Clone LD37690 Report

Search the DGRC for LD37690

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:376
Well:90
Vector:pOT2
Associated Gene/TranscriptAtg14-RA
Protein status:LD37690.pep: gold
Preliminary Size:1844
Sequenced Size:1888

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11877 2001-01-01 Release 2 assignment
CG11877 2001-07-04 Blastp of sequenced clone
CG11877 2003-01-01 Sim4 clustering to Release 3
CG11877 2008-04-29 Release 5.5 accounting
CG11877 2008-08-15 Release 5.9 accounting
CG11877 2008-12-18 5.12 accounting

Clone Sequence Records

LD37690.complete Sequence

1888 bp (1888 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051888

> LD37690.complete
CTCATATCGATAGCGATAATAGCAAAGTTAACAATAACAAAAGATATAAC
ATAACAAATAATTGCAATGCTTTGGCTGTAATGGCAAACAGCTCCAGCTC
CGACGAAAGCTGCAAGGCCCCCGACAACTTTCGCATCTCGAGCGCCTCCA
CAAACGGCGAGGACGAGGAATCAGATGTCGCAGGATACACAACAAAGCGC
AGGCCAACGGCAGCGACGAAGGAACTGTTGAAGGATGCGAACGCCAAGGA
TAGGAACGCCACCACGGGAATGGGTGCCCACATGCGGTGCCCACTGTGCC
ACAGCTGCAGCGCCAGCCGATTCCACTGTCGCAATTGCGTCAGAAACGGA
AACATTACTCACAGCCAGGCGGAAAGGCCCGAAAGCCTGACGGAGAAGCA
GCAGCGCTACATCAACCTGCAGGCGGGCCTCAAAACCTTCAGCACGCGCT
ACGAACGCCTTATCGGGCAGCACCGCTCCAATGAAGATCGCCTGATGGCC
ATCAAGGCCAAGCGAAAGCAACTGGAGCTCCTACAGCAACTAATCTCCGG
CACGGGACAGAGACTGCGCGTCCTCGGCGAGCGACGCGATGAATTGCGTC
GCGCCAATGCCGAGAAGCGGAAGAACCTACCTAAATACCCGGACAAGGTC
AAGATGCTCGAAAACTACGTGTTGGATCGAGTGGAGAAAATAGAGAAACT
CAGGGAGACCCATCTGGGTCTTCTGGACAGCATAAAACAGGCGGCGCGTC
GCAGCATTCAGCAACTGGTCACCTATGTGTTTCCCATAGCTGAGGTGGTC
CTCAAGGAGGAGCAACAGAGGCGGGCTAGTGTGGAGCGCACCGAGGAGGC
GGAAACCATAGCGGCGCTGGCCGATGCCAAGAATACATCTTACATACGCG
GCAAATGGGTTTTTCATGGCAGTGGGATCAGTGAAGTTCAATACAGGATT
GTGGGCCCTTCGTTGCCAGCCAATGGCGACTATACCGCCTACCTGGACTG
GCTGGCGGACAACAAGGACGACGTTCCCAAGGCCACGGCCAACGAGATTA
CGCCGAGCAGGTTCGAAGCCTATCGCATTGTGGGCGCTCTTACCTACACG
GCGCAGCTGACGCAGTTGCTCAGCTTCTACCTGAACGTGCGGCTGCCACA
TAAGATCGCCTATGGCGACTTCTGTCGTAAGCTGCTCAACGAGGAACAGT
TCCGGCGCAAAATCTCGCGCCTCAACTCCAATATCATGTATCTGGCCTAC
ACACAGCAGGTGAAGTTGCGTGCCCTCATCGAACAGCATACGCTGGAAAA
CCTACTAGCCATCCTCGATCTGGAGCGCAGCGACTTGGGTCGATATGGCC
ATCTGGACGTGAACAATGCACCACTCATGAAGTCAGTGGACTCCCTACTA
ATCGGCATCGAGACCGCCACGGAATCGGAGTCAGAGGACGAAAACTCTCT
GCGCATGGACTGGGAGGCGGTGCCCAGCCTGACACCGCAGCCGGAGCTGG
CGGATCCCAATCTGATGCCGGCGGCCAACCAGCAGTCTACCATCGCCTTC
GTGCGAATGGCGGCCACATCGGTGCTGCGCTGGATCAAATGATCGCAGAC
CAACAGACGTCCGATCTTTCGGCTATATCATCATGAGACACGCGTGTTAT
CTTTTACAAATTAGACTAAGTAATCGTTTCTGTGACAGCACGTCGGTGTT
TATCGGCAGTTGCTGGTTTTAGCGTTATCCTTTGGTTTACAGAACTAATT
TTGTATCAATTATATATATACATATATATTCGCTGTGTGTAAAGAAAATG
CGCCTTTTGGATTTATTTCTATTACATAACTTATTCGCCTTTATTTAATA
AAAATGGTTCTCTATAAATAAAAAAAAAAAAAAAAAAA

LD37690.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11877-RA 1959 CG11877-RA 85..1956 1..1872 9360 100 Plus
yemalpha-RA 4424 yemalpha-RA 4357..4424 1872..1805 340 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24939740..24940793 384..1437 5255 99.9 Plus
chr3R 27901430 chr3R 24940855..24941287 1437..1869 2150 99.8 Plus
chr3R 27901430 chr3R 24939285..24939669 1..385 1925 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29116843..29117896 384..1437 5270 100 Plus
3R 32079331 3R 29117958..29118393 1437..1872 2180 100 Plus
3R 32079331 3R 29116388..29116772 1..385 1925 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28857674..28858727 384..1437 5270 100 Plus
3R 31820162 3R 28858789..28859224 1437..1872 2180 100 Plus
3R 31820162 3R 28857219..28857603 1..385 1925 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:25:17 has no hits.

