGSSHSSRSGSGSGSHSSMASDGSLRRKSSD
SLDSHGAQDDAQDEEDAAPTGQRSESRAPEEPQLPTKKESVDDMLDEVEL
LGLHSRGSDMDSLASPSHSDMMLLDKDDVLDEDDDDDCVEQKTSGSGCLK
KPGMDLKRARVENIVSGMRCSPSSGLAQAGQLQVNGCKKRKLYQPQQHAM
ERYVAAAAGLNFGLNLQSMMLDQEDSESNELESPQIQQKRVEKNALKSQL
RSMQEQLAEMQQKYVQLCSRMEQESECQELDQDQDVEQEQEPDNGSSDHI
ELSPSPTLTGDGDVSPNHKEETGQERPGSSSPSPSPLKPKTSLGESSDSG
ANMLSQMMSKMMSGKLHNPLVGVGHPALPQGFPPLLQHMGDMSHAAAMYQ
QFFFEQEARMAKEAAEQQQQQQQQQQQQQQQQQQEQQRRFEQEQQEQQRR
KEEQQQQIQRQQQHLQQLQQQQMEQQHVATAAPRPQMHHPAPARLPTRMG
GAAGHTALKSELSEKFQMLRANNNSSMMRMSGTDLEGLADVLKSEITTSL
SALVDTIVTRFVHQRRLFSKQADSVTAAAEQLNKDLLLASQILDRKSPRT
KVADRPQNGPTPATQSAAAMFQAPKTPQGMNPVAAAALYNSMTGPFCLPP
DQQQQQQTAQQQQSAQQQQQSSQQTQQQLEQNEALSLVVTPKKKRHKVTD
TRITPRTVSRILAQDGVVPPTGGPPSTPQQQQQQQQQQQQQQQQQQQQAS
NGGNSNATPAQSPTRSSGGAAYHPQPPPPPPPMMPVSLPTSVAIPNPSLH
ESKVFSPYSPFFNPHAAAGQATAAQLHQHHQQHHPHHQSMQLSSSPPGSL
GALMDSRDSPPLPHPPSMLHPALLAAAHHGGSPDYKTCLRAVMDAQDRQS
ECNSADMQFDGMAPTSSTLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIK
FNKNNTAQLVKWFSNFREFYYIQMEKYARQAVTEGIKTPDDLLIAGDSEL
YRVLNLHYNRNNHIEVPQNFRFVVESTLREFFRAIQGGKDTEQSWKKSIY
KIISRMDDPVPEYFKSPNFLEQLE*

LD37627.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16857-PA 1738 GF16857-PA 337..1738 17..1374 4918 84.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18089-PA 1709 GG18089-PA 303..1709 1..1374 7179 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21437-PA 1791 GH21437-PA 342..1791 56..1374 3942 70.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
pros-PL 1374 CG17228-PL 1..1374 1..1374 7055 100 Plus
pros-PH 1674 CG17228-PH 301..1674 1..1374 7055 100 Plus
pros-PM 1703 CG17228-PM 301..1703 1..1374 7015 97.9 Plus
pros-PJ 1403 CG17228-PJ 1..1403 1..1374 7015 97.9 Plus
pros-PK 1535 CG17228-PK 1..1137 1..1141 4725 84.3 Plus
pros-PI 1835 CG17228-PI 301..1437 1..1141 4725 84.3 Plus
pros-PK 1535 CG17228-PK 138..1535 22..1374 2501 43.9 Plus
pros-PI 1835 CG17228-PI 438..1835 22..1374 2501 43.9 Plus
Ptip-PA 2294 CG32133-PA 210..971 216..1061 313 21.9 Plus
Ptip-PA 2294 CG32133-PA 665..1299 515..1165 294 24.4 Plus
Ptip-PA 2294 CG32133-PA 354..904 517..1063 292 24.5 Plus
Ptip-PA 2294 CG32133-PA 209..707 686..1165 290 26.3 Plus
velo-PC 1833 CG10107-PC 54..434 687..1076 279 27.2 Plus
velo-PA 1833 CG10107-PA 54..434 687..1076 279 27.2 Plus
Ptip-PA 2294 CG32133-PA 194..960 238..1048 276 21.1 Plus
kis-PF 5191 CG3696-PF 151..762 535..1146 273 25.2 Plus
kis-PE 5252 CG3696-PE 151..762 535..1146 273 25.2 Plus
kis-PA 5322 CG3696-PA 151..762 535..1146 273 25.2 Plus
kis-PD 5343 CG3696-PD 151..762 535..1146 273 25.2 Plus
kis-PC 5517 CG3696-PC 151..762 535..1146 273 25.2 Plus
Smr-PF 3601 CG4013-PF 65..620 700..1225 250 24 Plus
Smr-PE 3601 CG4013-PE 65..620 700..1225 250 24 Plus
Smr-PD 3601 CG4013-PD 65..620 700..1225 250 24 Plus
Ptip-PA 2294 CG32133-PA 154..848 412..1167 245 20.7 Plus
Ncoa6-PC 2265 CG14023-PC 1151..1493 716..1048 245 31 Plus
