Clone LD37858 Report

Search the DGRC for LD37858

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:378
Well:58
Vector:pOT2
Associated Gene/TranscriptCG14906-RC
Protein status:LD37858.pep: gold
Preliminary Size:705
Sequenced Size:2315

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14907 2002-01-01 Sim4 clustering to Release 2
CG14906 2002-05-18 Blastp of sequenced clone
CG14906 2008-04-29 Release 5.5 accounting
CG14907 2008-08-15 Release 5.9 accounting
CG14906 2008-08-15 Release 5.9 accounting
CG14906 2008-12-18 5.12 accounting
CG14907 2008-12-18 5.12 accounting

Clone Sequence Records

LD37858.complete Sequence

2315 bp (2315 high quality bases) assembled on 2002-05-18

GenBank Submission: AY122180

> LD37858.complete
ATTGAATGATGTAAACATGTCTGCACATTACTGCGGCTACAACCCGCCGC
CGCCGAACTTCAAAACCTTTTTTCCCGAAAAATACAAGGACCGACTGCAG
CGACTTCCCAATTTTGGAAAATTGCGATCATCGTGGGAGATCCACAGGCG
ACCGACCCTCGTGGTTCTTCATGTGTTTGCGGATGATATCGGTGCGCTAG
ACAAATGGATAGATGTGGTATACCGACTAGCTGCCCCTGGGTTTCTTGGC
GGCGAGATGGACTTTTTCGTGGACGATCTGTGGCAGTCGTTCATCTTCAA
TGAGGATGACTTCAGCTTCTCTCGGAGTGACGAAGGATGTACAGTGGACT
CATTTCCCCTGATATACGCCGCAAATTCAACTGGAAAGGTATTCTTCTTT
GGGGATTTCACTGGGCCTAAACTGCCCGACCTGGAGAGTCTAAGGGATTT
CTGCGATCAGGTGATTAAGGGGATAGCCGAGGAGCCCACTGCTAGAGATC
CCAAGGTTGAGAATATAAGCCTTGATAGCTGGAACGAACTTATGTACGCC
AGTGATAATGATATAGCGATTTGCTTCTACAACTCCTTGCAAAATGGCGC
TGAAGTCAATAGTAGTCTTATGGCAAATCTGGATTGGCTGGCCGATAAAC
TGAAACAGGAGTCAGTGCTTCTGTACAAGATGGATATACATGGATCTAGA
ATCCCAAAAAGTTCCTCGTAGAGTCGCCACCCGACTTCTTCTTCCTCCAG
GCAAACCAAAAGCATAATCCCTTGCGGTGCAAATATCAGCTGAACATGTG
GACAATGCTGAGATTTGTAGCCGAAAATTCTAGCAAGGAGCTTAGCTACT
ATAACCGTCGTGGAAATCGAAAACTCCATGCTGATTTGTTAATCCATATA
AAGGATTATTTTAATTTGAGCAGGAATAAGACCCGTTATTAGTAGTGGGT
ATAACATTAAAACTTTGATATTTATCTTTATTTAACTGTGCATATAGACC
TTTGTTTTTAATGACCTTACATCTTAGAGAATTGTAAAATTATAACTCAG
TCGGTATTCAATTATTTTATATTTTTGTAATATCTCGCGCACTGGGAAAA
CTATCGATAGACTCAGGGATGATTTTCAGATAGACATTTCAATATCGGAA
ATGTTGAAATTGCAAAAGAAAACTGAAGATTCGAAATTCGCAGTGTTCTT
GGATCACAAGACACTTATAAACGAAGCATATGACGAATTTAAGCTCAAGT
CCGAACTGTTCCAGTTCCATGCCAAAAAGACGGACAAAGGCATTGAGGAA
GACAAGACCAGGAAGCGCAAAAGGAAAGCCGGCGTAGAAGATGCGTCGTC
CTTGGAGGATTTACACTTAGTGAATGAATATCTAGAGCTTCTGAGCAAGC
CCGTTGAACCGGAGGACAGTTCACCGATGAAGAGGCACTGGGAGGATGGC
TACAACGTGCCCCAGTTGCATGGAGCCAACGAAAGTGGACGGATGCAGCG
GTTTCTGAGAGTTGATGGATCCCGTGGCGTGTACTTGATTCCCAATCAAT
CCCGATTCTTCAACCACAATGTGGACAATCTGCCTGCACTACTGCACCAA
CTTCTGCCCGCCTACGATCTCATCGTGCTGGATCCTCCGTGGCGGAATAA
GTACATCCGCAGGCTGAAGCGGGCCAAGCCGGAGCTGGGATACTCGATGC
TGAGCAATGAGCAATTGTCGCACATACCGCTCTCGAAGCTTACGCACCCA
CGGTCACTGGTGGCCATCTGGTGCACCAATTCGACGCTGCATCAGTTGGC
CCTGGAGCAGCAGCTGCTGCCCAGTTGGAATCTCCGGTTGCTCCACAAGC
TCCGATGGTACAAACTTAGCACAGACCATGAACTAATTGCTCCCCCGCAG
TCGGATCTCACCCAGAAGCAGCCTTACGAGATGCTCTACGTGGCCTGTCG
CTCCGATGCTTCTGAAAACTATGGAAAAGATATCCAACAGACCGAGCTGA
TCTTCAGCGTGCCCAGCATTGTGCATTCCCACAAGCCACCACTGCTGTCT
TGGCTGAGGGAGCACCTCCTGTTGGATAAGGACCAGCTGGAACCAAACTG
CCTGGAGCTGTTTGCCCGATATCTGCATCCCCACTTCACTTCAATTGGCT
TAGAAGTGCTCAAACTGATGGACGAAAGGCTATATGAAGTCCGTAAAGTA
GAACATTGCAACCAGGAGGAGGTAAATTAGCTACGCCTAATTATTGTATT
TAATTTTTACAAGTACCTCATTAAATAAGGGATTTATAAGCAGCTAAAAA
AAAAAAAAAAAAAAA

