BDGP Sequence Production Resources |
Search the DGRC for LD38082
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 380 |
Well: | 82 |
Vector: | pOT2 |
Associated Gene/Transcript | CG6023-RA |
Protein status: | LD38082.pep: gold |
Preliminary Size: | 1529 |
Sequenced Size: | 1415 |
Gene | Date | Evidence |
---|---|---|
CG6023 | 2001-01-01 | Release 2 assignment |
CG6023 | 2001-09-19 | Blastp of sequenced clone |
CG6023 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6023 | 2008-04-29 | Release 5.5 accounting |
CG6023 | 2008-08-15 | Release 5.9 accounting |
CG6023 | 2008-12-18 | 5.12 accounting |
1415 bp (1415 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060417
> LD38082.complete CCGGTTCTGTTGCGTCCGTTTATTCTCTGTTTCTTTTTTTTTAAATTAAC CCCTTACCTGTGCGTTGCGTAGCTCAAAAGTGTATAGATATCCAAGGCAA GTTCGGGGATTTTTCGTGAATTTCTTGCGGCCCGTAATTAACGTGGGTTT ACCTGGCCGCCCGCGGCAAAAGCATTAATAGCGTGACGCCCGTCATCACA GCTGTCCGCCGTCAAAAAGTTAATCACCGCACTGAAATAAAACACGTCGC GTGACAAAACTGAGCTACCTCCAAGTGCTGGCTCCTGGGCATCCTGCTGC TACTCACAGTCGCCACTAGTTGGCCAACGGGGACAATTGCCGCACCGCGT CGCGCTCGAGGATTGAGCCTGATTCTGCCGCACCGCAATCACGCACGACT ACACCATCACCACCAGCACACCAGGTCAATAAGCACCAAGATCGTGCCCC TGTTAACCAATCAGACTGAAGGCAGGGAGCAGTGCACGGACCTTAAAATG ACTCCCAATATCGAACACCTGCAAGTGGCGCTCGAGGTGGCCAAGAATAC GCGGGAGGCGGTCCTCTGTCTGACCAAAGAATGGCTGAGGAATCAAAACC ACACCCTGCCCCAAGATCTTCACTCCTACTCTCTGCATTCCCTGGCATTG AAGCATCCGCTCCAGTCGGAGGTCAAGGAAGTTAAGTTCCAGAACCAGCT GGGTGACTTTGTGTACAGTGGCAAGGTGACAACGCTGCAGGAGGAGATGC CGGCCATTATCGAGTCCCTGCTGGTCCTGGAGCATCTATACGAGATCATT GTGTTCGATCACCAGTCCTGGAACTGCTACTTCAATAACTTCGTGCATTT CTTCCATCACAACATGCACGAGGCTCTCAAGGTCGCCGGTCTCAACGATG CCTGCAATCCGAGGAACGCCGAGTACAATGCCGATCACATATGGCCGATG TTTGGCGCCGCCGTGGAGACCATCAAGGTGCTGACCATCATCGAGCACAA GTACGAGCAGCTGATCAAGCTGTATCAGTAATCCGCTGGACAGAGTTGGA CGCTCCAGAGGAGCAGTAAAAGCCATACCAAAAATAATCGCCTCCGATGA CCCACTGCAATCTCAAGCTAATAGGCTATGCCCACGAGTATCCAGATCCG TATTCGTCTACTAGACACCCTCATCTGCCTTAGACCCTATTATTTATTAT AACTTATTAAATCCCCATTGCCCTCATACGTATTTATATCGCCTTTGCAT CCTATTTATATACATACGCGTACCACCATACTCACTGAACACATTCACCG CATCGCAGGCTCGATAACTTATGAAAACTATTACTTAAGTGTATTTTTTT TATATATATTTACAATATTACAATGACTATTAATAAATTATACCGATAAA AAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 18203269..18204083 | 1397..584 | 4025 | 99.9 | Minus |
chrX | 22417052 | chrX | 18204163..18204484 | 584..263 | 1610 | 100 | Minus |
chrX | 22417052 | chrX | 18210088..18210306 | 219..1 | 1095 | 100 | Minus |
chrX | 22417052 | chrX | 18208542..18208588 | 264..218 | 235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 18314123..18314937 | 1398..584 | 4075 | 100 | Minus |
X | 23542271 | X | 18315017..18315338 | 584..263 | 1610 | 100 | Minus |
X | 23542271 | X | 18320947..18321165 | 219..1 | 1095 | 100 | Minus |
X | 23542271 | X | 18319398..18319444 | 264..218 | 235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 18322221..18323035 | 1398..584 | 4075 | 100 | Minus |
X | 23527363 | X | 18323115..18323436 | 584..263 | 1610 | 100 | Minus |
X | 23527363 | X | 18329045..18329263 | 219..1 | 1095 | 100 | Minus |
X | 23527363 | X | 18327496..18327542 | 264..218 | 235 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 4873..4906 | 164..131 | 116 | 82.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18203329..18204082 | 585..1338 | 100 | <- | Minus |
chrX | 18204163..18204482 | 265..584 | 100 | <- | Minus |
chrX | 18208542..18208586 | 220..264 | 100 | <- | Minus |