Ncoa6-PD 2266 CG14023-PD 1152..1494 716..1048 245 31 Plus
Ncoa6-PF 2467 CG14023-PF 1152..1494 716..1048 245 31 Plus
Ncoa6-PC 2265 CG14023-PC 1151..1495 717..1048 241 30.2 Plus
Ncoa6-PD 2266 CG14023-PD 1152..1496 717..1048 241 30.2 Plus
Ncoa6-PF 2467 CG14023-PF 1152..1496 717..1048 241 30.2 Plus
Ptip-PA 2294 CG32133-PA 545..1362 216..1063 238 21.1 Plus
Ncoa6-PC 2265 CG14023-PC 800..1169 684..1048 237 26.4 Plus
Ncoa6-PD 2266 CG14023-PD 801..1170 684..1048 237 26.4 Plus
Ncoa6-PF 2467 CG14023-PF 801..1170 684..1048 237 26.4 Plus
CG14442-PC 1008 CG14442-PC 54..435 718..1050 236 27.3 Plus
dikar-PG 3080 CG42799-PG 2092..3066 306..1174 232 20.4 Plus
dikar-PC 3080 CG42799-PC 2092..3066 306..1174 232 20.4 Plus
dikar-PD 3222 CG42799-PD 2234..3208 306..1174 232 20.4 Plus
dikar-PF 3261 CG42799-PF 2234..3208 306..1174 232 20.4 Plus
velo-PC 1833 CG10107-PC 14..731 408..1107 231 20.9 Plus
velo-PA 1833 CG10107-PA 14..731 408..1107 231 20.9 Plus
tai-PE 2014 CG13109-PE 719..1856 12..1180 223 21 Plus
CG14442-PD 529 CG14442-PD 54..459 718..1050 222 26 Plus
CG15740-PB 975 CG15740-PB 168..711 683..1219 222 23.6 Plus
tai-PD 2026 CG13109-PD 719..1868 12..1180 221 21.2 Plus
tai-PC 2026 CG13109-PC 719..1868 12..1180 221 21.2 Plus
X11Lbeta-PD 2066 CG32677-PD 259..805 570..1070 221 24.2 Plus
Smr-PF 3601 CG4013-PF 32..260 522..785 220 26.4 Plus
Smr-PE 3601 CG4013-PE 32..260 522..785 220 26.4 Plus
Smr-PD 3601 CG4013-PD 32..260 522..785 220 26.4 Plus
Smr-PG 3607 CG4013-PG 32..266 522..785 217 26 Plus
CG32767-PG 1280 CG32767-PG 177..469 494..776 215 26 Plus
CG32767-PH 1281 CG32767-PH 177..469 494..776 215 26 Plus
CG32767-PF 1281 CG32767-PF 177..469 494..776 215 26 Plus
CG32767-PE 1281 CG32767-PE 177..469 494..776 215 26 Plus
CG32767-PD 1281 CG32767-PD 177..469 494..776 215 26 Plus
CG32767-PC 1281 CG32767-PC 177..469 494..776 215 26 Plus
CG43689-PF 1251 CG43689-PF 288..669 711..1088 213 26.5 Plus
CG43689-PH 1618 CG43689-PH 258..639 711..1088 213 26.5 Plus
CG43689-PI 1648 CG43689-PI 288..669 711..1088 213 26.5 Plus
CG43689-PG 1648 CG43689-PG 288..669 711..1088 213 26.5 Plus
Rbfox1-PF 763 CG32062-PF 499..610 675..790 211 46.6 Plus
CG15365-PC 821 CG15365-PC 219..599 704..1048 211 28 Plus
CG15365-PA 821 CG15365-PA 219..599 704..1048 211 28 Plus
Rbfox1-PL 858 CG32062-PL 516..627 675..790 211 46.6 Plus
Rbfox1-PE 865 CG32062-PE 499..610 675..790 211 46.6 Plus
Rbfox1-PJ 889 CG32062-PJ 565..676 675..790 211 46.6 Plus
Rbfox1-PK 921 CG32062-PK 579..690 675..790 211 46.6 Plus
Rbfox1-PH 962 CG32062-PH 596..707 675..790 211 46.6 Plus
Wnk-PO 2243 CG7177-PO 694..1275 511..1070 210 22.6 Plus
Ncoa6-PC 2265 CG14023-PC 408..979 490..1074 207 21.6 Plus
Ncoa6-PD 2266 CG14023-PD 409..980 490..1074 207 21.6 Plus
Ncoa6-PF 2467 CG14023-PF 409..980 490..1074 207 21.6 Plus
CG15740-PB 975 CG15740-PB 167..772 471..1147 203 22.3 Plus
kis-PF 5191 CG3696-PF 297..828 533..1050 202 23.8 Plus