LD37858.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14906-RB 2327 CG14906-RB 33..2327 1..2295 11475 100 Plus
CG14907-RB 2327 CG14907-RB 33..2327 1..2295 11475 100 Plus
CG14907-RA 1091 CG14907-RA 33..1091 1..1059 5295 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12474543..12476837 2295..1 11475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16649980..16652275 2296..1 11480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16390811..16393106 2296..1 11480 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:32:32 has no hits.

LD37858.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:33:48 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12474543..12476837 1..2295 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:10 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14906-RB 1..1080 1151..2230 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:44:06 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14906-RB 1..1080 1151..2230 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:11:13 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14906-RC 1..1080 1151..2230 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:36:17 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14906-RB 1..1080 1151..2230 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:06:59 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14906-RC 1..1080 1151..2230 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:18:59 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14907-RB 1..2295 1..2295 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:44:06 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14906-RB 33..2327 1..2295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:13 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14906-RC 1..1177 1119..2295 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:36:17 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14907-RB 1..2295 1..2295 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:06:59 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
CG14906-RC 1..1177 1119..2295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:48 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16649981..16652275 1..2295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:48 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16649981..16652275 1..2295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:48 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16649981..16652275 1..2295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:13 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12475703..12477997 1..2295 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:08:40 Download gff for LD37858.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16390812..16393106 1..2295 100   Minus

LD37858.hyp Sequence

Translation from 1150 to 2229

> LD37858.hyp
MLKLQKKTEDSKFAVFLDHKTLINEAYDEFKLKSELFQFHAKKTDKGIEE
DKTRKRKRKAGVEDASSLEDLHLVNEYLELLSKPVEPEDSSPMKRHWEDG
YNVPQLHGANESGRMQRFLRVDGSRGVYLIPNQSRFFNHNVDNLPALLHQ
LLPAYDLIVLDPPWRNKYIRRLKRAKPELGYSMLSNEQLSHIPLSKLTHP
RSLVAIWCTNSTLHQLALEQQLLPSWNLRLLHKLRWYKLSTDHELIAPPQ
SDLTQKQPYEMLYVACRSDASENYGKDIQQTELIFSVPSIVHSHKPPLLS
WLREHLLLDKDQLEPNCLELFARYLHPHFTSIGLEVLKLMDERLYEVRKV
EHCNQEEVN*

LD37858.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14906-PC 359 CG14906-PC 1..359 1..359 1899 100 Plus

LD37858.pep Sequence

Translation from 1150 to 2229

> LD37858.pep
MLKLQKKTEDSKFAVFLDHKTLINEAYDEFKLKSELFQFHAKKTDKGIEE
DKTRKRKRKAGVEDASSLEDLHLVNEYLELLSKPVEPEDSSPMKRHWEDG
YNVPQLHGANESGRMQRFLRVDGSRGVYLIPNQSRFFNHNVDNLPALLHQ
LLPAYDLIVLDPPWRNKYIRRLKRAKPELGYSMLSNEQLSHIPLSKLTHP
RSLVAIWCTNSTLHQLALEQQLLPSWNLRLLHKLRWYKLSTDHELIAPPQ
SDLTQKQPYEMLYVACRSDASENYGKDIQQTELIFSVPSIVHSHKPPLLS
WLREHLLLDKDQLEPNCLELFARYLHPHFTSIGLEVLKLMDERLYEVRKV
EHCNQEEVN*

LD37858.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17927-PA 462 GF17927-PA 131..460 9..345 1107 63.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16815-PA 359 GG16815-PA 1..359 1..359 1614 88.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19433-PA 356 GH19433-PA 1..350 1..346 1016 58.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14906-PC 359 CG14906-PC 1..359 1..359 1899 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22636-PA 348 GI22636-PA 1..342 1..346 971 57.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23007-PA 361 GL23007-PA 1..354 1..348 1162 65.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13344-PA 361 GA13344-PA 1..354 1..348 1164 65.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15414-PA 355 GM15414-PA 1..353 1..356 1693 90.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23883-PA 350 GJ23883-PA 1..348 1..346 1024 56.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13858-PA 342 GK13858-PA 6..323 31..349 960 58.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26134-PA 356 GE26134-PA 1..356 1..356 1637 87.9 Plus