LD37690.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:26:17 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24939285..24939669 1..385 100 -> Plus
chr3R 24939742..24940793 386..1437 99 -> Plus
chr3R 24940856..24941280 1438..1862 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:00 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11877-RA 1..1512 81..1592 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:17:43 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11877-RA 1..1512 81..1592 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:14 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
Atg14-RA 1..1512 81..1592 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:49:13 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11877-RA 1..1512 81..1592 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:33:49 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
Atg14-RA 1..1512 81..1592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:12:36 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11877-RA 1..1869 1..1869 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:17:43 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11877-RA 1..1866 4..1869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:14 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
Atg14-RA 1..1866 4..1869 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:49:14 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11877-RA 1..1869 1..1869 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:33:49 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
Atg14-RA 1..1866 4..1869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:17 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29116388..29116772 1..385 100 -> Plus
3R 29116845..29117896 386..1437 100 -> Plus
3R 29117959..29118390 1438..1869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:17 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29116388..29116772 1..385 100 -> Plus
3R 29116845..29117896 386..1437 100 -> Plus
3R 29117959..29118390 1438..1869 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:26:17 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29116388..29116772 1..385 100 -> Plus
3R 29116845..29117896 386..1437 100 -> Plus
3R 29117959..29118390 1438..1869 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:14 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24942110..24942494 1..385 100 -> Plus
arm_3R 24942567..24943618 386..1437 100 -> Plus
arm_3R 24943681..24944112 1438..1869 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:27:25 Download gff for LD37690.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28857219..28857603 1..385 100 -> Plus
3R 28857676..28858727 386..1437 100 -> Plus
3R 28858790..28859221 1438..1869 100   Plus

LD37690.hyp Sequence

Translation from 2 to 1591

> LD37690.hyp
HIDSDNSKVNNNKRYNITNNCNALAVMANSSSSDESCKAPDNFRISSAST
NGEDEESDVAGYTTKRRPTAATKELLKDANAKDRNATTGMGAHMRCPLCH
SCSASRFHCRNCVRNGNITHSQAERPESLTEKQQRYINLQAGLKTFSTRY
ERLIGQHRSNEDRLMAIKAKRKQLELLQQLISGTGQRLRVLGERRDELRR
ANAEKRKNLPKYPDKVKMLENYVLDRVEKIEKLRETHLGLLDSIKQAARR
SIQQLVTYVFPIAEVVLKEEQQRRASVERTEEAETIAALADAKNTSYIRG
KWVFHGSGISEVQYRIVGPSLPANGDYTAYLDWLADNKDDVPKATANEIT
PSRFEAYRIVGALTYTAQLTQLLSFYLNVRLPHKIAYGDFCRKLLNEEQF
RRKISRLNSNIMYLAYTQQVKLRALIEQHTLENLLAILDLERSDLGRYGH
LDVNNAPLMKSVDSLLIGIETATESESEDENSLRMDWEAVPSLTPQPELA
DPNLMPAANQQSTIAFVRMAATSVLRWIK*

LD37690.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Atg14-PA 503 CG11877-PA 1..503 27..529 2563 100 Plus

LD37690.pep Sequence

Translation from 80 to 1591

> LD37690.pep
MANSSSSDESCKAPDNFRISSASTNGEDEESDVAGYTTKRRPTAATKELL
KDANAKDRNATTGMGAHMRCPLCHSCSASRFHCRNCVRNGNITHSQAERP
ESLTEKQQRYINLQAGLKTFSTRYERLIGQHRSNEDRLMAIKAKRKQLEL
LQQLISGTGQRLRVLGERRDELRRANAEKRKNLPKYPDKVKMLENYVLDR
VEKIEKLRETHLGLLDSIKQAARRSIQQLVTYVFPIAEVVLKEEQQRRAS
VERTEEAETIAALADAKNTSYIRGKWVFHGSGISEVQYRIVGPSLPANGD
YTAYLDWLADNKDDVPKATANEITPSRFEAYRIVGALTYTAQLTQLLSFY
LNVRLPHKIAYGDFCRKLLNEEQFRRKISRLNSNIMYLAYTQQVKLRALI
EQHTLENLLAILDLERSDLGRYGHLDVNNAPLMKSVDSLLIGIETATESE
SEDENSLRMDWEAVPSLTPQPELADPNLMPAANQQSTIAFVRMAATSVLR
WIK*

LD37690.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23288-PA 506 GF23288-PA 13..506 11..503 2251 86 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11644-PA 503 GG11644-PA 1..503 1..503 2660 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19651-PA 509 GH19651-PA 1..509 1..503 1852 72.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Atg14-PA 503 CG11877-PA 1..503 1..503 2563 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22272-PA 498 GI22272-PA 1..498 1..503 1806 72 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23910-PA 496 GL23910-PA 1..496 1..503 2187 83.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11253-PA 496 GA11253-PA 1..496 1..503 2187 83.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12766-PA 483 GM12766-PA 1..483 1..503 2529 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21414-PA 503 GD21414-PA 1..503 1..503 2677 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24065-PA 496 GJ24065-PA 1..496 1..503 1824 74 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11889-PA 506 GK11889-PA 14..506 12..503 2032 78.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23834-PA 503 GE23834-PA 1..503 1..503 2667 98.2 Plus