Clone LD38070 Report

Search the DGRC for LD38070

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:380
Well:70
Vector:pOT2
Associated Gene/TranscriptCG7288-RA
Protein status:LD38070.pep: gold
Preliminary Size:1754
Sequenced Size:1700

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7288 2001-01-01 Release 2 assignment
CG7288 2001-10-10 Blastp of sequenced clone
CG7288 2003-01-01 Sim4 clustering to Release 3
CG7288 2008-04-29 Release 5.5 accounting
CG7288 2008-08-15 Release 5.9 accounting
CG7288 2008-12-18 5.12 accounting

Clone Sequence Records

LD38070.complete Sequence

1700 bp (1700 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061442

> LD38070.complete
CTGCGGCCAGTCGGACAAACAGTCAACAAAAGTCTTAATTTTAGTTTTAT
ATGAATTACTGACTGAATCAGCTGGAAAAATGGCGCAAACGCAAGCTCCA
GCCGCCAAGCGCATGAAGCTGGAGAAGACGCCGGCAAATCCCGTCGAAGA
GGATGAGACGCCCTCCGTGTTCAATCCGAAGTACAGGGTGTGTCCCTACT
TGGACACCATCAACCGTAACCTGCTGGATTTCGATTTCGAGAAGCTTTGC
TCCATTTCGCTGACGAGGATCAATGTTTATGCCTGCCTGGTGTGCGGCAA
GTACTTCCAGGGACGTGGCACCAACACCCACGCCTACACACATTCCGTGG
GCGAGGCTCATCACGTGTTCCTCAATCTGCACACGCTGCGATTCTACTGC
CTGCCGGATAATTACGAGATCATCGACTCCTCGTTGGACGATATCAAATA
CGTGCTAAATCCAACGTTCACACGCCAGGAGATCAGCAAGTTGGATCAGT
TACAGCCGAAGCATTCGCGAACCGTGGACGGTGTTCTGTACTTACCCGGC
GTCGTGGGTTTGAACAACATCAAAGCGAACGACTACTGCAATGTGGTGCT
GCATGCACTCTCCCACGTCGGTCCACTTAGGGACTACTTCCTGCAAAAGC
AAAGCTATGCGCATGTCGTGCGGCCACCTGGAGATTCCGTGTTCACGCTG
GTGCAACGTTTCGGCGAGCTAATGCGCAAGATGTGGAATCCGCGGAACTT
TAAGTCGCACGTTTCGCCACACGAGATGCTGCAAGCTGTGGTGCTTTGGT
CCAGCAAGCGTTTCCAGATCACCGAGCAAGGCGATCCCATTGACTTTCTG
TCCTGGTTCCTCAATACACTGCACCGCGCCCTCAAGGGCAACAAACATCC
GAATTCTTCTATACTCTACAAGATATTTCTGGGCGAGATGAAGATCTACA
CGCGCAAGATGCCGCCCGTCGAGTTGGACGACGCTGCCAAGGCGCAACTG
CTGGCCACCGAGGAGTACAAGGACCAGGTGGAGGACAAAAATTTCATCTA
CCTCACATGCGATCTACCTCCGCCGCCGCTGTTCACCGACGAGTTTCGCG
AGAACATCATACCGCAGGTGAACTTATATCAGCTGCTGAGCAAGTTCAAT
GGCACTGCCGAAAAGGAGTACAAGACCTACAAGGCTAACTTTATGAAGCG
CTTCGAGATCACCCGCCTGCCGCAGTTCATCATTCTGTACATCAAGCGAT
TTACCAAGAACACATTCTTCCTGGAAAAGAATCCCACCATTGTGAACTTT
CCCATCAAGCACGTGGACTTTGGCGACATTCTGGGCATGCGGCAGCGCGA
CAAGGATGTCAAGGATACGAAATACAATCTGGTGGCCAATATTGTGCACG
ACGGCGATCCCAAGAAGGGCACCTATCGTGCCCACATCCTGCACAAGGCC
AACGGTCAGTGGTACGAGATGCAGGATCTGCATGTCACCGAGATACTGCC
GCAGATGATCACGCTCACCGAGTCCTACATCCAAATCTACGAGCGCTGTC
CAAACTCCTCGTGATCCACCTGACTTTTAATAACTCCTAACTATATTTCG
GTTAACAAACTCCATGATAAAAAATAAAATATGCTGTAGTCGAGTGTAGC
GACTATGAGTGGCCCTTGAATAGGAGAAATGTAAAAAAAAAAAAAAAAAA