chrX | 18210088..18210306 | 1..219 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RB | 233..999 | 265..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RB | 233..999 | 265..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RB | 233..999 | 265..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RB | 233..999 | 265..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RC | 152..918 | 265..1031 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RA | 1..1397 | 1..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RA | 1..1397 | 1..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RA | 1..1397 | 1..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RA | 1..1397 | 1..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6023-RA | 29..1425 | 1..1397 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18320947..18321165 | 1..219 | 100 | Minus | |
X | 18315017..18315336 | 265..584 | 100 | <- | Minus |
X | 18319398..18319442 | 220..264 | 100 | <- | Minus |
X | 18314124..18314936 | 585..1397 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18320947..18321165 | 1..219 | 100 | Minus | |
X | 18315017..18315336 | 265..584 | 100 | <- | Minus |
X | 18319398..18319442 | 220..264 | 100 | <- | Minus |
X | 18314124..18314936 | 585..1397 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18320947..18321165 | 1..219 | 100 | Minus | |
X | 18315017..18315336 | 265..584 | 100 | <- | Minus |
X | 18319398..18319442 | 220..264 | 100 | <- | Minus |
X | 18314124..18314936 | 585..1397 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18214980..18215198 | 1..219 | 100 | Minus | |
arm_X | 18208157..18208969 | 585..1397 | 100 | <- | Minus |
arm_X | 18209050..18209369 | 265..584 | 100 | <- | Minus |
arm_X | 18213431..18213475 | 220..264 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18329045..18329263 | 1..219 | 100 | Minus | |
X | 18323115..18323434 | 265..584 | 100 | <- | Minus |
X | 18327496..18327540 | 220..264 | 100 | <- | Minus |
X | 18322222..18323034 | 585..1397 | 100 | <- | Minus |
Translation from 497 to 1030
> LD38082.pep MTPNIEHLQVALEVAKNTREAVLCLTKEWLRNQNHTLPQDLHSYSLHSLA LKHPLQSEVKEVKFQNQLGDFVYSGKVTTLQEEMPAIIESLLVLEHLYEI IVFDHQSWNCYFNNFVHFFHHNMHEALKVAGLNDACNPRNAEYNADHIWP MFGAAVETIKVLTIIEHKYEQLIKLYQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\t1-PA | 350 | GF22514-PA | 177..344 | 4..169 | 240 | 38 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18130-PA | 325 | GG18130-PA | 143..318 | 1..176 | 741 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6023-PA | 177 | CG6023-PA | 1..177 | 1..177 | 946 | 100 | Plus |
CG6023-PC | 305 | CG6023-PC | 129..305 | 1..177 | 946 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27043-PA | 321 | GL27043-PA | 141..312 | 8..174 | 259 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19304-PA | 316 | GA19304-PA | 137..307 | 8..174 | 267 | 35.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22823-PA | 55 | GM22823-PA | 1..55 | 123..177 | 280 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15647-PA | 94 | GD15647-PA | 1..94 | 84..177 | 401 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19867-PA | 190 | GK19867-PA | 5..181 | 3..174 | 217 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15538-PA | 312 | GE15538-PA | 136..309 | 1..174 | 678 | 79.3 | Plus |
Translation from 497 to 1030
> LD38082.hyp MTPNIEHLQVALEVAKNTREAVLCLTKEWLRNQNHTLPQDLHSYSLHSLA LKHPLQSEVKEVKFQNQLGDFVYSGKVTTLQEEMPAIIESLLVLEHLYEI IVFDHQSWNCYFNNFVHFFHHNMHEALKVAGLNDACNPRNAEYNADHIWP MFGAAVETIKVLTIIEHKYEQLIKLYQ*