Clone LD37921 Report

Search the DGRC for LD37921

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:379
Well:21
Vector:pOT2
Associated Gene/TranscriptHakai-RA
Protein status:LD37921.pep: gold
Preliminary Size:1889
Sequenced Size:1768

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10263 2001-01-01 Release 2 assignment
CG10263 2001-10-10 Blastp of sequenced clone
CG10263 2003-01-01 Sim4 clustering to Release 3
CG10263 2008-04-29 Release 5.5 accounting
CG10263 2008-08-15 Release 5.9 accounting
CG10263 2008-12-18 5.12 accounting

Clone Sequence Records

LD37921.complete Sequence

1768 bp (1768 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061441

> LD37921.complete
CACGTATGTGGGAACAGCTGACAACCCTGGCCAAACGCAAATGCGGAGCT
AAACAAAAACCGAAAAACTTAAAAACCGGCATAAAATCCCACGCAAGTAC
AAGTGAACAATGGACACCGAGGAAGTGAAGCGCGGCCGCGGACGAGGGCG
TGGCACCAGGGCTCGCGGGCGCGGACGTGGCCGAGGACGCGGTCGTGGCA
AGAAAATCGACGACAGCAGCATCGCCGACGCCGCAGCCCTGGCGGCCAGC
AGCTGTGCAGCCCTGGAGGACAGTCCGGGAAGACTGGACGCCTCCGAAGA
TTCGGTCATGCAGGAGCTCGACAAGGACGGCGAACTGGAAACGCCCGGCG
CTCTGGAGGAGCCCCTGCCGCACGGTGCGCTAGGAGCGGTCGCCGCCAGC
GGGAACATGACTCCAGCGACGCAACAGCCACAGGTCCTGCAGCAAGTGCC
ACCGCCCGTGATGAGCCAAACAATCGACATGGAGGCGGACATATCGCAAC
TGGAGGCGCCCACTTTCACCACGCTTTCGCGCGGACCGCCGGAGCCGATG
CTGCGCCTTAAGTGGAACCACAAGGTGAGCCTGATCGGCGAGAAGGTGCT
GAACCCGATGATCCACTGCTGCGATCAGTGCGACAAGCCGATCCTCGTCT
ACGGCCGCATGATACCCTGCAAGCATGTATTTTGCCTCAAGTGCGCCCGC
GCCGAGCCCATCAAGAGTTGTCCCCGCTGCACGGACAAGGTGTTGCGCGT
GGAGCAGAGTGGCCTGGGCACCGTGTTCATGTGCACGCACGGCGGCAGTC
GCTACGGCAGCTCCGGCTGCCGTAGAACATACCTTTCGCAACGCGACCTG
CAGGCGCACATCAATCACAGACATGTGGCGCCGCAGCCGCCACCGTTGCA
GCCACAGCCGCAGCTGTCAGCCATGGCGGAGCAGCCAAAAATGACGGATC
TGGGCGGCGTCGGTCTGGGCCTGGAGTTGCACAAGCAGCGCAAGGCGAGT
GGTAGCTATGGCTCCTAAACTAAGCTGTCCTGTCTATAAAAAAACAACCG
CTTGCCCCTTGCAGCTCTCCGAGTCGTCTGTCCCCATATCCGTTTCCGCC
TCCATTGCGTCCCGTCCCGTCCTGTCGCGGCTGCCACTGACCGGCGGTGT
CGGTAACATCGGTAGTATTGGTAGTATACCGCCACCAGGATCCGCCGCCG
CCGCCCAAAACGCCATCCACGGCGGCCACTCGACGCTCACGCTGGCCAAT
TTGACCAGGATCAACAATGCCAATGCGCAGGAATGTCACCAGGGCAAGGC
CTCGCTGCACCACACGCTCAAGAAGGGCACGCCCCACCAGTCCGAGTCGG
TGGCGGATGCCTCCTACTACAGCAGCGTGCTCGCCTCCTTTGGCAGTGCG
GCCGGGAATCCGGGTTCTGGGCCACCCGGCGGTGGGGCAACAGCAGCAGC
ACAGCCCGCCAATCCGAGTGGCAGCCATTCCGCTGTTGGCCCAGGTGCCC
TGATTGGAGGCTCCACCGACGCGCCAACTGGTGGCTCGAGTGGCAACTGG
CAGCAGTCGCAATACTACAGATAGGGGGACGAAAGCGAGGGGCTAGTAAC
CAGGGTAGACGCTTTAACGCAGGCACGCAGGCTTTTAATTAAGTGAACAA
GTGTATGTTAAGCTGAACTGAACACTATTAAAGATATTTTACGGGGTTAG
GCCAACCCGAACCAAAAAATAAATGCTACTCCGGTTTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

LD37921.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10263-RA 1899 CG10263-RA 38..1778 1..1741 8705 100 Plus
CG10263-RC 1787 CG10263-RC 519..1786 474..1741 6340 100 Plus
CG10263-RD 1653 CG10263-RD 19..976 1..958 4790 100 Plus
CG10263-RD 1653 CG10263-RD 977..1653 1065..1741 3385 100 Plus
CG10263-RC 1787 CG10263-RC 19..491 1..473 2365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19579147..19580411 1738..474 6325 100 Minus
chr2L 23010047 chr2L 19580542..19581014 473..1 2365 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19580609..19581876 1741..474 6340 100 Minus
2L 23513712 2L 19582007..19582479 473..1 2365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19580609..19581876 1741..474 6340 100 Minus
2L 23513712 2L 19582007..19582479 473..1 2365 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:32:54 has no hits.