LD38070.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7288-RA 1726 CG7288-RA 23..1705 1..1683 8415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18747632..18748786 155..1309 5775 100 Plus
chrX 22417052 chrX 18748839..18749216 1305..1682 1735 98.4 Plus
chrX 22417052 chrX 18747360..18747460 1..101 490 99 Plus
chrX 22417052 chrX 18747521..18747576 100..155 280 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18858488..18859642 155..1309 5775 100 Plus
X 23542271 X 18859695..18860073 1305..1683 1880 99.7 Plus
X 23542271 X 18858216..18858316 1..101 505 100 Plus
X 23542271 X 18858377..18858432 100..155 280 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18866586..18867740 155..1309 5775 100 Plus
X 23527363 X 18867793..18868171 1305..1683 1880 99.7 Plus
X 23527363 X 18866314..18866414 1..101 505 100 Plus
X 23527363 X 18866475..18866530 100..155 280 100 Plus
Blast to na_te.dros performed on 2019-03-16 10:58:31 has no hits.

LD38070.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:59:18 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18747360..18747460 1..101 99 -> Plus
chrX 18747523..18747576 102..155 100 -> Plus
chrX 18747633..18748785 156..1308 100 -> Plus
chrX 18748843..18749216 1309..1682 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:23 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 1..1485 80..1564 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:53:50 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 1..1485 80..1564 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:40:21 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 1..1485 80..1564 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:22:51 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 1..1485 80..1564 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:24 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 1..1485 80..1564 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:39:08 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 1..1682 1..1682 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:53:50 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 1..1682 1..1682 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:40:21 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 14..1695 1..1682 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:22:51 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 1..1682 1..1682 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:24 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
CG7288-RA 14..1695 1..1682 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:18 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
X 18858216..18858316 1..101 100 -> Plus
X 18858379..18858432 102..155 100 -> Plus
X 18858489..18859641 156..1308 100 -> Plus
X 18859699..18860072 1309..1682 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:18 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
X 18858216..18858316 1..101 100 -> Plus
X 18858379..18858432 102..155 100 -> Plus
X 18858489..18859641 156..1308 100 -> Plus
X 18859699..18860072 1309..1682 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:18 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
X 18858216..18858316 1..101 100 -> Plus
X 18858379..18858432 102..155 100 -> Plus
X 18858489..18859641 156..1308 100 -> Plus
X 18859699..18860072 1309..1682 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:40:21 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18752249..18752349 1..101 100 -> Plus
arm_X 18752412..18752465 102..155 100 -> Plus
arm_X 18752522..18753674 156..1308 100 -> Plus
arm_X 18753732..18754105 1309..1682 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:59:59 Download gff for LD38070.complete
Subject Subject Range Query Range Percent Splice Strand
X 18866587..18867739 156..1308 100 -> Plus
X 18867797..18868170 1309..1682 100   Plus
X 18866314..18866414 1..101 100 -> Plus
X 18866477..18866530 102..155 100 -> Plus

LD38070.hyp Sequence

Translation from 0 to 1563

> LD38070.hyp
CGQSDKQSTKVLILVLYELLTESAGKMAQTQAPAAKRMKLEKTPANPVEE
DETPSVFNPKYRVCPYLDTINRNLLDFDFEKLCSISLTRINVYACLVCGK
YFQGRGTNTHAYTHSVGEAHHVFLNLHTLRFYCLPDNYEIIDSSLDDIKY
VLNPTFTRQEISKLDQLQPKHSRTVDGVLYLPGVVGLNNIKANDYCNVVL
HALSHVGPLRDYFLQKQSYAHVVRPPGDSVFTLVQRFGELMRKMWNPRNF
KSHVSPHEMLQAVVLWSSKRFQITEQGDPIDFLSWFLNTLHRALKGNKHP
NSSILYKIFLGEMKIYTRKMPPVELDDAAKAQLLATEEYKDQVEDKNFIY
LTCDLPPPPLFTDEFRENIIPQVNLYQLLSKFNGTAEKEYKTYKANFMKR
FEITRLPQFIILYIKRFTKNTFFLEKNPTIVNFPIKHVDFGDILGMRQRD
KDVKDTKYNLVANIVHDGDPKKGTYRAHILHKANGQWYEMQDLHVTEILP
QMITLTESYIQIYERCPNSS*