kis-PE 5252 CG3696-PE 297..828 533..1050 202 23.8 Plus
kis-PA 5322 CG3696-PA 297..828 533..1050 202 23.8 Plus
kis-PD 5343 CG3696-PD 297..828 533..1050 202 23.8 Plus
kis-PC 5517 CG3696-PC 297..828 533..1050 202 23.8 Plus
Smr-PF 3601 CG4013-PF 2735..3240 606..1070 197 22.4 Plus
Smr-PE 3601 CG4013-PE 2735..3240 606..1070 197 22.4 Plus
Smr-PD 3601 CG4013-PD 2735..3240 606..1070 197 22.4 Plus
Smr-PG 3607 CG4013-PG 2741..3246 606..1070 197 22.4 Plus
Wnk-PO 2243 CG7177-PO 594..1165 517..1046 196 22.8 Plus
Wnk-PO 2243 CG7177-PO 879..1208 496..827 196 24.1 Plus
CG14442-PC 1008 CG14442-PC 3..433 632..1050 194 24.1 Plus
velo-PC 1833 CG10107-PC 73..633 691..1151 191 23.1 Plus
velo-PA 1833 CG10107-PA 73..633 691..1151 191 23.1 Plus
CG15365-PC 821 CG15365-PC 553..626 707..780 187 48.6 Plus
CG15365-PA 821 CG15365-PA 553..626 707..780 187 48.6 Plus
X11Lbeta-PD 2066 CG32677-PD 29..268 960..1147 178 31.1 Plus
CG15365-PC 821 CG15365-PC 552..614 715..777 177 50.8 Plus
CG15365-PA 821 CG15365-PA 552..614 715..777 177 50.8 Plus
Smr-PF 3601 CG4013-PF 125..369 515..749 176 24 Plus
Smr-PE 3601 CG4013-PE 125..369 515..749 176 24 Plus
Smr-PD 3601 CG4013-PD 125..369 515..749 176 24 Plus
CG15365-PC 821 CG15365-PC 558..624 700..768 175 53.6 Plus
CG15365-PA 821 CG15365-PA 558..624 700..768 175 53.6 Plus
Smr-PG 3607 CG4013-PG 136..375 517..749 173 23.3 Plus
Wnk-PO 2243 CG7177-PO 876..1236 478..802 169 24.1 Plus
CG15365-PC 821 CG15365-PC 564..630 705..771 166 49.3 Plus
CG15365-PA 821 CG15365-PA 564..630 705..771 166 49.3 Plus
CG15365-PC 821 CG15365-PC 543..621 711..795 165 38.8 Plus
CG15365-PA 821 CG15365-PA 543..621 711..795 165 38.8 Plus
velo-PC 1833 CG10107-PC 50..248 916..1147 164 27.9 Plus
velo-PA 1833 CG10107-PA 50..248 916..1147 164 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22696-PA 1759 GI22696-PA 332..1759 56..1374 4047 72.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11998-PA 997 GL11998-PA 1..399 519..905 1266 78.6 Plus
Dper\GL11998-PA 997 GL11998-PA 557..914 916..1267 1231 81.8 Plus
Dper\GL11997-PA 311 GL11997-PA 16..267 17..239 549 62.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14403-PB 1701 GA14403-PB 270..1701 17..1374 4534 77.9 Plus
Dpse\GA14403-PC 1870 GA14403-PC 270..1231 17..917 2695 74.8 Plus
Dpse\GA14403-PC 1870 GA14403-PC 1404..1870 916..1374 1816 84.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23939-PA 1765 GM23939-PA 302..1160 17..874 3466 98.5 Plus
Dsec\GM23939-PA 1765 GM23939-PA 1203..1765 843..1374 2359 92.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\pros-PA 623 GD18749-PA 196..623 906..1374 1637 87.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\pros-PA 1755 GJ23424-PA 317..1755 49..1374 4140 70.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11290-PA 1685 GK11290-PA 301..969 67..712 2038 74.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26090-PA 1410 GE26090-PA 1..1410 1..1374 7097 96 Plus