BDGP Sequence Production Resources |
Search the DGRC for LD38104
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 381 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | Rrp47-RA |
Protein status: | LD38104.pep: gold |
Preliminary Size: | 1000 |
Sequenced Size: | 811 |
Gene | Date | Evidence |
---|---|---|
CG8928-RA | 2009-01-21 | est gleaning |
CG8928 | 2009-06-08 | Manual selection by Joe Carlson |
811 bp assembled on 2009-07-30
GenBank Submission: BT089004.1
> LD38104.complete CCAGATATAAACATTCGCACGCGATTTTAATTCCATTTAAAGAACATGGC TCAAGAAAATCAAGCTGTCGACAATGGACTGCCCTGCAACGCTTACCTGG ACACAAGCCTGCGAGAGGACGAAAACATGCAACACATCCTGAAAACCTTT TACAGCAGCATCGAACTCCTGGAAGCCGACACGGAGAAGGCACTGGCGCT ACAGGCAGAACGCACATTGAACACAAATGAACAAATAAAATTGGATAGCT ACCTTGTGTACTTGAACAGCACACTGTTTTTCATATACCTGAAACTGCAG GGTGAAGATGCCTCAAATCATGCTGTGATGCACGATTTGCGTCGTACAAG GGACCTACTTGCCCGCGATAAGAAAATAAACGATGCTCTAGCGGCGCCAA GACTGGATATGCCCGCTGCCAAGCGATTTATCGCAGCTGGAACCCACACA CGATTTGTGGACATGAACGGAGTTATGGTCTCCGAAAAACAATATAATAA AAGCAAGCAAGAAACTCCCAAATAATTAAAATCACAAAGTGTTGATTCTA TAGTATAGCAGCCTAAAAGGATCATTTGCCTTTGTTTCGTCGTTACGCTA GACAATGACAGTTGTATTAAAAAATGTATAGAAAACACGATATTTTCTTA CTGAACCATCCAAAACACAAGCGTCACAAGCAATCGACTCATCAAAGAAG TCAAGTTAGTACACCTTAATGAAACTGGGTTTACAAACTGAAACTGTTTG TTTTTTAAATGAATATCAACAACGTTCTGTATATGAATAAACTAATCTAG GTAAAAATGAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 15834873..15835190 | 1..318 | 100 | -> | Plus |
chrX | 15835259..15835751 | 319..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8928-RA | 1..480 | 46..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8928-RA | 1..480 | 46..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp47-RA | 1..480 | 46..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp47-RA | 1..480 | 46..525 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8928-RA | 1..809 | 1..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8928-RA | 1..809 | 1..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp47-RA | 34..842 | 1..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rrp47-RA | 34..842 | 1..809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15945011..15945328 | 1..318 | 100 | -> | Plus |
X | 15945397..15945889 | 319..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15945011..15945328 | 1..318 | 100 | -> | Plus |
X | 15945397..15945889 | 319..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15945011..15945328 | 1..318 | 100 | -> | Plus |
X | 15945397..15945889 | 319..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 15839044..15839361 | 1..318 | 100 | -> | Plus |
arm_X | 15839430..15839922 | 319..811 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 15953109..15953426 | 1..318 | 100 | -> | Plus |
X | 15953495..15953987 | 319..811 | 100 | Plus |
Translation from 45 to 524
> LD38104.hyp MAQENQAVDNGLPCNAYLDTSLREDENMQHILKTFYSSIELLEADTEKAL ALQAERTLNTNEQIKLDSYLVYLNSTLFFIYLKLQGEDASNHAVMHDLRR TRDLLARDKKINDALAAPRLDMPAAKRFIAAGTHTRFVDMNGVMVSEKQY NKSKQETPK*
Translation from 45 to 524
> LD38104.pep MAQENQAVDNGLPCNAYLDTSLREDENMQHILKTFYSSIELLEADTEKAL ALQAERTLNTNEQIKLDSYLVYLNSTLFFIYLKLQGEDASNHAVMHDLRR TRDLLARDKKINDALAAPRLDMPAAKRFIAAGTHTRFVDMNGVMVSEKQY NKSKQETPK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19713-PA | 154 | GF19713-PA | 6..131 | 17..142 | 402 | 59.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17933-PA | 159 | GG17933-PA | 1..159 | 1..159 | 685 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12544-PA | 151 | GH12544-PA | 16..146 | 25..156 | 362 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rrp47-PB | 159 | CG8928-PB | 1..159 | 1..159 | 806 | 100 | Plus |
Rrp47-PA | 159 | CG8928-PA | 1..159 | 1..159 | 806 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14174-PA | 103 | GI14174-PA | 22..103 | 25..105 | 138 | 42.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25611-PA | 164 | GA25611-PA | 17..153 | 17..153 | 401 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22601-PA | 159 | GM22601-PA | 1..159 | 1..159 | 753 | 88.7 | Plus |
Dsec\GM22554-PA | 158 | GM22554-PA | 1..158 | 1..159 | 725 | 86.8 | Plus |
Dsec\GM26682-PA | 134 | GM26682-PA | 1..134 | 25..159 | 608 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17253-PA | 159 | GD17253-PA | 1..159 | 1..159 | 755 | 88.7 | Plus |
Dsim\GD17220-PA | 169 | GD17220-PA | 1..158 | 1..158 | 741 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18423-PA | 90 | GJ18423-PA | 17..88 | 14..90 | 165 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15287-PA | 161 | GK15287-PA | 16..155 | 18..157 | 430 | 54.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17240-PA | 160 | GE17240-PA | 1..159 | 1..159 | 705 | 84.3 | Plus |