Clone LD37839 Report

Search the DGRC for LD37839

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:378
Well:39
Vector:pOT2
Associated Gene/TranscriptCG6750-RA
Protein status:LD37839.pep: gold
Preliminary Size:816
Sequenced Size:1020

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6750 2002-01-01 Sim4 clustering to Release 2
CG6750 2002-05-18 Blastp of sequenced clone
CG6750 2003-01-01 Sim4 clustering to Release 3
CG6750 2008-04-29 Release 5.5 accounting
CG6750 2008-08-15 Release 5.9 accounting
CG6750 2008-12-18 5.12 accounting

Clone Sequence Records

LD37839.complete Sequence

1020 bp (1020 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118958

> LD37839.complete
CCAATTGAGCCAGTTGGGTGAAAATTGGGCCGAAAAACAGGAAAATCTCA
CAGATCAATTAAAATATGACGGAGCTGCTGATTGATCCGGACATCCGCGT
GTGGGTGTTCCTGCCCATCGTGCTGATCACGTTCCTGGTGGGCATTGTGC
GCCACTACGTCTCTATACTGATATCCACGCAGAAGAAGGCCGAGATCACC
CAAATCCAGGACAGCCAGGCAATGATCCGGGCACGCTTGCTACGCGAGAA
CGGCAAGTATCTCAGCGCCCAGAGCTTCTCCATGCGTAAGAACTACTTCA
ACAACGAGGAGACCGGCTACTTCAAGACTCAGAAACGGGCGCCTGTAGCC
CAAAACTCATCCGCCATGCTCACCGACATGGTCAAGGGAAACTTTATTAA
CGTGCTGCCCATGGTCGTGATCGGTGGCTGGATCAACTGGATGTTTTCGG
GCTTCGTCACCACCAAGGTACCCTTCCCGTTGACCCTGCGCTTTAAGCCC
ATGCTCCAGCGGGGCGTGGAGCTGGCCTCGCTGGACGCCGCCTGGGTCTC
CTCAGCCTCTTGGTACTTCCTCAACGTGTTCGGCCTGCGCTCCATCTACA
CACTGGTTCTTGGCGAGAACAATCATGCCGATCAGACGCAGGCACAGGCG
GATGCCATGACGGGCGCCGCCATGACTATGCCCCAGGATCCAAAGGCCGC
CTTCAAGGCCGAGTGGGAGGCGCTCGAGATAACCGAGTACCACAACGCAC
TCAAGAACATTGACGCTGACATGCTGGCTATCGCCAGTGCACCCGCGGCA
TCATCCTAATTAAGTTATGTATTTTAGCAAATTCACAATGTAACAAAGTA
GATTTTGTTTCGAGTCAGAGAGGGTTAAAATAAAGCAAGTTGTGTGACTA
CAATGGGAAACCAATCCGTTCTGCATGGAAATCCAAATGTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LD37839.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6750-RA 964 CG6750-RA 8..949 1..942 4710 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10730169..10730898 940..211 3650 100 Minus
chr2L 23010047 chr2L 10730955..10731168 214..1 1070 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10731398..10732129 942..211 3660 100 Minus
2L 23513712 2L 10732186..10732399 214..1 1070 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10731398..10732129 942..211 3660 100 Minus
2L 23513712 2L 10732186..10732399 214..1 1070 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:42:10 has no hits.

LD37839.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:43:34 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10730169..10730894 215..940 100 <- Minus
chr2L 10730955..10731168 1..214 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:07 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 1..744 66..809 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:21 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 1..744 66..809 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:00:23 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 1..744 66..809 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:33 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 1..744 66..809 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:07 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 1..744 66..809 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:19:19 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 8..919 1..912 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:21 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 8..947 1..940 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:23 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 25..964 1..940 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:34 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 8..919 1..912 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:07 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
CG6750-RA 25..964 1..940 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:34 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10731400..10732125 215..940 100 <- Minus
2L 10732186..10732399 1..214 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:34 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10731400..10732125 215..940 100 <- Minus
2L 10732186..10732399 1..214 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:34 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10731400..10732125 215..940 100 <- Minus
2L 10732186..10732399 1..214 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:23 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10731400..10732125 215..940 100 <- Minus
arm_2L 10732186..10732399 1..214 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:56 Download gff for LD37839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10731400..10732125 215..940 100 <- Minus
2L 10732186..10732399 1..214 100   Minus

LD37839.pep Sequence

Translation from 65 to 808

> LD37839.pep
MTELLIDPDIRVWVFLPIVLITFLVGIVRHYVSILISTQKKAEITQIQDS
QAMIRARLLRENGKYLSAQSFSMRKNYFNNEETGYFKTQKRAPVAQNSSA
MLTDMVKGNFINVLPMVVIGGWINWMFSGFVTTKVPFPLTLRFKPMLQRG
VELASLDAAWVSSASWYFLNVFGLRSIYTLVLGENNHADQTQAQADAMTG
AAMTMPQDPKAAFKAEWEALEITEYHNALKNIDADMLAIASAPAASS*

LD37839.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14072-PA 250 GF14072-PA 1..250 1..247 1281 96.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10364-PA 247 GG10364-PA 1..247 1..247 1309 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17887-PA 246 GH17887-PA 1..246 1..246 1272 96.3 Plus
Dgri\GH11311-PA 245 GH11311-PA 1..245 1..245 1209 92.2 Plus
Dgri\GH17886-PA 187 GH17886-PA 1..49 1..49 240 95.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
EMC3-PA 247 CG6750-PA 1..247 1..247 1259 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17819-PA 246 GI17819-PA 1..246 1..246 1262 95.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26390-PA 247 GL26390-PA 1..246 1..246 1273 97.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19832-PA 247 GA19832-PA 1..246 1..246 1273 97.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11489-PA 247 GM11489-PA 1..247 1..247 1314 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22233-PA 247 GD22233-PA 1..247 1..247 1314 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17648-PA 246 GJ17648-PA 1..246 1..246 1271 96.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15452-PA 245 GK15452-PA 1..244 1..244 1276 97.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13406-PA 247 GE13406-PA 1..247 1..247 1311 99.6 Plus

LD37839.hyp Sequence

Translation from 65 to 808

> LD37839.hyp
MTELLIDPDIRVWVFLPIVLITFLVGIVRHYVSILISTQKKAEITQIQDS
QAMIRARLLRENGKYLSAQSFSMRKNYFNNEETGYFKTQKRAPVAQNSSA
MLTDMVKGNFINVLPMVVIGGWINWMFSGFVTTKVPFPLTLRFKPMLQRG
VELASLDAAWVSSASWYFLNVFGLRSIYTLVLGENNHADQTQAQADAMTG
AAMTMPQDPKAAFKAEWEALEITEYHNALKNIDADMLAIASAPAASS*

LD37839.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6750-PA 247 CG6750-PA 1..247 1..247 1259 100 Plus