Clone LD37974 Report

Search the DGRC for LD37974

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:379
Well:74
Vector:pOT2
Associated Gene/TranscriptPIG-U-RA
Protein status:LD37974.pep: gold
Preliminary Size:1528
Sequenced Size:1477

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13089 2001-01-01 Release 2 assignment
CG13089 2001-09-19 Blastp of sequenced clone
CG13089 2003-01-01 Sim4 clustering to Release 3
CG13089 2008-04-29 Release 5.5 accounting
CG13089 2008-08-15 Release 5.9 accounting
CG13089 2008-12-18 5.12 accounting

Clone Sequence Records

LD37974.complete Sequence

1477 bp (1477 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058668

> LD37974.complete
GCGGAGTCCGTTCACAAAAACTATGCCCAACTAGAAGATGGATTCGAAGT
TCTTTAAACTGCTCCTGCTGGGCGGCGCCGTGCGCTTCTACTTCTGTCGC
ACGCCGCTGGCTCCGATGATTGGCAACCGAGTGGAGTTCGCGACACCTTT
AAATTCACACAAGCGCATGCAAGAGGGGATATTTCTTCTACAGAGTGGCA
TTGATCCCTATCTGGGCGACCTGGTACACGAATCGCCGCTGATACTCAGC
GCGCTCTCCGGATTGTTTCAAAAATACCCGCAGTTTCTGCCGATATTCTA
CATAATCCTGGATATCTGCACGGCGGCCCTGCTTTATGCGATGAGTCTGA
GATTCGTCAAGCAAAAGCAGGATCAGCAGGACAAGGAGCGAAAGGAGTAT
GCCAAGGATACGGAAGAGCTGCAGTTTGGCCCGCTGGACAAGCTTGACAT
TCCGGAACTTGTGATCGTGGCATATCTTTTCAGTCCACTGACTGTTATGA
GCTGCATTGGAATGACCTCCACCGTGATAAGCAATCTGTTCCTGGCTTTC
TTTTTCTACTGCCTCGTGAAGGGAATGCTCATTCCATGCCTTCTAGTCCT
CGCGTTCGAAACTGTCCGCAGCTTCTATCCCATTGTACTTATAGCACCAC
TGCTCCTGGTCTTTTCACGGAATTCGGTCAGGAGGGGTGTGGCTATAGCG
GCGCTCTTTATCGTCAGTTGTCTAATCGTGGCAGTTGCGAACTATTTTGT
GCTGAACAGCTGGAACTTCCTGGATGGAACGTTGGGTTTTATATTTTATT
TCCGCGATCTACAGCCAAATATCGGTCTCTTCTGGTACTTTTTTACTGAA
ATGTTTGAGCACTTCCGCACCATGTTCCTAATCACATTCCAATTGAATGC
CACCGTATTATACCTGGTGCCACTAAGTATTAAGCTGCGCAAGGAGCCCC
TACTGCTAGCCACGGTATTGGTGGCCCTTATGGCCGTTTTTAGGGCGTAT
CCCAGCCTGGGCGATGTCGGCTTTTATCTGGCCTTGCTTCCGCTGTGGAA
AAGATGTTGGAAATTCATGGCCCATGGCTTTGTGGTCTTTACGTTCTTCC
TGGTCACTCTATCTATGATGGGAGCCCTTTGGCATTTGTGGATCTATGCA
GGATCGGCAAATGCCAATTTCTATTTCGGTGCCACTCTTGCGTTTTCCAC
TGGGCAGATATTTCTAATCACCGATCTGCTGTTCGCGCACGTTAAACGTG
AGTTCTGCTTGTTCAATGGTCAGAAGATTCTGATCGATGGCGAGGAAGCG
AGGATAGTCTTAAAGTAAGCATTAACAGTATCAGTATGACGGACAGAATC
CAGGAACTTTGTACAGATGCAGAATGCGCTTCCTAATGGCAGCCGAGCAT
ACTCTTAAGATAAGTTAACTCCGAACAATATCAGATTAAACAAAATATTT
TATTTGATAAAAAAAAAAAAAAAAAAA

LD37974.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13089-RA 1512 CG13089-RA 41..1498 1..1458 7290 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8514255..8514879 168..792 3125 100 Plus
chr2L 23010047 chr2L 8515274..8515667 1065..1458 1970 100 Plus
chr2L 23010047 chr2L 8514942..8515213 793..1064 1360 100 Plus
chr2L 23010047 chr2L 8514028..8514194 1..167 835 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8515343..8515967 168..792 3125 100 Plus
2L 23513712 2L 8516362..8516755 1065..1458 1970 100 Plus
2L 23513712 2L 8516030..8516301 793..1064 1360 100 Plus
2L 23513712 2L 8515116..8515282 1..167 835 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8515343..8515967 168..792 3125 100 Plus
2L 23513712 2L 8516362..8516755 1065..1458 1970 100 Plus
2L 23513712 2L 8516030..8516301 793..1064 1360 100 Plus
2L 23513712 2L 8515116..8515282 1..167 835 100 Plus
Blast to na_te.dros performed 2019-03-16 16:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 3472..3534 299..235 122 67.7 Minus

