Clone LD38082 Report

Search the DGRC for LD38082

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:380
Well:82
Vector:pOT2
Associated Gene/TranscriptCG6023-RA
Protein status:LD38082.pep: gold
Preliminary Size:1529
Sequenced Size:1415

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6023 2001-01-01 Release 2 assignment
CG6023 2001-09-19 Blastp of sequenced clone
CG6023 2003-01-01 Sim4 clustering to Release 3
CG6023 2008-04-29 Release 5.5 accounting
CG6023 2008-08-15 Release 5.9 accounting
CG6023 2008-12-18 5.12 accounting

Clone Sequence Records

LD38082.complete Sequence

1415 bp (1415 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060417

> LD38082.complete
CCGGTTCTGTTGCGTCCGTTTATTCTCTGTTTCTTTTTTTTTAAATTAAC
CCCTTACCTGTGCGTTGCGTAGCTCAAAAGTGTATAGATATCCAAGGCAA
GTTCGGGGATTTTTCGTGAATTTCTTGCGGCCCGTAATTAACGTGGGTTT
ACCTGGCCGCCCGCGGCAAAAGCATTAATAGCGTGACGCCCGTCATCACA
GCTGTCCGCCGTCAAAAAGTTAATCACCGCACTGAAATAAAACACGTCGC
GTGACAAAACTGAGCTACCTCCAAGTGCTGGCTCCTGGGCATCCTGCTGC
TACTCACAGTCGCCACTAGTTGGCCAACGGGGACAATTGCCGCACCGCGT
CGCGCTCGAGGATTGAGCCTGATTCTGCCGCACCGCAATCACGCACGACT
ACACCATCACCACCAGCACACCAGGTCAATAAGCACCAAGATCGTGCCCC
TGTTAACCAATCAGACTGAAGGCAGGGAGCAGTGCACGGACCTTAAAATG
ACTCCCAATATCGAACACCTGCAAGTGGCGCTCGAGGTGGCCAAGAATAC
GCGGGAGGCGGTCCTCTGTCTGACCAAAGAATGGCTGAGGAATCAAAACC
ACACCCTGCCCCAAGATCTTCACTCCTACTCTCTGCATTCCCTGGCATTG
AAGCATCCGCTCCAGTCGGAGGTCAAGGAAGTTAAGTTCCAGAACCAGCT
GGGTGACTTTGTGTACAGTGGCAAGGTGACAACGCTGCAGGAGGAGATGC
CGGCCATTATCGAGTCCCTGCTGGTCCTGGAGCATCTATACGAGATCATT
GTGTTCGATCACCAGTCCTGGAACTGCTACTTCAATAACTTCGTGCATTT
CTTCCATCACAACATGCACGAGGCTCTCAAGGTCGCCGGTCTCAACGATG
CCTGCAATCCGAGGAACGCCGAGTACAATGCCGATCACATATGGCCGATG
TTTGGCGCCGCCGTGGAGACCATCAAGGTGCTGACCATCATCGAGCACAA
GTACGAGCAGCTGATCAAGCTGTATCAGTAATCCGCTGGACAGAGTTGGA
CGCTCCAGAGGAGCAGTAAAAGCCATACCAAAAATAATCGCCTCCGATGA
CCCACTGCAATCTCAAGCTAATAGGCTATGCCCACGAGTATCCAGATCCG
TATTCGTCTACTAGACACCCTCATCTGCCTTAGACCCTATTATTTATTAT
AACTTATTAAATCCCCATTGCCCTCATACGTATTTATATCGCCTTTGCAT
CCTATTTATATACATACGCGTACCACCATACTCACTGAACACATTCACCG
CATCGCAGGCTCGATAACTTATGAAAACTATTACTTAAGTGTATTTTTTT
TATATATATTTACAATATTACAATGACTATTAATAAATTATACCGATAAA
AAAAAAAAAAAAAAA

