Clone LD38109 Report

Search the DGRC for LD38109

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:381
Well:9
Vector:pOT2
Associated Gene/TranscriptCG8147-RA
Protein status:LD38109.pep: gold
Preliminary Size:2002
Sequenced Size:1866

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8147 2001-01-01 Release 2 assignment
CG8147 2001-09-19 Blastp of sequenced clone
CG8147 2003-01-01 Sim4 clustering to Release 3
CG8147 2008-04-29 Release 5.5 accounting
CG8147 2008-08-15 Release 5.9 accounting
CG8147 2008-12-18 5.12 accounting

Clone Sequence Records

LD38109.complete Sequence

1866 bp (1866 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058670

> LD38109.complete
AAACGTGCTGGGCAGCGTACAGCCAGCTCGTAAACTGAGAAACTCTAAAA
CTCAGAAGAAAGTATAGAAAAATGAGGCTGCAGCTCTTCTTTTTTCTCGG
CCTGAGTGTTCTAGTCAGTGGAGGAGAATCCTCACACGATGCCGAGAGGC
GAATGCATCCGGTGTTCTCGCTTATGGGAACCGGATCGAATCCAATCGGA
GGAGGTCGATACAAGCGAGCCATGCCCCAGATCGTTTTTGATGCCGTAAG
ATCAGAGGAGCGGTACGCCGAGTACTGGCAGGGTTTGGCGGCCCAAACAC
TGGATCAGCAGCTGGAGAGTAAGCTGCGATTGAACACCCAGCTGGCCAGG
AATGTGATGCTCTTCATTGGCGACGGCATGTCCATACCGACAATCACGGC
GGGTCGCGTTTACTTGGGCGGCGAGGAGAAGCAGTTCGCCTTCGAGCAAT
TCCCGTATGTGGGTCTCAGCAAGACCTACTGTGCCAATATGCAGGTGGCC
GACTCCGCCTGCACCGCCACCGCCTATTTGGGTGGTGTCAAGGCCAACTA
TGGCACGATCGGAGTAAGTGCAGCGGTGCAGTTCAAGGATTGCCAGGCGC
AGGCACAAGCCGCCCACCATGTCTCCTCCATTGCGGCCTGGGCGCAGAAG
CAGGGAATGGCCACCGGACTGGTTACCACAACCTCCGTAACACATGCCTC
ACCAGCTGGAGTGTACGCCCACCTGGCCAACCGGAACTGGGAGAACGACG
CCGAAGTGGTGGGAGACAATGGTGACCCCGATCTGTGTCCGGACGCAGCT
GCCCAGCTGATAAACAGTCCGGTGGGTCAGAAACTTAATGTGATAATGGG
CGGAGGTCGCGAGAATTTCCTGCCCAAAGGCGTGACTGATTCCAGTGGAG
CGCCTGGTCGCCGTTTGGATGGCCGCAATCTCATCGACGAGTGGAAGAAC
CAGCACACGAACAGTGCTCAATATGTGGAGAATCGCAGGGAGCTGCTCAA
CCTATCCAATCACACTTCACGAGTACTGGGCTTGTTTGCCCCCTACCACA
TGGCCTACCATCTGGATGCTAGTCCAGCAGAGCAACCAACGCTGGAGGAG
ATGGTCCAGTCGGCCATGGAAATCTTGGAGCGCCAGAGTGCCGGACGCGG
TTACTTCCTTTTCGTGGAGGGCGGTCGGATCGATCATGGTCACCACGACA
CCTTGGCTTTGAGGGCCATCGATGAAACGGCGGAGTTCGACAAAGCGGTG
CGATTTGCCAGGAGTCACACGAGTACGGACGACACTTTAATAGTGGTCAG
TTCGGATCACTCGCACACCATGTCGCTGGCGGGCTATTCCAGCAGAAAGA
ACGATATCTTCGGCATCAATGACGGACAGCTGGCGGCGGATGATCTTCCA
TATGCCACTCTGAGCTATGCCAATGGACCGGGCTATGATAGTAACTACCT
CAGGGAAGGCGGCGCTGTGCGGAGGAAAAATCTGAGAGCCATCAATATGA
AGAACAAGGACTTCATGTTCCCCAGCACAGTTCCCTTGGAATCGGAAACG
CACGGTGGCGATGATGTGGCCGTTTTTGCTAGTGGACCGTATGCCCAGCT
TTTCACCGGAGTTTTCGAGCAGCATTTCATACCTCACGCCCTTGGTTACG
CCTCTTGCCTCAGTGATCGTAACATGTGCGTGGATGGGGGCGTGGCACGG
AGACCACGCTGAAACTTGGCGGGGATCAAAGGTTAAGTGAAGCACAATGA
GTCTAAGCGACAAACGTATTATTCTCGTTTAAGAGAGAAGCCACTAGAAG
ATAAGCAATCGTTTAAGGGGGATACTAAAATAAATAATTGAAATCTAAAA
AAAAAAAAAAAAAAAA