LD37921.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:34:01 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19579147..19580411 474..1738 100 <- Minus
chr2L 19580542..19581014 1..473 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:14 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
CG10263-RA 1..909 110..1018 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:49 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
CG10263-RA 1..909 110..1018 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:11:20 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
Hakai-RA 1..909 110..1018 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:50 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
CG10263-RA 1..909 110..1018 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:07:09 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
Hakai-RA 1..909 110..1018 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:06 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
CG10263-RA 19..1756 1..1738 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:49 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
CG10263-RA 19..1756 1..1738 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:20 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
Hakai-RA 1..1733 6..1738 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:50 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
CG10263-RA 19..1756 1..1738 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:07:09 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
Hakai-RA 1..1733 6..1738 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:01 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19580612..19581876 474..1738 100 <- Minus
2L 19582007..19582479 1..473 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:01 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19580612..19581876 474..1738 100 <- Minus
2L 19582007..19582479 1..473 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:01 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19580612..19581876 474..1738 100 <- Minus
2L 19582007..19582479 1..473 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:20 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19580612..19581876 474..1738 100 <- Minus
arm_2L 19582007..19582479 1..473 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:57 Download gff for LD37921.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19580612..19581876 474..1738 100 <- Minus
2L 19582007..19582479 1..473 100   Minus

LD37921.pep Sequence

Translation from 109 to 1017

> LD37921.pep
MDTEEVKRGRGRGRGTRARGRGRGRGRGRGKKIDDSSIADAAALAASSCA
ALEDSPGRLDASEDSVMQELDKDGELETPGALEEPLPHGALGAVAASGNM
TPATQQPQVLQQVPPPVMSQTIDMEADISQLEAPTFTTLSRGPPEPMLRL
KWNHKVSLIGEKVLNPMIHCCDQCDKPILVYGRMIPCKHVFCLKCARAEP
IKSCPRCTDKVLRVEQSGLGTVFMCTHGGSRYGSSGCRRTYLSQRDLQAH
INHRHVAPQPPPLQPQPQLSAMAEQPKMTDLGGVGLGLELHKQRKASGSY
GS*

LD37921.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15481-PA 411 GF15481-PA 1..252 1..256 878 80.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21618-PA 447 GG21618-PA 1..284 1..284 1055 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13496-PA 475 GH13496-PA 1..310 1..300 865 66.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hakai-PA 302 CG10263-PA 1..302 1..302 1600 100 Plus
Hakai-PC 311 CG10263-PC 1..311 1..302 1579 96.8 Plus
Hakai-PE 464 CG10263-PE 1..299 1..299 1570 99.3 Plus
Hakai-PF 473 CG10263-PF 1..308 1..299 1549 96.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17246-PA 292 GI17246-PA 1..292 1..302 910 69.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25640-PA 294 GL25640-PA 1..294 1..302 965 71.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10202-PA 293 GA10202-PA 1..293 1..302 955 71.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16996-PA 447 GM16996-PA 1..282 1..284 1085 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21743-PA 447 GD21743-PA 1..282 1..284 1446 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18006-PA 296 GJ18006-PA 1..296 1..302 897 67.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15225-PA 408 GK15225-PA 1..263 1..257 837 75.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12638-PA 445 GE12638-PA 1..282 1..284 1060 91.5 Plus

LD37921.hyp Sequence

Translation from 109 to 1017

> LD37921.hyp
MDTEEVKRGRGRGRGTRARGRGRGRGRGRGKKIDDSSIADAAALAASSCA
ALEDSPGRLDASEDSVMQELDKDGELETPGALEEPLPHGALGAVAASGNM
TPATQQPQVLQQVPPPVMSQTIDMEADISQLEAPTFTTLSRGPPEPMLRL
KWNHKVSLIGEKVLNPMIHCCDQCDKPILVYGRMIPCKHVFCLKCARAEP
IKSCPRCTDKVLRVEQSGLGTVFMCTHGGSRYGSSGCRRTYLSQRDLQAH
INHRHVAPQPPPLQPQPQLSAMAEQPKMTDLGGVGLGLELHKQRKASGSY
GS*

LD37921.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Hakai-PA 302 CG10263-PA 1..302 1..302 1600 100 Plus
Hakai-PC 311 CG10263-PC 1..311 1..302 1579 96.8 Plus
Hakai-PE 464 CG10263-PE 1..299 1..299 1570 99.3 Plus
Hakai-PF 473 CG10263-PF 1..308 1..299 1549 96.1 Plus