LD37974.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:39:53 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8515274..8515667 1065..1458 100   Plus
chr2L 8514028..8514194 1..167 100 -> Plus
chr2L 8514255..8514879 168..792 100 -> Plus
chr2L 8514942..8515213 793..1064 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:17 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 1..1281 38..1318 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:11 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 1..1281 38..1318 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:43 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 1..1281 38..1318 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:35 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 1..1281 38..1318 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:37:22 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 1..1281 38..1318 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:31 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 19..1476 1..1458 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:10 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 19..1476 1..1458 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:43 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 21..1478 1..1458 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:35 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 19..1476 1..1458 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:37:22 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 21..1478 1..1458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:53 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8515116..8515282 1..167 100 -> Plus
2L 8515343..8515967 168..792 100 -> Plus
2L 8516030..8516301 793..1064 100 -> Plus
2L 8516362..8516755 1065..1458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:53 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8515116..8515282 1..167 100 -> Plus
2L 8515343..8515967 168..792 100 -> Plus
2L 8516030..8516301 793..1064 100 -> Plus
2L 8516362..8516755 1065..1458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:39:53 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8515116..8515282 1..167 100 -> Plus
2L 8515343..8515967 168..792 100 -> Plus
2L 8516030..8516301 793..1064 100 -> Plus
2L 8516362..8516755 1065..1458 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:43 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8516030..8516301 793..1064 100 -> Plus
arm_2L 8515116..8515282 1..167 100 -> Plus
arm_2L 8515343..8515967 168..792 100 -> Plus
arm_2L 8516362..8516755 1065..1458 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:01 Download gff for LD37974.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8515343..8515967 168..792 100 -> Plus
2L 8516030..8516301 793..1064 100 -> Plus
2L 8516362..8516755 1065..1458 100   Plus
2L 8515116..8515282 1..167 100 -> Plus

LD37974.hyp Sequence

Translation from 37 to 1317

> LD37974.hyp
MDSKFFKLLLLGGAVRFYFCRTPLAPMIGNRVEFATPLNSHKRMQEGIFL
LQSGIDPYLGDLVHESPLILSALSGLFQKYPQFLPIFYIILDICTAALLY
AMSLRFVKQKQDQQDKERKEYAKDTEELQFGPLDKLDIPELVIVAYLFSP
LTVMSCIGMTSTVISNLFLAFFFYCLVKGMLIPCLLVLAFETVRSFYPIV
LIAPLLLVFSRNSVRRGVAIAALFIVSCLIVAVANYFVLNSWNFLDGTLG
FIFYFRDLQPNIGLFWYFFTEMFEHFRTMFLITFQLNATVLYLVPLSIKL
RKEPLLLATVLVALMAVFRAYPSLGDVGFYLALLPLWKRCWKFMAHGFVV
FTFFLVTLSMMGALWHLWIYAGSANANFYFGATLAFSTGQIFLITDLLFA
HVKREFCLFNGQKILIDGEEARIVLK*

LD37974.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-PA 426 CG13089-PA 1..426 1..426 2200 100 Plus

LD37974.pep Sequence

Translation from 37 to 1317

> LD37974.pep
MDSKFFKLLLLGGAVRFYFCRTPLAPMIGNRVEFATPLNSHKRMQEGIFL
LQSGIDPYLGDLVHESPLILSALSGLFQKYPQFLPIFYIILDICTAALLY
AMSLRFVKQKQDQQDKERKEYAKDTEELQFGPLDKLDIPELVIVAYLFSP
LTVMSCIGMTSTVISNLFLAFFFYCLVKGMLIPCLLVLAFETVRSFYPIV
LIAPLLLVFSRNSVRRGVAIAALFIVSCLIVAVANYFVLNSWNFLDGTLG
FIFYFRDLQPNIGLFWYFFTEMFEHFRTMFLITFQLNATVLYLVPLSIKL
RKEPLLLATVLVALMAVFRAYPSLGDVGFYLALLPLWKRCWKFMAHGFVV
FTFFLVTLSMMGALWHLWIYAGSANANFYFGATLAFSTGQIFLITDLLFA
HVKREFCLFNGQKILIDGEEARIVLK*

LD37974.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15532-PA 426 GF15532-PA 1..426 1..426 1838 84.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25290-PA 426 GG25290-PA 1..426 1..426 2065 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10958-PA 426 GH10958-PA 1..426 1..426 1745 78.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-PA 426 CG13089-PA 1..426 1..426 2200 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10442-PA 426 GI10442-PA 1..426 1..426 1685 76.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26132-PA 426 GL26132-PA 1..426 1..426 1757 80.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12039-PA 426 GA12039-PA 1..426 1..426 1766 80.8 Plus
Dpse\GA25302-PA 426 GA25302-PA 1..426 1..426 1757 80.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17022-PA 393 GM17022-PA 1..393 1..426 1949 89.4 Plus
Dsec\GM17396-PA 151 GM17396-PA 1..151 102..252 752 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23551-PA 426 GD23551-PA 1..426 1..426 2194 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21659-PA 426 GJ21659-PA 1..426 1..426 1758 77 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24175-PA 426 GK24175-PA 1..426 1..426 1633 77.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18782-PA 426 GE18782-PA 1..426 1..426 2165 96.2 Plus