LD38109.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-RA 2060 CG8147-RA 143..1995 1..1853 9265 100 Plus
CG8147.a 2271 CG8147.a 354..2206 1..1853 9265 100 Plus
CG8147.c 2521 CG8147.c 354..2206 1..1853 9265 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5320850..5322571 125..1846 8490 99.5 Plus
chr3R 27901430 chr3R 5320665..5320790 1..126 630 100 Plus
chr2R 21145070 chr2R 5450012..5450101 470..559 225 83.3 Plus
chr2R 21145070 chr2R 18096743..18096849 578..472 220 80.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:32:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9495002..9496730 125..1853 8645 100 Plus
3R 32079331 3R 9494817..9494942 1..126 630 100 Plus
2R 25286936 2R 9562517..9562606 470..559 225 83.3 Plus
2R 25286936 2R 22210152..22210258 578..472 220 80.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9235833..9237561 125..1853 8645 100 Plus
3R 31820162 3R 9235648..9235773 1..126 630 100 Plus
2R 25260384 2R 9563738..9563805 492..559 220 88.2 Plus
2R 25260384 2R 22211351..22211457 578..472 220 80.3 Minus
3R 31820162 3R 20747142..20747232 759..669 155 78 Minus
3R 31820162 3R 20747366..20747406 535..495 145 90.2 Minus
Blast to na_te.dros performed on 2019-03-15 19:42:56 has no hits.

LD38109.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:43:53 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5320665..5320790 1..126 100 -> Plus
chr3R 5320852..5322571 127..1846 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:20:26 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 1..1641 72..1712 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:00:04 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 1..1641 72..1712 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:00:32 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 1..1641 72..1712 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:30:28 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 1..1641 72..1712 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:33 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 1..1641 72..1712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:47:23 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 1..1846 1..1846 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:00:04 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 1..1846 1..1846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:32 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 17..1862 1..1846 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:30:28 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RB 1..1846 1..1846 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:33 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
CG8147-RA 17..1862 1..1846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:53 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9494817..9494942 1..126 100 -> Plus
3R 9495004..9496723 127..1846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:53 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9494817..9494942 1..126 100 -> Plus
3R 9495004..9496723 127..1846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:43:53 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9494817..9494942 1..126 100 -> Plus
3R 9495004..9496723 127..1846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:32 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5320539..5320664 1..126 100 -> Plus
arm_3R 5320726..5322445 127..1846 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:06:54 Download gff for LD38109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9235835..9237554 127..1846 100   Plus
3R 9235648..9235773 1..126 100 -> Plus

LD38109.hyp Sequence

Translation from 71 to 1711

> LD38109.hyp
MRLQLFFFLGLSVLVSGGESSHDAERRMHPVFSLMGTGSNPIGGGRYKRA
MPQIVFDAVRSEERYAEYWQGLAAQTLDQQLESKLRLNTQLARNVMLFIG
DGMSIPTITAGRVYLGGEEKQFAFEQFPYVGLSKTYCANMQVADSACTAT
AYLGGVKANYGTIGVSAAVQFKDCQAQAQAAHHVSSIAAWAQKQGMATGL
VTTTSVTHASPAGVYAHLANRNWENDAEVVGDNGDPDLCPDAAAQLINSP
VGQKLNVIMGGGRENFLPKGVTDSSGAPGRRLDGRNLIDEWKNQHTNSAQ
YVENRRELLNLSNHTSRVLGLFAPYHMAYHLDASPAEQPTLEEMVQSAME
ILERQSAGRGYFLFVEGGRIDHGHHDTLALRAIDETAEFDKAVRFARSHT
STDDTLIVVSSDHSHTMSLAGYSSRKNDIFGINDGQLAADDLPYATLSYA
NGPGYDSNYLREGGAVRRKNLRAINMKNKDFMFPSTVPLESETHGGDDVA
VFASGPYAQLFTGVFEQHFIPHALGYASCLSDRNMCVDGGVARRPR*