LD38070.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7288-PA 494 CG7288-PA 1..494 27..520 2641 100 Plus
Ubpy-PB 367 CG5798-PB 32..361 183..517 180 22 Plus
Ubpy-PA 896 CG5798-PA 561..890 183..517 180 22 Plus

LD38070.pep Sequence

Translation from 79 to 1563

> LD38070.pep
MAQTQAPAAKRMKLEKTPANPVEEDETPSVFNPKYRVCPYLDTINRNLLD
FDFEKLCSISLTRINVYACLVCGKYFQGRGTNTHAYTHSVGEAHHVFLNL
HTLRFYCLPDNYEIIDSSLDDIKYVLNPTFTRQEISKLDQLQPKHSRTVD
GVLYLPGVVGLNNIKANDYCNVVLHALSHVGPLRDYFLQKQSYAHVVRPP
GDSVFTLVQRFGELMRKMWNPRNFKSHVSPHEMLQAVVLWSSKRFQITEQ
GDPIDFLSWFLNTLHRALKGNKHPNSSILYKIFLGEMKIYTRKMPPVELD
DAAKAQLLATEEYKDQVEDKNFIYLTCDLPPPPLFTDEFRENIIPQVNLY
QLLSKFNGTAEKEYKTYKANFMKRFEITRLPQFIILYIKRFTKNTFFLEK
NPTIVNFPIKHVDFGDILGMRQRDKDVKDTKYNLVANIVHDGDPKKGTYR
AHILHKANGQWYEMQDLHVTEILPQMITLTESYIQIYERCPNSS*

LD38070.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19056-PA 494 GF19056-PA 1..494 1..494 2512 93.1 Plus
Dana\GF13485-PA 981 GF13485-PA 383..532 345..489 155 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19194-PA 494 GG19194-PA 1..494 1..494 2580 96.6 Plus
Dere\GG24410-PA 895 GG24410-PA 560..889 157..491 169 22 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17820-PA 491 GH17820-PA 6..489 8..491 2421 91.9 Plus
Dgri\GH19806-PA 920 GH19806-PA 337..486 345..489 161 28.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
Usp39-PA 494 CG7288-PA 1..494 1..494 2641 100 Plus
Usp8-PB 367 CG5798-PB 32..361 157..491 180 22 Plus
Usp8-PA 896 CG5798-PA 561..890 157..491 180 22 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21733-PA 492 GI21733-PA 1..492 1..493 2453 92.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21350-PA 300 GL21350-PA 1..300 196..494 1400 88 Plus
Dper\GL21349-PA 170 GL21349-PA 1..151 1..151 729 88.7 Plus
Dper\GL12603-PA 901 GL12603-PA 561..890 157..491 180 22.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23380-PA 494 GA23380-PA 1..494 1..494 2456 91.5 Plus
Dpse\GA19137-PA 901 GA19137-PA 561..890 157..491 179 22.7 Plus
Dpse\GA19137-PB 328 GA19137-PB 2..317 171..491 161 22.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22925-PA 494 GM22925-PA 1..494 1..494 2633 98.4 Plus
Dsec\GM15069-PA 896 GM15069-PA 561..890 157..491 170 22 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24862-PA 484 GD24862-PA 1..484 1..494 2564 96.6 Plus
Dsim\GD19401-PA 896 GD19401-PA 561..890 157..491 170 22 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19115-PA 493 GJ19115-PA 1..489 1..489 2419 91.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20149-PA 489 GK20149-PA 22..485 26..489 2362 92.7 Plus
Dwil\GK20778-PA 917 GK20778-PA 361..510 345..489 163 27.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17756-PA 494 GE17756-PA 1..494 1..494 2591 97 Plus
Dyak\GE25711-PA 895 GE25711-PA 560..889 157..491 166 22 Plus