Clone LD37668 Report

Search the DGRC for LD37668

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:376
Well:68
Vector:pOT2
Associated Gene/TranscriptCG4953-RA
Protein status:LD37668.pep: gold
Preliminary Size:1737
Sequenced Size:1728

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4953 2001-01-01 Release 2 assignment
CG4953 2001-09-19 Blastp of sequenced clone
CG4953 2003-01-01 Sim4 clustering to Release 3
CG4953 2008-04-29 Release 5.5 accounting
CG4953 2008-08-15 Release 5.9 accounting
CG4953 2008-12-18 5.12 accounting

Clone Sequence Records

LD37668.complete Sequence

1728 bp (1728 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058665

> LD37668.complete
TTCGCATTAAGTAAATTAAATTGCTGATTTATTTTTGTTAAAGTTAAGCA
CTTCTTAGAGTATTTTACAACATGGAGATGGTTGAACCGGATGCGCACTT
GGTGGCACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTG
GACCTGTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGC
TCCCAGGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGC
CGGCCAGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCG
AAACATTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTG
GAATGCGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAA
CCTATCCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTG
GAACCATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACAC
ATTCTCGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATC
GCTGAGAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAA
CCAAGTTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATC
CAAAACGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGG
CTCCGAGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAAT
CCGTATTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTC
CTCTATTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCT
GCGGCAATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATC
TGGGCGAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTC
GAATGCAAAACGCTCCGCCTGGAAGTACTGGATGCGAAGAACACCATTAA
AATCGGCACGATATTCACGTTCAATTGTCGCGTGACGAACACATCCGAGC
ATCCAATGAAACTGAATGTGCGATTGGCTGCCAAGTTTTCGCCCGATAGT
CAATACACGGGCTGTGCTGATTTTATGCTGAATCTTCTACAAAGTGGCGA
ATCTGCCGAATTTCCATTGTCCGTCTGTCCATCTAAATTGGGCCTCGTGA
AAATAACACCCTTGGTATTGACGAATACGCTCCAAAATGAGCAGTTCACC
ATTGAAAACGTCGTCGATGTTTTTGTTGTTAATTCGGATTACGATAATGA
TACCACAACTCATCAGAATAAGTTAATTCGTTACGAGAGTGCTGCAAGCT
GTTTGACCCAAAAGCAAGTTCAACTGCAAGTTGTATAGAATTGAATAGAT
GCAAAAATGTATATTTTAAATTTATGTTAATGTGAAATGGGGTTTTAAGT
GACGGGATAGATATTATAATTTATGTTGTTACTCTATGTAAAACGCCATA
CTTTAATAAAAAAAAAGTCGGCGGTAAAATTTTTAATGAAAATTTGCTGA
AATGTCCTTTAGTGTGGTCTTGCGTGCATTATGGAATCCTTAATTTCAAT
TGCATATTTTATATACTTTCTTGTACAAAGATAGTTAGATCTCTCTTTTG
TTAGCACATAACGAAAAAACTAAATAAATAAAAAACATCCCCATGTTCTC
ACAACAAATTAAAAAAAAAAAAAAAAAA

LD37668.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1804 CG4953-RA 95..1804 1..1710 8550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10266838..10267604 944..1710 3790 99.6 Plus
chr2L 23010047 chr2L 10265767..10266156 113..502 1950 100 Plus
chr2L 23010047 chr2L 10266280..10266592 503..815 1565 100 Plus
chr2L 23010047 chr2L 10266653..10266783 814..944 655 100 Plus
chr2L 23010047 chr2L 10265595..10265708 1..114 570 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10267982..10268756 944..1718 3875 100 Plus
2L 23513712 2L 10266911..10267300 113..502 1950 100 Plus
2L 23513712 2L 10267424..10267736 503..815 1565 100 Plus
2L 23513712 2L 10267797..10267927 814..944 655 100 Plus
2L 23513712 2L 10266739..10266852 1..114 570 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10267982..10268756 944..1718 3875 100 Plus
2L 23513712 2L 10266911..10267300 113..502 1950 100 Plus
2L 23513712 2L 10267424..10267736 503..815 1565 100 Plus
2L 23513712 2L 10267797..10267927 814..944 655 100 Plus
2L 23513712 2L 10266739..10266852 1..114 570 100 Plus
Blast to na_te.dros performed 2019-03-16 16:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1044..1143 1444..1544 115 61.2 Plus