LD38109.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8147-PA 546 CG8147-PA 1..546 1..546 2852 100 Plus
CG5656-PA 523 CG5656-PA 35..506 61..530 1206 51.2 Plus
CG5656-PB 530 CG5656-PB 35..513 61..530 1189 50.4 Plus
CG1809-PA 515 CG1809-PA 1..509 1..528 1187 49.4 Plus
CG5150-PB 517 CG5150-PB 46..511 61..532 1118 50 Plus

LD38109.pep Sequence

Translation from 71 to 1711

> LD38109.pep
MRLQLFFFLGLSVLVSGGESSHDAERRMHPVFSLMGTGSNPIGGGRYKRA
MPQIVFDAVRSEERYAEYWQGLAAQTLDQQLESKLRLNTQLARNVMLFIG
DGMSIPTITAGRVYLGGEEKQFAFEQFPYVGLSKTYCANMQVADSACTAT
AYLGGVKANYGTIGVSAAVQFKDCQAQAQAAHHVSSIAAWAQKQGMATGL
VTTTSVTHASPAGVYAHLANRNWENDAEVVGDNGDPDLCPDAAAQLINSP
VGQKLNVIMGGGRENFLPKGVTDSSGAPGRRLDGRNLIDEWKNQHTNSAQ
YVENRRELLNLSNHTSRVLGLFAPYHMAYHLDASPAEQPTLEEMVQSAME
ILERQSAGRGYFLFVEGGRIDHGHHDTLALRAIDETAEFDKAVRFARSHT
STDDTLIVVSSDHSHTMSLAGYSSRKNDIFGINDGQLAADDLPYATLSYA
NGPGYDSNYLREGGAVRRKNLRAINMKNKDFMFPSTVPLESETHGGDDVA
VFASGPYAQLFTGVFEQHFIPHALGYASCLSDRNMCVDGGVARRPR*