LD38082.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-RA 1402 CG6023-RA 1..1398 1..1398 6990 100 Plus
CG6023-RB 1366 CG6023-RB 233..1366 265..1398 5670 100 Plus
CG6106.b 1824 CG6106.b 1..116 173..58 580 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18203269..18204083 1397..584 4025 99.9 Minus
chrX 22417052 chrX 18204163..18204484 584..263 1610 100 Minus
chrX 22417052 chrX 18210088..18210306 219..1 1095 100 Minus
chrX 22417052 chrX 18208542..18208588 264..218 235 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18314123..18314937 1398..584 4075 100 Minus
X 23542271 X 18315017..18315338 584..263 1610 100 Minus
X 23542271 X 18320947..18321165 219..1 1095 100 Minus
X 23542271 X 18319398..18319444 264..218 235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18322221..18323035 1398..584 4075 100 Minus
X 23527363 X 18323115..18323436 584..263 1610 100 Minus
X 23527363 X 18329045..18329263 219..1 1095 100 Minus
X 23527363 X 18327496..18327542 264..218 235 100 Minus
Blast to na_te.dros performed 2019-03-16 05:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 4873..4906 164..131 116 82.4 Minus

LD38082.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:34:04 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18203329..18204082 585..1338 100 <- Minus
chrX 18204163..18204482 265..584 100 <- Minus
chrX 18208542..18208586 220..264 100 <- Minus
chrX 18210088..18210306 1..219 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:24 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RB 233..999 265..1031 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:15 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RB 233..999 265..1031 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:11:22 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RB 233..999 265..1031 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:39 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RB 233..999 265..1031 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:07:17 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RC 152..918 265..1031 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:37 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 1..1397 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:14 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 1..1397 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:22 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 1..1397 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:39 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 1..1397 1..1397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:07:17 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
CG6023-RA 29..1425 1..1397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:04 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
X 18320947..18321165 1..219 100   Minus
X 18315017..18315336 265..584 100 <- Minus
X 18319398..18319442 220..264 100 <- Minus
X 18314124..18314936 585..1397 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:04 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
X 18320947..18321165 1..219 100   Minus
X 18315017..18315336 265..584 100 <- Minus
X 18319398..18319442 220..264 100 <- Minus
X 18314124..18314936 585..1397 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:34:04 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
X 18320947..18321165 1..219 100   Minus
X 18315017..18315336 265..584 100 <- Minus
X 18319398..18319442 220..264 100 <- Minus
X 18314124..18314936 585..1397 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:22 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18214980..18215198 1..219 100   Minus
arm_X 18208157..18208969 585..1397 100 <- Minus
arm_X 18209050..18209369 265..584 100 <- Minus
arm_X 18213431..18213475 220..264 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:07:05 Download gff for LD38082.complete
Subject Subject Range Query Range Percent Splice Strand
X 18329045..18329263 1..219 100   Minus
X 18323115..18323434 265..584 100 <- Minus
X 18327496..18327540 220..264 100 <- Minus
X 18322222..18323034 585..1397 100 <- Minus

LD38082.pep Sequence

Translation from 497 to 1030

> LD38082.pep
MTPNIEHLQVALEVAKNTREAVLCLTKEWLRNQNHTLPQDLHSYSLHSLA
LKHPLQSEVKEVKFQNQLGDFVYSGKVTTLQEEMPAIIESLLVLEHLYEI
IVFDHQSWNCYFNNFVHFFHHNMHEALKVAGLNDACNPRNAEYNADHIWP
MFGAAVETIKVLTIIEHKYEQLIKLYQ*

LD38082.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\t1-PA 350 GF22514-PA 177..344 4..169 240 38 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18130-PA 325 GG18130-PA 143..318 1..176 741 77.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-PA 177 CG6023-PA 1..177 1..177 946 100 Plus
CG6023-PC 305 CG6023-PC 129..305 1..177 946 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27043-PA 321 GL27043-PA 141..312 8..174 259 35.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19304-PA 316 GA19304-PA 137..307 8..174 267 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22823-PA 55 GM22823-PA 1..55 123..177 280 94.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15647-PA 94 GD15647-PA 1..94 84..177 401 93.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19867-PA 190 GK19867-PA 5..181 3..174 217 28.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15538-PA 312 GE15538-PA 136..309 1..174 678 79.3 Plus

LD38082.hyp Sequence

Translation from 497 to 1030

> LD38082.hyp
MTPNIEHLQVALEVAKNTREAVLCLTKEWLRNQNHTLPQDLHSYSLHSLA
LKHPLQSEVKEVKFQNQLGDFVYSGKVTTLQEEMPAIIESLLVLEHLYEI
IVFDHQSWNCYFNNFVHFFHHNMHEALKVAGLNDACNPRNAEYNADHIWP
MFGAAVETIKVLTIIEHKYEQLIKLYQ*

LD38082.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6023-PA 177 CG6023-PA 1..177 1..177 946 100 Plus
CG6023-PC 305 CG6023-PC 129..305 1..177 946 100 Plus