LD37668.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:39:50 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10265595..10265708 1..114 100 -> Plus
chr2L 10265769..10266156 115..502 100 -> Plus
chr2L 10266280..10266592 503..815 100 -> Plus
chr2L 10266655..10266783 816..944 100 -> Plus
chr2L 10266839..10267604 945..1710 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:19:59 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 1..1317 72..1388 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:22 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 1..1317 72..1388 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:34 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 1..1317 72..1388 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:46 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 1..1317 72..1388 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:37:16 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 1..1317 72..1388 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:47 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 38..1746 1..1709 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:22 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 35..1744 1..1710 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:34 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 37..1746 1..1710 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:47 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 38..1746 1..1709 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:37:16 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 37..1746 1..1710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:50 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10266739..10266852 1..114 100 -> Plus
2L 10266913..10267300 115..502 100 -> Plus
2L 10267424..10267736 503..815 100 -> Plus
2L 10267799..10267927 816..944 100 -> Plus
2L 10267983..10268748 945..1710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:50 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10266739..10266852 1..114 100 -> Plus
2L 10266913..10267300 115..502 100 -> Plus
2L 10267424..10267736 503..815 100 -> Plus
2L 10267799..10267927 816..944 100 -> Plus
2L 10267983..10268748 945..1710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:50 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10266739..10266852 1..114 100 -> Plus
2L 10266913..10267300 115..502 100 -> Plus
2L 10267424..10267736 503..815 100 -> Plus
2L 10267799..10267927 816..944 100 -> Plus
2L 10267983..10268748 945..1710 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:34 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10266739..10266852 1..114 100 -> Plus
arm_2L 10266913..10267300 115..502 100 -> Plus
arm_2L 10267424..10267736 503..815 100 -> Plus
arm_2L 10267799..10267927 816..944 100 -> Plus
arm_2L 10267983..10268748 945..1710 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:14 Download gff for LD37668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10266913..10267300 115..502 100 -> Plus
2L 10267424..10267736 503..815 100 -> Plus
2L 10267799..10267927 816..944 100 -> Plus
2L 10267983..10268748 945..1710 100   Plus
2L 10266739..10266852 1..114 100 -> Plus

LD37668.pep Sequence

Translation from 71 to 1387

> LD37668.pep
MEMVEPDAHLVALKVMRLMRPTLVGLGPVVTCEPTDLVQRFSSSQESDGM
SGACAETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKA
DLQSNTSRINLSMHENAKSPVVLPPGGTIDDVIRYEVKEIGTHILVCEVN
YSTPAGYAQSLRKFFKFQVLKPLDVKTKFYNAEIDEIYLEAQIQNVTTSP
FCLEKVELDGSEDYSVTPLNTLPNGESVFTVKHMLQPNNSCQFLYCIKPK
GDIAKNVDTLRQFNNVGKLDIVWRSNLGEKGRLQTSQLQRLPFECKTLRL
EVLDAKNTIKIGTIFTFNCRVTNTSEHPMKLNVRLAAKFSPDSQYTGCAD
FMLNLLQSGESAEFPLSVCPSKLGLVKITPLVLTNTLQNEQFTIENVVDV
FVVNSDYDNDTTTHQNKLIRYESAASCLTQKQVQLQVV*

LD37668.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15760-PA 438 GF15760-PA 1..438 1..438 2160 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10100-PA 438 GG10100-PA 1..438 1..438 2280 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13306-PA 438 GH13306-PA 1..438 1..438 1703 73.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-PA 438 CG4953-PA 1..438 1..438 2265 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18169-PA 438 GI18169-PA 1..438 1..438 1732 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19004-PA 438 GL19004-PA 1..438 1..438 1785 75.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18092-PA 438 GM18092-PA 1..438 1..438 2325 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23672-PA 417 GD23672-PA 1..395 1..395 2092 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14608-PA 438 GJ14608-PA 1..438 1..438 1717 72.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12482-PA 437 GK12482-PA 1..437 1..438 1561 70.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18914-PA 438 GE18914-PA 1..438 1..438 2273 97 Plus

LD37668.hyp Sequence

Translation from 71 to 1387

> LD37668.hyp
MEMVEPDAHLVALKVMRLMRPTLVGLGPVVTCEPTDLVQRFSSSQESDGM
SGACAETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKA
DLQSNTSRINLSMHENAKSPVVLPPGGTIDDVIRYEVKEIGTHILVCEVN
YSTPAGYAQSLRKFFKFQVLKPLDVKTKFYNAEIDEIYLEAQIQNVTTSP
FCLEKVELDGSEDYSVTPLNTLPNGESVFTVKHMLQPNNSCQFLYCIKPK
GDIAKNVDTLRQFNNVGKLDIVWRSNLGEKGRLQTSQLQRLPFECKTLRL
EVLDAKNTIKIGTIFTFNCRVTNTSEHPMKLNVRLAAKFSPDSQYTGCAD
FMLNLLQSGESAEFPLSVCPSKLGLVKITPLVLTNTLQNEQFTIENVVDV
FVVNSDYDNDTTTHQNKLIRYESAASCLTQKQVQLQVV*

LD37668.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-PA 438 CG4953-PA 1..438 1..438 2265 100 Plus