LD38109.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17216-PA 543 GF17216-PA 4..543 2..546 2593 86.6 Plus
Dana\GF23560-PA 523 GF23560-PA 35..506 61..530 1245 51.8 Plus
Dana\GF12475-PA 516 GF12475-PA 43..510 62..528 1169 51.2 Plus
Dana\GF10455-PA 525 GF10455-PA 15..515 31..530 1133 46.5 Plus
Dana\GF23984-PA 517 GF23984-PA 2..511 1..532 1126 45.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16809-PA 546 GG16809-PA 1..546 1..546 2839 95.2 Plus
Dere\GG13235-PA 529 GG13235-PA 36..506 62..530 1244 51.9 Plus
Dere\GG24085-PA 515 GG24085-PA 1..511 1..530 1223 48.9 Plus
Dere\GG15276-PA 517 GG15276-PA 2..511 3..532 1139 45.6 Plus
Dere\GG14123-PA 524 GG14123-PA 7..513 5..530 1114 45.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18436-PA 542 GH18436-PA 1..542 1..546 2245 76.1 Plus
Dgri\GH15376-PA 523 GH15376-PA 32..503 60..530 1253 52.1 Plus
Dgri\GH15197-PA 525 GH15197-PA 21..525 11..538 1167 48.1 Plus
Dgri\GH19931-PA 524 GH19931-PA 46..516 62..530 1161 51.2 Plus
Dgri\GH16243-PA 525 GH16243-PA 49..514 61..530 1141 48.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
phu-PA 546 CG8147-PA 1..546 1..546 2852 100 Plus
Alp1-PA 523 CG5656-PA 35..506 61..530 1206 51.2 Plus
Alp1-PB 530 CG5656-PB 35..513 61..530 1189 50.4 Plus
Alp6-PA 515 CG1809-PA 1..509 1..528 1187 49.4 Plus
Alp9-PB 517 CG5150-PB 46..511 61..532 1118 50 Plus
Alp9-PA 517 CG5150-PA 46..511 61..532 1118 50 Plus
Alp10-PA 524 CG10592-PA 10..511 8..528 1095 45.4 Plus
Alp5-PA 522 CG10827-PA 51..521 56..536 1080 49 Plus
Alp8-PB 533 CG3264-PB 27..531 26..536 1045 43.1 Plus
Alp8-PA 533 CG3264-PA 27..531 26..536 1045 43.1 Plus
Alp2-PA 538 CG3290-PA 59..535 62..540 1031 45.3 Plus
Alp7-PA 543 CG3292-PA 64..534 62..532 986 43.2 Plus
Alp4-PA 596 CG1462-PA 43..540 56..530 867 39.3 Plus
Alp11-PA 483 CG8105-PA 34..468 61..532 841 40.3 Plus
Alp4-PB 502 CG1462-PB 1..446 103..530 797 40.3 Plus
Alp12-PE 596 CG16771-PE 127..575 86..527 789 40.5 Plus
Alp12-PD 596 CG16771-PD 127..575 86..527 789 40.5 Plus
Alp12-PC 596 CG16771-PC 127..575 86..527 789 40.5 Plus
Alp12-PB 596 CG16771-PB 127..575 86..527 789 40.5 Plus
Alp12-PA 596 CG16771-PA 127..575 86..527 789 40.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24012-PA 547 GI24012-PA 1..543 1..543 2215 75.7 Plus
Dmoj\GI12135-PA 526 GI12135-PA 33..526 23..538 1190 49.4 Plus
Dmoj\GI12980-PA 503 GI12980-PA 13..486 60..530 1185 50 Plus
Dmoj\GI19888-PA 524 GI19888-PA 30..516 44..530 1167 48.9 Plus
Dmoj\GI13179-PA 525 GI13179-PA 51..515 62..530 1130 48.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13610-PA 392 GL13610-PA 2..392 1..394 1735 81.9 Plus
Dper\GL17170-PA 520 GL17170-PA 6..512 5..530 1162 47.6 Plus
Dper\GL12007-PA 538 GL12007-PA 41..527 46..530 1111 48 Plus
Dper\GL23248-PA 525 GL23248-PA 49..523 52..536 1074 46.5 Plus
Dper\GL16938-PA 533 GL16938-PA 57..524 62..532 1045 45 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20850-PA 543 GA20850-PA 1..543 1..546 2512 84.3 Plus
Dpse\GA24639-PA 521 GA24639-PA 23..504 52..530 1207 50.5 Plus
Dpse\GA18693-PA 522 GA18693-PA 1..512 1..532 1174 47 Plus
Dpse\GA14786-PA 520 GA14786-PA 6..512 5..530 1165 47.8 Plus
Dpse\GA10422-PA 537 GA10422-PA 41..527 46..530 1110 48 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23808-PA 546 GM23808-PA 1..546 1..546 2909 98.7 Plus
Dsec\GM22140-PA 523 GM22140-PA 35..506 61..530 1236 51.4 Plus
Dsec\GM21133-PA 515 GM21133-PA 1..509 1..528 1227 49.3 Plus
Dsec\GM14710-PA 517 GM14710-PA 2..511 1..532 1149 46.5 Plus
Dsec\GM13909-PA 524 GM13909-PA 7..513 5..530 1112 44.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18617-PA 546 GD18617-PA 1..546 1..546 2923 99.3 Plus
Dsim\GD13186-PA 524 GD13186-PA 7..513 5..530 1112 44.9 Plus
Dsim\GD13892-PA 511 GD13892-PA 2..505 3..532 1102 45.2 Plus
Dsim\GD25137-PA 533 GD25137-PA 27..531 26..536 1036 43.2 Plus
Dsim\GD20021-PA 521 GD20021-PA 17..520 29..536 1033 46.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23643-PA 545 GJ23643-PA 1..544 1..545 2240 75.1 Plus
Dvir\GJ13123-PA 521 GJ13123-PA 40..504 67..530 1215 51.8 Plus
Dvir\GJ13410-PA 526 GJ13410-PA 56..526 63..538 1188 51.8 Plus
Dvir\GJ15058-PA 524 GJ15058-PA 35..516 49..530 1149 48.8 Plus
Dvir\GJ10462-PA 520 GJ10462-PA 50..517 59..536 1132 49.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10963-PA 547 GK10963-PA 26..547 21..546 2356 81.3 Plus
Dwil\GK16996-PA 534 GK16996-PA 49..517 64..530 1228 52.1 Plus
Dwil\GK17300-PA 524 GK17300-PA 31..524 23..538 1156 47.7 Plus
Dwil\GK16879-PA 530 GK16879-PA 46..518 58..528 1104 48.5 Plus
Dwil\GK21822-PA 520 GK21822-PA 20..512 42..530 1082 46.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25953-PA 548 GE25953-PA 1..548 1..546 2822 94.9 Plus
Dyak\GE22974-PA 523 GE22974-PA 35..506 61..530 1252 52.2 Plus
Dyak\GE22333-PA 523 GE22333-PA 35..506 61..530 1246 52 Plus
Dyak\GE19286-PA 515 GE19286-PA 5..511 5..530 1203 48.5 Plus
Dyak\GE21498-PA 517 GE21498-PA 2..511 3..532 1150 46 Plus